data_6VC1 # _model_server_result.job_id BjRjxubqw4hcuv00wvFmKQ _model_server_result.datetime_utc '2024-12-23 02:51:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6VC1 # _exptl.entry_id 6VC1 _exptl.method 'POWDER DIFFRACTION' # _entity.details ? _entity.formula_weight 88.019 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXALATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VC1 _cell.length_a 18.529 _cell.length_b 30.288 _cell.length_c 39.731 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,F 2 1 C,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 7 A CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 B SG CYS 2 B CYS 2 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 C SG CYS 2 C CYS 2 1_555 C SG CYS 7 C CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C DPN 1 A DPN 1 1_555 A N CYS 2 A CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C PHE 3 A PHE 3 1_555 A N DTR 4 A DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C DTR 4 A DTR 4 1_555 A N LYS 5 A LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C DPN 1 B DPN 1 1_555 B N CYS 2 B CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 B C PHE 3 B PHE 3 1_555 B N DTR 4 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B C DTR 4 B DTR 4 1_555 B N LYS 5 B LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 C C DPN 1 C DPN 1 1_555 C N CYS 2 C CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 C C PHE 3 C PHE 3 1_555 C N DTR 4 C DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 C C DTR 4 C DTR 4 1_555 C N LYS 5 C LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C2 O4 -2' _chem_comp.formula_weight 88.019 _chem_comp.id OXL _chem_comp.mon_nstd_flag . _chem_comp.name 'OXALATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OXL sing 91 n n C1 O1 OXL doub 92 n n C1 O3 OXL sing 93 n n C2 O2 OXL doub 94 n n C2 O4 OXL sing 95 n n # _atom_sites.entry_id 6VC1 _atom_sites.fract_transf_matrix[1][1] 0.05397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 OXL A 1 101 51 OXL OXL . E 3 HOH A 1 201 47 HOH HOH . E 3 HOH A 2 202 19 HOH HOH . E 3 HOH A 3 203 46 HOH HOH . E 3 HOH A 4 204 8 HOH HOH . E 3 HOH A 5 205 10 HOH HOH . E 3 HOH A 6 206 48 HOH HOH . E 3 HOH A 7 207 33 HOH HOH . E 3 HOH A 8 208 38 HOH HOH . E 3 HOH A 9 209 24 HOH HOH . E 3 HOH A 10 210 27 HOH HOH . F 3 HOH B 1 101 4 HOH HOH . F 3 HOH B 2 102 42 HOH HOH . F 3 HOH B 3 103 29 HOH HOH . F 3 HOH B 4 104 18 HOH HOH . F 3 HOH B 5 105 49 HOH HOH . G 3 HOH C 1 101 1 HOH HOH . G 3 HOH C 2 102 39 HOH HOH . G 3 HOH C 3 103 14 HOH HOH . G 3 HOH C 4 104 37 HOH HOH . G 3 HOH C 5 105 12 HOH HOH . G 3 HOH C 6 106 16 HOH HOH . G 3 HOH C 7 107 45 HOH HOH . G 3 HOH C 8 108 43 HOH HOH . G 3 HOH C 9 109 40 HOH HOH . G 3 HOH C 10 110 2 HOH HOH . G 3 HOH C 11 111 36 HOH HOH . G 3 HOH C 12 112 44 HOH HOH . G 3 HOH C 13 113 41 HOH HOH . G 3 HOH C 14 114 22 HOH HOH . G 3 HOH C 15 115 35 HOH HOH . G 3 HOH C 16 116 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OXL . . . D 2 -3.086 14.806 14.08 1 47.37 ? C1 OXL 101 A 1 HETATM 2 C C2 OXL . . . D 2 -2.237 15.246 15.184 1 47.37 ? C2 OXL 101 A 1 HETATM 3 O O1 OXL . . . D 2 -2.761 13.783 13.434 1 47.37 ? O1 OXL 101 A 1 HETATM 4 O O2 OXL . . . D 2 -1.21 14.583 15.457 1 47.37 ? O2 OXL 101 A 1 HETATM 5 O O3 OXL . . . D 2 -4.117 15.463 13.811 1 47.37 ? O3 OXL 101 A 1 HETATM 6 O O4 OXL . . . D 2 -2.558 16.272 15.826 1 47.37 ? O4 OXL 101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #