data_6VBF # _model_server_result.job_id D3izhc1ZZEScv6tO5W6Lsw _model_server_result.datetime_utc '2024-10-19 15:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6VBF # _exptl.entry_id 6VBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VBF _cell.length_a 51.819 _cell.length_b 51.819 _cell.length_c 194.504 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E,F,G,I 1 1 A,C,D,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_565 y,-x+y+1,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -25.9095 44.87657 32.417333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 16 A ASP 15 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A OD2 ASP 59 A ASP 58 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? covale ? covale1 A C VAL 60 A VAL 59 1_555 A N MSE 61 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 61 A MSE 60 1_555 A N LEU 62 A LEU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc3 A O MSE 61 A MSE 60 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A O LEU 62 A LEU 61 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 A O GLY 64 A GLY 63 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? covale ? covale3 A C LEU 83 A LEU 82 1_555 A N MSE 84 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 84 A MSE 83 1_555 A N LEU 85 A LEU 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C ASP 91 A ASP 90 1_555 A N MSE 92 A MSE 91 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale6 A C ASP 91 A ASP 90 1_555 A N MSE 92 A MSE 91 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 A C MSE 92 A MSE 91 1_555 A N ASP 93 A ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C GLU 99 A GLU 98 1_555 A N MSE 100 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C MSE 100 A MSE 99 1_555 A N GLY 101 A GLY 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc6 B OD1 ASP 16 B ASP 15 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc7 B OD2 ASP 16 B ASP 15 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc8 B OD2 ASP 59 B ASP 58 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? covale ? covale10 B C VAL 60 B VAL 59 1_555 B N MSE 61 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 B C MSE 61 B MSE 60 1_555 B N LEU 62 B LEU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc9 B O MSE 61 B MSE 60 1_555 F CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc10 B O LEU 62 B LEU 61 1_555 G CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 B O GLY 64 B GLY 63 1_555 G CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc12 B OD1 ASP 66 B ASP 65 1_555 G CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? covale ? covale12 B C LEU 83 B LEU 82 1_555 B N MSE 84 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 B C MSE 84 B MSE 83 1_555 B N LEU 85 B LEU 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale14 B C ASP 91 B ASP 90 1_555 B N MSE 92 B MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale15 B C MSE 92 B MSE 91 1_555 B N ASP 93 B ASP 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 B C GLU 99 B GLU 98 1_555 B N MSE 100 B MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale17 B C MSE 100 B MSE 99 1_555 B N GLY 101 B GLY 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc13 C CA CA . A CA 201 1_555 H O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc14 C CA CA . A CA 201 1_555 H O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 D CA CA . A CA 202 1_555 H O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc16 D CA CA . A CA 202 1_555 H O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc17 F CA CA . B CA 202 1_555 I O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 F CA CA . B CA 202 1_555 I O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc19 F CA CA . B CA 202 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc20 G CA CA . B CA 203 1_555 I O HOH . B HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc21 G CA CA . B CA 203 1_555 I O HOH . B HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc22 D CA CA . A CA 202 1_555 H O HOH . A HOH 308 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VBF _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0.011142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 2 CA CA . D 2 CA A 1 202 4 CA CA . E 3 CL B 1 201 1 CL CL . F 2 CA B 1 202 3 CA CA . G 2 CA B 1 203 5 CA CA . H 4 HOH A 1 301 130 HOH HOH . H 4 HOH A 2 302 113 HOH HOH . H 4 HOH A 3 303 46 HOH HOH . H 4 HOH A 4 304 41 HOH HOH . H 4 HOH A 5 305 117 HOH HOH . H 4 HOH A 6 306 115 HOH HOH . H 4 HOH A 7 307 124 HOH HOH . H 4 HOH A 8 308 109 HOH HOH . H 4 HOH A 9 309 122 HOH HOH . H 4 HOH A 10 310 106 HOH HOH . H 4 HOH A 11 311 78 HOH HOH . H 4 HOH A 12 312 108 HOH HOH . H 4 HOH A 13 313 18 HOH HOH . H 4 HOH A 14 314 114 HOH HOH . H 4 HOH A 15 315 120 HOH HOH . H 4 HOH A 16 316 37 HOH HOH . H 4 HOH A 17 317 81 HOH HOH . H 4 HOH A 18 318 17 HOH HOH . H 4 HOH A 19 319 119 HOH HOH . H 4 HOH A 20 320 26 HOH HOH . H 4 HOH A 21 321 50 HOH HOH . H 4 HOH A 22 322 84 HOH HOH . H 4 HOH A 23 323 112 HOH HOH . H 4 HOH A 24 324 29 HOH HOH . H 4 HOH A 25 325 44 HOH HOH . H 4 HOH A 26 326 20 HOH HOH . H 4 HOH A 27 327 70 HOH HOH . H 4 HOH A 28 328 107 HOH HOH . H 4 HOH A 29 329 87 HOH HOH . H 4 HOH A 30 330 8 HOH HOH . H 4 HOH A 31 331 100 HOH HOH . H 4 HOH A 32 332 60 HOH HOH . H 4 HOH A 33 333 21 HOH HOH . H 4 HOH A 34 334 123 HOH HOH . H 4 HOH A 35 335 39 HOH HOH . H 4 HOH A 36 336 43 HOH HOH . H 4 HOH A 37 337 35 HOH HOH . H 4 HOH A 38 338 55 HOH HOH . H 4 HOH A 39 339 28 HOH HOH . H 4 HOH A 40 340 11 HOH HOH . H 4 HOH A 41 341 24 HOH HOH . H 4 HOH A 42 342 32 HOH HOH . H 4 HOH A 43 343 36 HOH HOH . H 4 HOH A 44 344 31 HOH HOH . H 4 HOH A 45 345 23 HOH HOH . H 4 HOH A 46 346 49 HOH HOH . H 4 HOH A 47 347 40 HOH HOH . H 4 HOH A 48 348 10 HOH HOH . H 4 HOH A 49 349 47 HOH HOH . H 4 HOH A 50 350 9 HOH HOH . H 4 HOH A 51 351 118 HOH HOH . H 4 HOH A 52 352 94 HOH HOH . H 4 HOH A 53 353 33 HOH HOH . H 4 HOH A 54 354 95 HOH HOH . H 4 HOH A 55 355 146 HOH HOH . H 4 HOH A 56 356 7 HOH HOH . H 4 HOH A 57 357 61 HOH HOH . H 4 HOH A 58 358 128 HOH HOH . H 4 HOH A 59 359 25 HOH HOH . H 4 HOH A 60 360 42 HOH HOH . H 4 HOH A 61 361 30 HOH HOH . H 4 HOH A 62 362 111 HOH HOH . H 4 HOH A 63 363 66 HOH HOH . H 4 HOH A 64 364 53 HOH HOH . H 4 HOH A 65 365 75 HOH HOH . H 4 HOH A 66 366 97 HOH HOH . H 4 HOH A 67 367 89 HOH HOH . H 4 HOH A 68 368 57 HOH HOH . H 4 HOH A 69 369 62 HOH HOH . H 4 HOH A 70 370 86 HOH HOH . H 4 HOH A 71 371 74 HOH HOH . H 4 HOH A 72 372 63 HOH HOH . H 4 HOH A 73 373 68 HOH HOH . H 4 HOH A 74 374 90 HOH HOH . H 4 HOH A 75 375 121 HOH HOH . H 4 HOH A 76 376 69 HOH HOH . H 4 HOH A 77 377 104 HOH HOH . H 4 HOH A 78 378 72 HOH HOH . I 4 HOH B 1 301 92 HOH HOH . I 4 HOH B 2 302 101 HOH HOH . I 4 HOH B 3 303 116 HOH HOH . I 4 HOH B 4 304 142 HOH HOH . I 4 HOH B 5 305 76 HOH HOH . I 4 HOH B 6 306 15 HOH HOH . I 4 HOH B 7 307 132 HOH HOH . I 4 HOH B 8 308 127 HOH HOH . I 4 HOH B 9 309 96 HOH HOH . I 4 HOH B 10 310 141 HOH HOH . I 4 HOH B 11 311 13 HOH HOH . I 4 HOH B 12 312 105 HOH HOH . I 4 HOH B 13 313 77 HOH HOH . I 4 HOH B 14 314 102 HOH HOH . I 4 HOH B 15 315 83 HOH HOH . I 4 HOH B 16 316 67 HOH HOH . I 4 HOH B 17 317 91 HOH HOH . I 4 HOH B 18 318 99 HOH HOH . I 4 HOH B 19 319 65 HOH HOH . I 4 HOH B 20 320 56 HOH HOH . I 4 HOH B 21 321 135 HOH HOH . I 4 HOH B 22 322 27 HOH HOH . I 4 HOH B 23 323 80 HOH HOH . I 4 HOH B 24 324 71 HOH HOH . I 4 HOH B 25 325 133 HOH HOH . I 4 HOH B 26 326 129 HOH HOH . I 4 HOH B 27 327 12 HOH HOH . I 4 HOH B 28 328 110 HOH HOH . I 4 HOH B 29 329 6 HOH HOH . I 4 HOH B 30 330 22 HOH HOH . I 4 HOH B 31 331 85 HOH HOH . I 4 HOH B 32 332 145 HOH HOH . I 4 HOH B 33 333 19 HOH HOH . I 4 HOH B 34 334 134 HOH HOH . I 4 HOH B 35 335 16 HOH HOH . I 4 HOH B 36 336 82 HOH HOH . I 4 HOH B 37 337 38 HOH HOH . I 4 HOH B 38 338 58 HOH HOH . I 4 HOH B 39 339 125 HOH HOH . I 4 HOH B 40 340 131 HOH HOH . I 4 HOH B 41 341 54 HOH HOH . I 4 HOH B 42 342 138 HOH HOH . I 4 HOH B 43 343 136 HOH HOH . I 4 HOH B 44 344 14 HOH HOH . I 4 HOH B 45 345 45 HOH HOH . I 4 HOH B 46 346 59 HOH HOH . I 4 HOH B 47 347 93 HOH HOH . I 4 HOH B 48 348 73 HOH HOH . I 4 HOH B 49 349 137 HOH HOH . I 4 HOH B 50 350 52 HOH HOH . I 4 HOH B 51 351 140 HOH HOH . I 4 HOH B 52 352 143 HOH HOH . I 4 HOH B 53 353 34 HOH HOH . I 4 HOH B 54 354 126 HOH HOH . I 4 HOH B 55 355 79 HOH HOH . I 4 HOH B 56 356 48 HOH HOH . I 4 HOH B 57 357 144 HOH HOH . I 4 HOH B 58 358 88 HOH HOH . I 4 HOH B 59 359 64 HOH HOH . I 4 HOH B 60 360 139 HOH HOH . I 4 HOH B 61 361 98 HOH HOH . I 4 HOH B 62 362 51 HOH HOH . I 4 HOH B 63 363 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.774 _atom_site.Cartn_y 69.348 _atom_site.Cartn_z 27.691 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 42.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #