data_6VBR # _model_server_result.job_id ZLAW2fwLYk9rOBN5mPFW3g _model_server_result.datetime_utc '2024-11-16 06:43:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6VBR # _exptl.entry_id 6VBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VBR _cell.length_a 90.79 _cell.length_b 90.79 _cell.length_c 134.118 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 90.79 90.79 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 90.79 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 90.79 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 90.79 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 90.79 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 90.79 90.79 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc7 B MN MN . A MN 201 1_555 E O01 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 B MN MN . A MN 201 1_555 E O02 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O02 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 C MN MN . A MN 202 1_555 E O03 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 6VBR _atom_sites.fract_transf_matrix[1][1] 0.011014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 200 MN MN . C 2 MN A 1 202 201 MN MN . D 3 QQ4 A 1 203 202 QQ4 PVP . E 4 QVV A 1 204 501 QVV 248 . F 5 SO4 A 1 205 2 SO4 SO4 . G 6 HOH A 1 301 17 HOH HOH . G 6 HOH A 2 302 6 HOH HOH . G 6 HOH A 3 303 2 HOH HOH . G 6 HOH A 4 304 34 HOH HOH . G 6 HOH A 5 305 5 HOH HOH . G 6 HOH A 6 306 4 HOH HOH . G 6 HOH A 7 307 22 HOH HOH . G 6 HOH A 8 308 24 HOH HOH . G 6 HOH A 9 309 13 HOH HOH . G 6 HOH A 10 310 31 HOH HOH . G 6 HOH A 11 311 21 HOH HOH . G 6 HOH A 12 312 16 HOH HOH . G 6 HOH A 13 313 35 HOH HOH . G 6 HOH A 14 314 3 HOH HOH . G 6 HOH A 15 315 33 HOH HOH . G 6 HOH A 16 316 30 HOH HOH . G 6 HOH A 17 317 10 HOH HOH . G 6 HOH A 18 318 21 HOH HOH . G 6 HOH A 19 319 29 HOH HOH . G 6 HOH A 20 320 22 HOH HOH . G 6 HOH A 21 321 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 QQ4 . . . D 3 47.125 30.711 9.363 1 106.35 ? C12 QQ4 203 A 1 HETATM 2 C C11 QQ4 . . . D 3 47.045 30.884 10.892 1 122.84 ? C11 QQ4 203 A 1 HETATM 3 C C01 QQ4 . . . D 3 45.965 29.99 11.51 1 109.37 ? C01 QQ4 203 A 1 HETATM 4 C C02 QQ4 . . . D 3 45.432 30.473 12.88 1 108.46 ? C02 QQ4 203 A 1 HETATM 5 C C03 QQ4 . . . D 3 44.55 31.747 13.015 1 107.69 ? C03 QQ4 203 A 1 HETATM 6 C C04 QQ4 . . . D 3 43.037 31.487 13.102 1 112.7 ? C04 QQ4 203 A 1 HETATM 7 C C05 QQ4 . . . D 3 42.364 32.743 13.668 1 124.2 ? C05 QQ4 203 A 1 HETATM 8 C C19 QQ4 . . . D 3 50.569 29.186 8.526 1 102.54 ? C19 QQ4 203 A 1 HETATM 9 C C20 QQ4 . . . D 3 49.588 28.194 7.944 1 108.82 ? C20 QQ4 203 A 1 HETATM 10 C C21 QQ4 . . . D 3 48.298 28.993 7.796 1 112.34 ? C21 QQ4 203 A 1 HETATM 11 C C22 QQ4 . . . D 3 46.157 27.452 11.019 1 90.68 ? C22 QQ4 203 A 1 HETATM 12 C C23 QQ4 . . . D 3 47.748 28.348 12.529 1 101.23 ? C23 QQ4 203 A 1 HETATM 13 C C24 QQ4 . . . D 3 48.043 26.85 12.389 1 83.8 ? C24 QQ4 203 A 1 HETATM 14 C C25 QQ4 . . . D 3 47.334 26.486 11.098 1 86.32 ? C25 QQ4 203 A 1 HETATM 15 C C26 QQ4 . . . D 3 44.14 32.928 10.718 1 130.63 ? C26 QQ4 203 A 1 HETATM 16 C C27 QQ4 . . . D 3 44.391 34.376 10.286 1 138.43 ? C27 QQ4 203 A 1 HETATM 17 C C28 QQ4 . . . D 3 45.674 34.772 11.014 1 140.08 ? C28 QQ4 203 A 1 HETATM 18 C C29 QQ4 . . . D 3 45.695 33.872 12.239 1 137.42 ? C29 QQ4 203 A 1 HETATM 19 C C30 QQ4 . . . D 3 39.965 32.168 12.827 1 117.79 ? C30 QQ4 203 A 1 HETATM 20 C C31 QQ4 . . . D 3 38.598 32.045 13.476 1 111.89 ? C31 QQ4 203 A 1 HETATM 21 C C32 QQ4 . . . D 3 38.742 32.699 14.829 1 116.49 ? C32 QQ4 203 A 1 HETATM 22 C C33 QQ4 . . . D 3 40.236 32.648 15.156 1 118.99 ? C33 QQ4 203 A 1 HETATM 23 C C42 QQ4 . . . D 3 49.696 30.134 9.334 1 111.18 ? C42 QQ4 203 A 1 HETATM 24 N N02 QQ4 . . . D 3 48.309 29.992 8.875 1 104.55 ? N02 QQ4 203 A 1 HETATM 25 N N03 QQ4 . . . D 3 46.588 28.678 11.682 1 85.5 ? N03 QQ4 203 A 1 HETATM 26 N N04 QQ4 . . . D 3 44.776 32.783 12.024 1 127.85 ? N04 QQ4 203 A 1 HETATM 27 N N05 QQ4 . . . D 3 40.939 32.531 13.865 1 126.25 ? N05 QQ4 203 A 1 HETATM 28 O O02 QQ4 . . . D 3 48.368 29.097 13.215 1 97 ? O02 QQ4 203 A 1 HETATM 29 O O03 QQ4 . . . D 3 46.351 34.022 13.217 1 132.77 ? O03 QQ4 203 A 1 HETATM 30 O O04 QQ4 . . . D 3 40.2 31.995 11.678 1 104.28 ? O04 QQ4 203 A 1 HETATM 31 O O05 QQ4 . . . D 3 50.083 30.855 10.195 1 108.06 ? O05 QQ4 203 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 809 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #