data_6VC8 # _model_server_result.job_id 5vbxtvxiY8voOS7DASJ8Qw _model_server_result.datetime_utc '2025-06-27 08:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 6VC8 # _exptl.entry_id 6VC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.92 _cell.angle_gamma 90 _cell.entry_id 6VC8 _cell.length_a 69.21 _cell.length_b 82.33 _cell.length_c 88.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc3 D O1G GNP . A GNP 1001 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 D O2B GNP . A GNP 1001 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 E MG MG . A MG 1002 1_555 J O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc6 E MG MG . A MG 1002 1_555 J O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 B OG1 THR 36 B THR 35 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc9 F O1G GNP . B GNP 1001 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc10 F O2B GNP . B GNP 1001 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc11 G MG MG . B MG 1002 1_555 K O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 G MG MG . B MG 1002 1_555 K O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc13 C OG SER 18 C SER 17 1_555 I MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc14 H O1G GNP . C GNP 1001 1_555 I MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc15 H O2B GNP . C GNP 1001 1_555 I MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc16 I MG MG . C MG 1002 1_555 L O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc17 I MG MG . C MG 1002 1_555 L O HOH . C HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc18 I MG MG . C MG 1002 1_555 L O HOH . C HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VC8 _atom_sites.fract_transf_matrix[1][1] 0.014449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GNP A 1 1001 1001 GNP GNP . E 3 MG A 1 1002 1002 MG MG . F 2 GNP B 1 1001 1001 GNP GNP . G 3 MG B 1 1002 1002 MG MG . H 2 GNP C 1 1001 1001 GNP GNP . I 3 MG C 1 1002 1002 MG MG . J 4 HOH A 1 1101 15 HOH HOH . J 4 HOH A 2 1102 4 HOH HOH . J 4 HOH A 3 1103 14 HOH HOH . J 4 HOH A 4 1104 3 HOH HOH . J 4 HOH A 5 1105 2 HOH HOH . J 4 HOH A 6 1106 20 HOH HOH . J 4 HOH A 7 1107 1 HOH HOH . J 4 HOH A 8 1108 21 HOH HOH . J 4 HOH A 9 1109 5 HOH HOH . J 4 HOH A 10 1110 18 HOH HOH . J 4 HOH A 11 1111 19 HOH HOH . J 4 HOH A 12 1112 11 HOH HOH . J 4 HOH A 13 1113 26 HOH HOH . K 4 HOH B 1 1101 8 HOH HOH . K 4 HOH B 2 1102 6 HOH HOH . K 4 HOH B 3 1103 10 HOH HOH . K 4 HOH B 4 1104 7 HOH HOH . K 4 HOH B 5 1105 9 HOH HOH . K 4 HOH B 6 1106 23 HOH HOH . L 4 HOH C 1 1101 16 HOH HOH . L 4 HOH C 2 1102 13 HOH HOH . L 4 HOH C 3 1103 17 HOH HOH . L 4 HOH C 4 1104 27 HOH HOH . L 4 HOH C 5 1105 22 HOH HOH . L 4 HOH C 6 1106 25 HOH HOH . L 4 HOH C 7 1107 12 HOH HOH . L 4 HOH C 8 1108 28 HOH HOH . L 4 HOH C 9 1109 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.689 _atom_site.Cartn_y -23.17 _atom_site.Cartn_z -26.613 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #