data_6VC9 # _model_server_result.job_id zj1RQikdZ1mAbBqVM8tUAQ _model_server_result.datetime_utc '2024-11-26 03:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 6VC9 # _exptl.entry_id 6VC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.61 _cell.angle_gamma 90 _cell.entry_id 6VC9 _cell.length_a 118.31 _cell.length_b 74.22 _cell.length_c 148.326 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 4 5 3 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 1311 NAG 4 n D NAG 2 B 2 NAG A 1312 NAG 4 n D MAN 3 B 3 MAN A 1313 BMA 4 n D MAN 4 B 4 MAN A 1315 MAN 4 n D MAN 5 B 5 MAN A 1314 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf3 C SG CYS 25 A CYS 51 1_555 C SG CYS 31 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 C SG CYS 327 A CYS 353 1_555 C SG CYS 332 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? disulf ? disulf5 C SG CYS 339 A CYS 365 1_555 C SG CYS 361 A CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf6 C SG CYS 450 A CYS 476 1_555 C SG CYS 453 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 C ND2 ASN 285 A ASN 311 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 D O4 NAG . B NAG 2 1_555 D C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 D O3 MAN . B MAN 3 1_555 D C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 D O6 MAN . B MAN 3 1_555 D C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 C OD1 ASP 10 A ASP 36 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 C NE2 HIS 12 A HIS 38 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc3 C OD2 ASP 59 A ASP 85 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 C OD2 ASP 59 A ASP 85 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc5 C OD1 ASN 91 A ASN 117 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 C NE2 HIS 194 A HIS 220 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 C ND1 HIS 217 A HIS 243 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 E ZN ZN . A ZN 601 1_555 G O3 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 F ZN ZN . A ZN 602 1_555 G O4 PO4 . A PO4 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 353 n n P O2 PO4 sing 354 n n P O3 PO4 sing 355 n n P O4 PO4 sing 356 n n # _atom_sites.entry_id 6VC9 _atom_sites.fract_transf_matrix[1][1] 0.008452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000533 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 601 602 ZN ZN . F 5 ZN A 1 602 603 ZN ZN . G 6 PO4 A 1 603 604 PO4 PO4 . H 6 PO4 A 1 609 605 PO4 PO4 . I 6 PO4 A 1 610 606 PO4 PO4 . J 7 PG4 A 1 611 701 PG4 PG4 . K 8 EDO A 1 612 702 EDO EDO . L 9 HOH H 1 301 102 HOH HOH . L 9 HOH H 2 302 125 HOH HOH . L 9 HOH H 3 303 85 HOH HOH . L 9 HOH H 4 304 44 HOH HOH . L 9 HOH H 5 305 92 HOH HOH . L 9 HOH H 6 306 128 HOH HOH . L 9 HOH H 7 307 95 HOH HOH . L 9 HOH H 8 308 34 HOH HOH . L 9 HOH H 9 309 68 HOH HOH . M 9 HOH L 1 301 30 HOH HOH . M 9 HOH L 2 302 24 HOH HOH . M 9 HOH L 3 303 3 HOH HOH . M 9 HOH L 4 304 2 HOH HOH . M 9 HOH L 5 305 114 HOH HOH . M 9 HOH L 6 306 35 HOH HOH . M 9 HOH L 7 307 29 HOH HOH . M 9 HOH L 8 308 89 HOH HOH . M 9 HOH L 9 309 53 HOH HOH . M 9 HOH L 10 310 11 HOH HOH . M 9 HOH L 11 311 98 HOH HOH . M 9 HOH L 12 312 20 HOH HOH . M 9 HOH L 13 313 51 HOH HOH . M 9 HOH L 14 314 69 HOH HOH . M 9 HOH L 15 315 113 HOH HOH . N 9 HOH A 1 701 75 HOH HOH . N 9 HOH A 2 702 132 HOH HOH . N 9 HOH A 3 703 103 HOH HOH . N 9 HOH A 4 704 127 HOH HOH . N 9 HOH A 5 705 91 HOH HOH . N 9 HOH A 6 706 23 HOH HOH . N 9 HOH A 7 707 6 HOH HOH . N 9 HOH A 8 708 32 HOH HOH . N 9 HOH A 9 709 73 HOH HOH . N 9 HOH A 10 710 100 HOH HOH . N 9 HOH A 11 711 10 HOH HOH . N 9 HOH A 12 712 8 HOH HOH . N 9 HOH A 13 713 108 HOH HOH . N 9 HOH A 14 714 40 HOH HOH . N 9 HOH A 15 715 81 HOH HOH . N 9 HOH A 16 716 47 HOH HOH . N 9 HOH A 17 717 16 HOH HOH . N 9 HOH A 18 718 5 HOH HOH . N 9 HOH A 19 719 118 HOH HOH . N 9 HOH A 20 720 48 HOH HOH . N 9 HOH A 21 721 4 HOH HOH . N 9 HOH A 22 722 59 HOH HOH . N 9 HOH A 23 723 54 HOH HOH . N 9 HOH A 24 724 7 HOH HOH . N 9 HOH A 25 725 46 HOH HOH . N 9 HOH A 26 726 126 HOH HOH . N 9 HOH A 27 727 17 HOH HOH . N 9 HOH A 28 728 31 HOH HOH . N 9 HOH A 29 729 129 HOH HOH . N 9 HOH A 30 730 80 HOH HOH . N 9 HOH A 31 731 22 HOH HOH . N 9 HOH A 32 732 19 HOH HOH . N 9 HOH A 33 733 130 HOH HOH . N 9 HOH A 34 734 94 HOH HOH . N 9 HOH A 35 735 72 HOH HOH . N 9 HOH A 36 736 25 HOH HOH . N 9 HOH A 37 737 119 HOH HOH . N 9 HOH A 38 738 18 HOH HOH . N 9 HOH A 39 739 42 HOH HOH . N 9 HOH A 40 740 36 HOH HOH . N 9 HOH A 41 741 90 HOH HOH . N 9 HOH A 42 742 14 HOH HOH . N 9 HOH A 43 743 38 HOH HOH . N 9 HOH A 44 744 52 HOH HOH . N 9 HOH A 45 745 60 HOH HOH . N 9 HOH A 46 746 70 HOH HOH . N 9 HOH A 47 747 56 HOH HOH . N 9 HOH A 48 748 67 HOH HOH . N 9 HOH A 49 749 55 HOH HOH . N 9 HOH A 50 750 79 HOH HOH . N 9 HOH A 51 751 21 HOH HOH . N 9 HOH A 52 752 28 HOH HOH . N 9 HOH A 53 753 27 HOH HOH . N 9 HOH A 54 754 104 HOH HOH . N 9 HOH A 55 755 13 HOH HOH . N 9 HOH A 56 756 65 HOH HOH . N 9 HOH A 57 757 49 HOH HOH . N 9 HOH A 58 758 57 HOH HOH . N 9 HOH A 59 759 123 HOH HOH . N 9 HOH A 60 760 124 HOH HOH . N 9 HOH A 61 761 83 HOH HOH . N 9 HOH A 62 762 110 HOH HOH . N 9 HOH A 63 763 96 HOH HOH . N 9 HOH A 64 764 50 HOH HOH . N 9 HOH A 65 765 105 HOH HOH . N 9 HOH A 66 766 86 HOH HOH . N 9 HOH A 67 767 58 HOH HOH . N 9 HOH A 68 768 12 HOH HOH . N 9 HOH A 69 769 122 HOH HOH . N 9 HOH A 70 770 39 HOH HOH . N 9 HOH A 71 771 82 HOH HOH . N 9 HOH A 72 772 78 HOH HOH . N 9 HOH A 73 773 76 HOH HOH . N 9 HOH A 74 774 71 HOH HOH . N 9 HOH A 75 775 93 HOH HOH . N 9 HOH A 76 776 33 HOH HOH . N 9 HOH A 77 777 45 HOH HOH . N 9 HOH A 78 778 61 HOH HOH . N 9 HOH A 79 779 117 HOH HOH . N 9 HOH A 80 780 107 HOH HOH . N 9 HOH A 81 781 66 HOH HOH . N 9 HOH A 82 782 84 HOH HOH . N 9 HOH A 83 783 120 HOH HOH . N 9 HOH A 84 784 106 HOH HOH . N 9 HOH A 85 785 74 HOH HOH . N 9 HOH A 86 786 15 HOH HOH . N 9 HOH A 87 787 37 HOH HOH . N 9 HOH A 88 788 87 HOH HOH . N 9 HOH A 89 789 77 HOH HOH . N 9 HOH A 90 790 133 HOH HOH . N 9 HOH A 91 791 97 HOH HOH . N 9 HOH A 92 792 9 HOH HOH . N 9 HOH A 93 793 101 HOH HOH . N 9 HOH A 94 794 116 HOH HOH . N 9 HOH A 95 795 99 HOH HOH . N 9 HOH A 96 796 111 HOH HOH . N 9 HOH A 97 797 64 HOH HOH . N 9 HOH A 98 798 121 HOH HOH . N 9 HOH A 99 799 115 HOH HOH . N 9 HOH A 100 800 88 HOH HOH . N 9 HOH A 101 801 131 HOH HOH . N 9 HOH A 102 802 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 6 -25.809 -2.899 21.313 1 55.56 ? P PO4 603 A 1 HETATM 2 O O1 PO4 . . . G 6 -26.354 -1.713 20.534 1 64.35 ? O1 PO4 603 A 1 HETATM 3 O O2 PO4 . . . G 6 -24.33 -3.084 21.02 1 52.47 ? O2 PO4 603 A 1 HETATM 4 O O3 PO4 . . . G 6 -26.547 -4.146 20.929 1 51.99 ? O3 PO4 603 A 1 HETATM 5 O O4 PO4 . . . G 6 -26.021 -2.659 22.811 1 68.44 ? O4 PO4 603 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #