data_6VBZ # _model_server_result.job_id MMLVk8wGCeniXFIcpTVUNw _model_server_result.datetime_utc '2024-12-01 05:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 6VBZ # _exptl.entry_id 6VBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VBZ _cell.length_a 190.057 _cell.length_b 190.057 _cell.length_c 77.759 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 202 A ASP 371 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc2 A OD2 ASP 208 A ASP 377 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A OE2 GLU 257 A GLU 426 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A OE2 GLU 261 A GLU 430 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 D MN MN . A MN 502 1_555 I O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc6 E MN MN . A MN 503 1_555 I O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc7 E MN MN . A MN 503 1_555 I O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 E MN MN . A MN 503 1_555 I O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc9 E MN MN . A MN 503 6_555 B NE2 HIS 269 B HIS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc10 B NE2 HIS 142 B HIS 311 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc11 B OD2 ASP 202 B ASP 371 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 B OE2 GLU 236 B GLU 405 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc13 B OE2 GLU 240 B GLU 409 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc14 H MN MN . B MN 503 1_555 J O HOH . B HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc15 H MN MN . B MN 503 1_555 J O HOH . B HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc16 H MN MN . B MN 503 1_555 J O HOH . B HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VBZ _atom_sites.fract_transf_matrix[1][1] 0.005262 _atom_sites.fract_transf_matrix[1][2] 0.003038 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 501 1 MN MN . D 2 MN A 1 502 2 MN MN . E 2 MN A 1 503 4 MN MN . F 2 MN B 1 501 3 MN MN . G 2 MN B 1 502 6 MN MN . H 2 MN B 1 503 7 MN MN . I 3 HOH A 1 601 114 HOH HOH . I 3 HOH A 2 602 181 HOH HOH . I 3 HOH A 3 603 90 HOH HOH . I 3 HOH A 4 604 91 HOH HOH . I 3 HOH A 5 605 173 HOH HOH . I 3 HOH A 6 606 152 HOH HOH . I 3 HOH A 7 607 108 HOH HOH . I 3 HOH A 8 608 49 HOH HOH . I 3 HOH A 9 609 183 HOH HOH . I 3 HOH A 10 610 59 HOH HOH . I 3 HOH A 11 611 28 HOH HOH . I 3 HOH A 12 612 65 HOH HOH . I 3 HOH A 13 613 14 HOH HOH . I 3 HOH A 14 614 85 HOH HOH . I 3 HOH A 15 615 33 HOH HOH . I 3 HOH A 16 616 32 HOH HOH . I 3 HOH A 17 617 35 HOH HOH . I 3 HOH A 18 618 26 HOH HOH . I 3 HOH A 19 619 6 HOH HOH . I 3 HOH A 20 620 40 HOH HOH . I 3 HOH A 21 621 140 HOH HOH . I 3 HOH A 22 622 100 HOH HOH . I 3 HOH A 23 623 191 HOH HOH . I 3 HOH A 24 624 111 HOH HOH . I 3 HOH A 25 625 192 HOH HOH . I 3 HOH A 26 626 2 HOH HOH . I 3 HOH A 27 627 53 HOH HOH . I 3 HOH A 28 628 45 HOH HOH . I 3 HOH A 29 629 186 HOH HOH . I 3 HOH A 30 630 22 HOH HOH . I 3 HOH A 31 631 170 HOH HOH . I 3 HOH A 32 632 150 HOH HOH . I 3 HOH A 33 633 52 HOH HOH . I 3 HOH A 34 634 34 HOH HOH . I 3 HOH A 35 635 104 HOH HOH . I 3 HOH A 36 636 39 HOH HOH . I 3 HOH A 37 637 23 HOH HOH . I 3 HOH A 38 638 9 HOH HOH . I 3 HOH A 39 639 36 HOH HOH . I 3 HOH A 40 640 37 HOH HOH . I 3 HOH A 41 641 38 HOH HOH . I 3 HOH A 42 642 179 HOH HOH . I 3 HOH A 43 643 69 HOH HOH . I 3 HOH A 44 644 13 HOH HOH . I 3 HOH A 45 645 83 HOH HOH . I 3 HOH A 46 646 132 HOH HOH . I 3 HOH A 47 647 31 HOH HOH . I 3 HOH A 48 648 162 HOH HOH . I 3 HOH A 49 649 157 HOH HOH . I 3 HOH A 50 650 21 HOH HOH . I 3 HOH A 51 651 109 HOH HOH . I 3 HOH A 52 652 27 HOH HOH . I 3 HOH A 53 653 153 HOH HOH . I 3 HOH A 54 654 77 HOH HOH . I 3 HOH A 55 655 42 HOH HOH . I 3 HOH A 56 656 102 HOH HOH . I 3 HOH A 57 657 8 HOH HOH . I 3 HOH A 58 658 95 HOH HOH . I 3 HOH A 59 659 135 HOH HOH . I 3 HOH A 60 660 46 HOH HOH . I 3 HOH A 61 661 99 HOH HOH . I 3 HOH A 62 662 113 HOH HOH . I 3 HOH A 63 663 17 HOH HOH . I 3 HOH A 64 664 137 HOH HOH . I 3 HOH A 65 665 122 HOH HOH . I 3 HOH A 66 666 98 HOH HOH . I 3 HOH A 67 667 156 HOH HOH . I 3 HOH A 68 668 92 HOH HOH . I 3 HOH A 69 669 116 HOH HOH . I 3 HOH A 70 670 87 HOH HOH . I 3 HOH A 71 671 195 HOH HOH . I 3 HOH A 72 672 175 HOH HOH . I 3 HOH A 73 673 169 HOH HOH . I 3 HOH A 74 674 78 HOH HOH . I 3 HOH A 75 675 97 HOH HOH . I 3 HOH A 76 676 10 HOH HOH . I 3 HOH A 77 677 171 HOH HOH . I 3 HOH A 78 678 194 HOH HOH . I 3 HOH A 79 679 117 HOH HOH . I 3 HOH A 80 680 118 HOH HOH . I 3 HOH A 81 681 73 HOH HOH . I 3 HOH A 82 682 123 HOH HOH . I 3 HOH A 83 683 64 HOH HOH . I 3 HOH A 84 684 134 HOH HOH . I 3 HOH A 85 685 82 HOH HOH . I 3 HOH A 86 686 107 HOH HOH . I 3 HOH A 87 687 131 HOH HOH . I 3 HOH A 88 688 196 HOH HOH . I 3 HOH A 89 689 161 HOH HOH . I 3 HOH A 90 690 88 HOH HOH . I 3 HOH A 91 691 149 HOH HOH . I 3 HOH A 92 692 172 HOH HOH . I 3 HOH A 93 693 130 HOH HOH . I 3 HOH A 94 694 189 HOH HOH . I 3 HOH A 95 695 96 HOH HOH . I 3 HOH A 96 696 146 HOH HOH . I 3 HOH A 97 697 58 HOH HOH . I 3 HOH A 98 698 182 HOH HOH . J 3 HOH B 1 601 80 HOH HOH . J 3 HOH B 2 602 187 HOH HOH . J 3 HOH B 3 603 81 HOH HOH . J 3 HOH B 4 604 24 HOH HOH . J 3 HOH B 5 605 138 HOH HOH . J 3 HOH B 6 606 54 HOH HOH . J 3 HOH B 7 607 141 HOH HOH . J 3 HOH B 8 608 184 HOH HOH . J 3 HOH B 9 609 136 HOH HOH . J 3 HOH B 10 610 15 HOH HOH . J 3 HOH B 11 611 142 HOH HOH . J 3 HOH B 12 612 94 HOH HOH . J 3 HOH B 13 613 48 HOH HOH . J 3 HOH B 14 614 105 HOH HOH . J 3 HOH B 15 615 148 HOH HOH . J 3 HOH B 16 616 61 HOH HOH . J 3 HOH B 17 617 43 HOH HOH . J 3 HOH B 18 618 51 HOH HOH . J 3 HOH B 19 619 1 HOH HOH . J 3 HOH B 20 620 129 HOH HOH . J 3 HOH B 21 621 18 HOH HOH . J 3 HOH B 22 622 56 HOH HOH . J 3 HOH B 23 623 19 HOH HOH . J 3 HOH B 24 624 86 HOH HOH . J 3 HOH B 25 625 84 HOH HOH . J 3 HOH B 26 626 63 HOH HOH . J 3 HOH B 27 627 106 HOH HOH . J 3 HOH B 28 628 55 HOH HOH . J 3 HOH B 29 629 133 HOH HOH . J 3 HOH B 30 630 20 HOH HOH . J 3 HOH B 31 631 16 HOH HOH . J 3 HOH B 32 632 5 HOH HOH . J 3 HOH B 33 633 66 HOH HOH . J 3 HOH B 34 634 47 HOH HOH . J 3 HOH B 35 635 3 HOH HOH . J 3 HOH B 36 636 93 HOH HOH . J 3 HOH B 37 637 71 HOH HOH . J 3 HOH B 38 638 72 HOH HOH . J 3 HOH B 39 639 127 HOH HOH . J 3 HOH B 40 640 50 HOH HOH . J 3 HOH B 41 641 11 HOH HOH . J 3 HOH B 42 642 62 HOH HOH . J 3 HOH B 43 643 41 HOH HOH . J 3 HOH B 44 644 125 HOH HOH . J 3 HOH B 45 645 25 HOH HOH . J 3 HOH B 46 646 143 HOH HOH . J 3 HOH B 47 647 67 HOH HOH . J 3 HOH B 48 648 76 HOH HOH . J 3 HOH B 49 649 167 HOH HOH . J 3 HOH B 50 650 79 HOH HOH . J 3 HOH B 51 651 115 HOH HOH . J 3 HOH B 52 652 110 HOH HOH . J 3 HOH B 53 653 180 HOH HOH . J 3 HOH B 54 654 121 HOH HOH . J 3 HOH B 55 655 74 HOH HOH . J 3 HOH B 56 656 185 HOH HOH . J 3 HOH B 57 657 7 HOH HOH . J 3 HOH B 58 658 29 HOH HOH . J 3 HOH B 59 659 12 HOH HOH . J 3 HOH B 60 660 4 HOH HOH . J 3 HOH B 61 661 30 HOH HOH . J 3 HOH B 62 662 101 HOH HOH . J 3 HOH B 63 663 70 HOH HOH . J 3 HOH B 64 664 89 HOH HOH . J 3 HOH B 65 665 60 HOH HOH . J 3 HOH B 66 666 154 HOH HOH . J 3 HOH B 67 667 155 HOH HOH . J 3 HOH B 68 668 158 HOH HOH . J 3 HOH B 69 669 160 HOH HOH . J 3 HOH B 70 670 163 HOH HOH . J 3 HOH B 71 671 159 HOH HOH . J 3 HOH B 72 672 126 HOH HOH . J 3 HOH B 73 673 44 HOH HOH . J 3 HOH B 74 674 166 HOH HOH . J 3 HOH B 75 675 144 HOH HOH . J 3 HOH B 76 676 68 HOH HOH . J 3 HOH B 77 677 75 HOH HOH . J 3 HOH B 78 678 174 HOH HOH . J 3 HOH B 79 679 128 HOH HOH . J 3 HOH B 80 680 57 HOH HOH . J 3 HOH B 81 681 151 HOH HOH . J 3 HOH B 82 682 120 HOH HOH . J 3 HOH B 83 683 112 HOH HOH . J 3 HOH B 84 684 119 HOH HOH . J 3 HOH B 85 685 176 HOH HOH . J 3 HOH B 86 686 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -86.217 _atom_site.Cartn_y 10.848 _atom_site.Cartn_z 15.192 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 104.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #