data_6VC0
#
_model_server_result.job_id            dl9YLIqazzyWyqaarYmvjQ 
_model_server_result.datetime_utc      '2024-10-10 03:30:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vc0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6VC0 
#
_exptl.entry_id    6VC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.75 
_cell.angle_gamma         90 
_cell.entry_id            6VC0 
_cell.length_a            155.532 
_cell.length_b            124.775 
_cell.length_c            81.053 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F 1 1 
B,E,G 2 1 
C,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6VC0 
_atom_sites.fract_transf_matrix[1][1]    0.00643 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002695 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 501 502 GOL GOL . 
E 2 GOL B 1 501 502 GOL GOL . 
F 3 HOH A 1 601 12 HOH HOH . 
F 3 HOH A 2 602 52 HOH HOH . 
F 3 HOH A 3 603 68 HOH HOH . 
F 3 HOH A 4 604 22 HOH HOH . 
F 3 HOH A 5 605 23 HOH HOH . 
F 3 HOH A 6 606 6 HOH HOH . 
F 3 HOH A 7 607 13 HOH HOH . 
F 3 HOH A 8 608 27 HOH HOH . 
F 3 HOH A 9 609 83 HOH HOH . 
F 3 HOH A 10 610 59 HOH HOH . 
F 3 HOH A 11 611 17 HOH HOH . 
F 3 HOH A 12 612 69 HOH HOH . 
F 3 HOH A 13 613 40 HOH HOH . 
F 3 HOH A 14 614 66 HOH HOH . 
F 3 HOH A 15 615 36 HOH HOH . 
F 3 HOH A 16 616 58 HOH HOH . 
F 3 HOH A 17 617 46 HOH HOH . 
F 3 HOH A 18 618 77 HOH HOH . 
F 3 HOH A 19 619 32 HOH HOH . 
F 3 HOH A 20 620 82 HOH HOH . 
F 3 HOH A 21 621 29 HOH HOH . 
G 3 HOH B 1 601 39 HOH HOH . 
G 3 HOH B 2 602 71 HOH HOH . 
G 3 HOH B 3 603 55 HOH HOH . 
G 3 HOH B 4 604 8 HOH HOH . 
G 3 HOH B 5 605 73 HOH HOH . 
G 3 HOH B 6 606 62 HOH HOH . 
G 3 HOH B 7 607 16 HOH HOH . 
G 3 HOH B 8 608 60 HOH HOH . 
G 3 HOH B 9 609 14 HOH HOH . 
G 3 HOH B 10 610 35 HOH HOH . 
G 3 HOH B 11 611 11 HOH HOH . 
G 3 HOH B 12 612 10 HOH HOH . 
G 3 HOH B 13 613 34 HOH HOH . 
G 3 HOH B 14 614 84 HOH HOH . 
G 3 HOH B 15 615 49 HOH HOH . 
G 3 HOH B 16 616 15 HOH HOH . 
G 3 HOH B 17 617 81 HOH HOH . 
H 3 HOH C 1 501 9 HOH HOH . 
H 3 HOH C 2 502 5 HOH HOH . 
H 3 HOH C 3 503 31 HOH HOH . 
H 3 HOH C 4 504 33 HOH HOH . 
H 3 HOH C 5 505 43 HOH HOH . 
H 3 HOH C 6 506 45 HOH HOH . 
H 3 HOH C 7 507 56 HOH HOH . 
H 3 HOH C 8 508 21 HOH HOH . 
H 3 HOH C 9 509 57 HOH HOH . 
H 3 HOH C 10 510 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -42.433 -51.234 23.9 1 77.35 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . D 2 -42.098 -51.637 22.575 1 52.29 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . D 2 -43.902 -50.891 24.023 1 71.9 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . D 2 -44.704 -52.022 23.683 1 82.63 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . D 2 -44.313 -49.69 23.198 1 64.69 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . D 2 -43.6 -48.519 23.586 1 57.01 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#