data_6VBB # _model_server_result.job_id bVrLStFd1YQ5YswkYB25fA _model_server_result.datetime_utc '2024-10-19 19:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6VBB # _exptl.entry_id 6VBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.28 _cell.angle_gamma 90 _cell.entry_id 6VBB _cell.length_a 136.311 _cell.length_b 102.525 _cell.length_c 68.035 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 110 A TRP 128 1_555 A N MSE 111 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 111 A MSE 129 1_555 A N ILE 112 A ILE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C VAL 186 A VAL 204 1_555 A N MSE 187 A MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 187 A MSE 205 1_555 A N LEU 188 A LEU 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C ALA 295 A ALA 313 1_555 A N MSE 296 A MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 296 A MSE 314 1_555 A N LYS 297 A LYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 A C VAL 304 A VAL 322 1_555 A N MSE 305 A MSE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 305 A MSE 323 1_555 A N GLY 306 A GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale9 A C GLN 328 A GLN 346 1_555 A N MSE 329 A MSE 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 329 A MSE 347 1_555 A N THR 330 A THR 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C ASN 340 A ASN 358 1_555 A N MSE 341 A MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 341 A MSE 359 1_555 A N ILE 342 A ILE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C GLU 358 A GLU 376 1_555 A N MSE 359 A MSE 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 A C MSE 359 A MSE 377 1_555 A N LYS 360 A LYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C TRP 110 B TRP 128 1_555 B N MSE 111 B MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale16 B C MSE 111 B MSE 129 1_555 B N ILE 112 B ILE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 B C VAL 186 B VAL 204 1_555 B N MSE 187 B MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale18 B C MSE 187 B MSE 205 1_555 B N LEU 188 B LEU 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale19 B C ALA 295 B ALA 313 1_555 B N MSE 296 B MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 296 B MSE 314 1_555 B N LYS 297 B LYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 B C VAL 304 B VAL 322 1_555 B N MSE 305 B MSE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale22 B C MSE 305 B MSE 323 1_555 B N GLY 306 B GLY 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 B C GLN 328 B GLN 346 1_555 B N MSE 329 B MSE 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C MSE 329 B MSE 347 1_555 B N THR 330 B THR 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale25 B C ASN 340 B ASN 358 1_555 B N MSE 341 B MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale26 B C MSE 341 B MSE 359 1_555 B N ILE 342 B ILE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale27 B C GLU 358 B GLU 376 1_555 B N MSE 359 B MSE 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale28 B C MSE 359 B MSE 377 1_555 B N LYS 360 B LYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O ASP 243 A ASP 261 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A OD1 ASP 243 A ASP 261 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A O LEU 246 A LEU 264 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 A O LEU 267 A LEU 285 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 E NA NA . A NA 403 1_555 K O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 B O ASP 243 B ASP 261 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 B OD1 ASP 243 B ASP 261 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 B O LEU 246 B LEU 264 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc9 B O LEU 267 B LEU 285 1_555 H NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VBB _atom_sites.fract_transf_matrix[1][1] 0.007336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003622 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TMO A 1 401 1 TMO TMO . D 3 PEG A 1 402 2 PEG PEG . E 4 NA A 1 403 4 NA NA . F 5 CL A 1 404 7 CL CL . G 3 PEG B 1 401 3 PEG PEG . H 4 NA B 1 402 5 NA NA . I 5 CL B 1 403 6 CL CL . J 5 CL B 1 404 8 CL CL . K 6 HOH A 1 501 123 HOH HOH . K 6 HOH A 2 502 79 HOH HOH . K 6 HOH A 3 503 70 HOH HOH . K 6 HOH A 4 504 95 HOH HOH . K 6 HOH A 5 505 104 HOH HOH . K 6 HOH A 6 506 73 HOH HOH . K 6 HOH A 7 507 60 HOH HOH . K 6 HOH A 8 508 69 HOH HOH . K 6 HOH A 9 509 76 HOH HOH . K 6 HOH A 10 510 86 HOH HOH . K 6 HOH A 11 511 88 HOH HOH . K 6 HOH A 12 512 85 HOH HOH . K 6 HOH A 13 513 87 HOH HOH . K 6 HOH A 14 514 18 HOH HOH . K 6 HOH A 15 515 91 HOH HOH . K 6 HOH A 16 516 30 HOH HOH . K 6 HOH A 17 517 32 HOH HOH . K 6 HOH A 18 518 21 HOH HOH . K 6 HOH A 19 519 65 HOH HOH . K 6 HOH A 20 520 106 HOH HOH . K 6 HOH A 21 521 29 HOH HOH . K 6 HOH A 22 522 34 HOH HOH . K 6 HOH A 23 523 63 HOH HOH . K 6 HOH A 24 524 51 HOH HOH . K 6 HOH A 25 525 58 HOH HOH . K 6 HOH A 26 526 103 HOH HOH . K 6 HOH A 27 527 61 HOH HOH . K 6 HOH A 28 528 26 HOH HOH . K 6 HOH A 29 529 57 HOH HOH . K 6 HOH A 30 530 10 HOH HOH . K 6 HOH A 31 531 22 HOH HOH . K 6 HOH A 32 532 50 HOH HOH . K 6 HOH A 33 533 74 HOH HOH . K 6 HOH A 34 534 119 HOH HOH . K 6 HOH A 35 535 27 HOH HOH . K 6 HOH A 36 536 124 HOH HOH . K 6 HOH A 37 537 92 HOH HOH . K 6 HOH A 38 538 110 HOH HOH . K 6 HOH A 39 539 54 HOH HOH . K 6 HOH A 40 540 77 HOH HOH . K 6 HOH A 41 541 117 HOH HOH . K 6 HOH A 42 542 105 HOH HOH . K 6 HOH A 43 543 16 HOH HOH . K 6 HOH A 44 544 71 HOH HOH . K 6 HOH A 45 545 64 HOH HOH . K 6 HOH A 46 546 90 HOH HOH . K 6 HOH A 47 547 53 HOH HOH . K 6 HOH A 48 548 67 HOH HOH . K 6 HOH A 49 549 114 HOH HOH . K 6 HOH A 50 550 120 HOH HOH . K 6 HOH A 51 551 66 HOH HOH . K 6 HOH A 52 552 84 HOH HOH . K 6 HOH A 53 553 107 HOH HOH . K 6 HOH A 54 554 28 HOH HOH . K 6 HOH A 55 555 109 HOH HOH . K 6 HOH A 56 556 62 HOH HOH . K 6 HOH A 57 557 68 HOH HOH . K 6 HOH A 58 558 72 HOH HOH . K 6 HOH A 59 559 56 HOH HOH . K 6 HOH A 60 560 52 HOH HOH . K 6 HOH A 61 561 121 HOH HOH . K 6 HOH A 62 562 82 HOH HOH . K 6 HOH A 63 563 94 HOH HOH . K 6 HOH A 64 564 108 HOH HOH . K 6 HOH A 65 565 111 HOH HOH . K 6 HOH A 66 566 116 HOH HOH . K 6 HOH A 67 567 93 HOH HOH . K 6 HOH A 68 568 112 HOH HOH . K 6 HOH A 69 569 55 HOH HOH . K 6 HOH A 70 570 75 HOH HOH . K 6 HOH A 71 571 118 HOH HOH . K 6 HOH A 72 572 83 HOH HOH . K 6 HOH A 73 573 78 HOH HOH . K 6 HOH A 74 574 125 HOH HOH . K 6 HOH A 75 575 59 HOH HOH . K 6 HOH A 76 576 115 HOH HOH . L 6 HOH B 1 501 80 HOH HOH . L 6 HOH B 2 502 102 HOH HOH . L 6 HOH B 3 503 14 HOH HOH . L 6 HOH B 4 504 38 HOH HOH . L 6 HOH B 5 505 13 HOH HOH . L 6 HOH B 6 506 96 HOH HOH . L 6 HOH B 7 507 98 HOH HOH . L 6 HOH B 8 508 36 HOH HOH . L 6 HOH B 9 509 126 HOH HOH . L 6 HOH B 10 510 12 HOH HOH . L 6 HOH B 11 511 19 HOH HOH . L 6 HOH B 12 512 15 HOH HOH . L 6 HOH B 13 513 25 HOH HOH . L 6 HOH B 14 514 113 HOH HOH . L 6 HOH B 15 515 49 HOH HOH . L 6 HOH B 16 516 47 HOH HOH . L 6 HOH B 17 517 35 HOH HOH . L 6 HOH B 18 518 11 HOH HOH . L 6 HOH B 19 519 43 HOH HOH . L 6 HOH B 20 520 20 HOH HOH . L 6 HOH B 21 521 81 HOH HOH . L 6 HOH B 22 522 122 HOH HOH . L 6 HOH B 23 523 100 HOH HOH . L 6 HOH B 24 524 42 HOH HOH . L 6 HOH B 25 525 101 HOH HOH . L 6 HOH B 26 526 41 HOH HOH . L 6 HOH B 27 527 89 HOH HOH . L 6 HOH B 28 528 37 HOH HOH . L 6 HOH B 29 529 33 HOH HOH . L 6 HOH B 30 530 9 HOH HOH . L 6 HOH B 31 531 39 HOH HOH . L 6 HOH B 32 532 99 HOH HOH . L 6 HOH B 33 533 23 HOH HOH . L 6 HOH B 34 534 44 HOH HOH . L 6 HOH B 35 535 97 HOH HOH . L 6 HOH B 36 536 17 HOH HOH . L 6 HOH B 37 537 46 HOH HOH . L 6 HOH B 38 538 45 HOH HOH . L 6 HOH B 39 539 31 HOH HOH . L 6 HOH B 40 540 40 HOH HOH . L 6 HOH B 41 541 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -21.491 _atom_site.Cartn_y -1.148 _atom_site.Cartn_z -6.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 90.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #