data_6VD5
#
_model_server_result.job_id            7cCNnPpaK3WcL64pmvqxiQ 
_model_server_result.datetime_utc      '2024-10-10 09:26:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vd5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6VD5 
#
_exptl.entry_id    6VD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VD5 
_cell.length_a            59.26 
_cell.length_b            67.996 
_cell.length_c            67.993 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,O 1 1 
B,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 K N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            CE1 
_struct_conn.ptnr1_label_comp_id            PHE 
_struct_conn.ptnr1_label_seq_id             97 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PHE 
_struct_conn.ptnr1_auth_seq_id              97 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            CMC 
_struct_conn.ptnr2_label_comp_id            MH0 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MH0 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        B 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.495 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6VD5 
_atom_sites.fract_transf_matrix[1][1]    0.016875 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014707 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MH0 A 1 201 201 MH0 MH0 . 
D 3 EDO A 1 202 301 EDO EDO . 
E 3 EDO A 1 203 401 EDO EDO . 
F 4 T6C A 1 204 501 T6C T6C . 
G 3 EDO A 1 205 601 EDO EDO . 
H 5 SO4 A 1 206 1 SO4 SO4 . 
I 5 SO4 A 1 207 2 SO4 SO4 . 
J 5 SO4 A 1 208 3 SO4 SO4 . 
K 3 EDO B 1 301 301 EDO EDO . 
L 4 T6C B 1 302 401 T6C T6C . 
M 2 MH0 B 1 303 501 MH0 MH0 . 
N 5 SO4 B 1 304 4 SO4 SO4 . 
O 6 HOH A 1 301 3 HOH HOH . 
O 6 HOH A 2 302 100 HOH HOH . 
O 6 HOH A 3 303 122 HOH HOH . 
O 6 HOH A 4 304 145 HOH HOH . 
O 6 HOH A 5 305 163 HOH HOH . 
O 6 HOH A 6 306 121 HOH HOH . 
O 6 HOH A 7 307 113 HOH HOH . 
O 6 HOH A 8 308 1 HOH HOH . 
O 6 HOH A 9 309 124 HOH HOH . 
O 6 HOH A 10 310 39 HOH HOH . 
O 6 HOH A 11 311 4 HOH HOH . 
O 6 HOH A 12 312 140 HOH HOH . 
O 6 HOH A 13 313 32 HOH HOH . 
O 6 HOH A 14 314 97 HOH HOH . 
O 6 HOH A 15 315 147 HOH HOH . 
O 6 HOH A 16 316 123 HOH HOH . 
O 6 HOH A 17 317 2 HOH HOH . 
O 6 HOH A 18 318 104 HOH HOH . 
O 6 HOH A 19 319 138 HOH HOH . 
O 6 HOH A 20 320 143 HOH HOH . 
O 6 HOH A 21 321 72 HOH HOH . 
O 6 HOH A 22 322 5 HOH HOH . 
O 6 HOH A 23 323 30 HOH HOH . 
O 6 HOH A 24 324 56 HOH HOH . 
O 6 HOH A 25 325 102 HOH HOH . 
O 6 HOH A 26 326 81 HOH HOH . 
O 6 HOH A 27 327 35 HOH HOH . 
O 6 HOH A 28 328 93 HOH HOH . 
O 6 HOH A 29 329 120 HOH HOH . 
O 6 HOH A 30 330 87 HOH HOH . 
O 6 HOH A 31 331 22 HOH HOH . 
O 6 HOH A 32 332 161 HOH HOH . 
O 6 HOH A 33 333 125 HOH HOH . 
O 6 HOH A 34 334 34 HOH HOH . 
O 6 HOH A 35 335 51 HOH HOH . 
O 6 HOH A 36 336 146 HOH HOH . 
O 6 HOH A 37 337 49 HOH HOH . 
O 6 HOH A 38 338 20 HOH HOH . 
O 6 HOH A 39 339 160 HOH HOH . 
O 6 HOH A 40 340 23 HOH HOH . 
O 6 HOH A 41 341 55 HOH HOH . 
O 6 HOH A 42 342 50 HOH HOH . 
O 6 HOH A 43 343 24 HOH HOH . 
O 6 HOH A 44 344 36 HOH HOH . 
O 6 HOH A 45 345 141 HOH HOH . 
O 6 HOH A 46 346 103 HOH HOH . 
O 6 HOH A 47 347 137 HOH HOH . 
O 6 HOH A 48 348 91 HOH HOH . 
O 6 HOH A 49 349 46 HOH HOH . 
O 6 HOH A 50 350 59 HOH HOH . 
O 6 HOH A 51 351 142 HOH HOH . 
O 6 HOH A 52 352 61 HOH HOH . 
O 6 HOH A 53 353 77 HOH HOH . 
O 6 HOH A 54 354 107 HOH HOH . 
O 6 HOH A 55 355 148 HOH HOH . 
O 6 HOH A 56 356 70 HOH HOH . 
O 6 HOH A 57 357 136 HOH HOH . 
O 6 HOH A 58 358 44 HOH HOH . 
O 6 HOH A 59 359 54 HOH HOH . 
O 6 HOH A 60 360 64 HOH HOH . 
O 6 HOH A 61 361 73 HOH HOH . 
O 6 HOH A 62 362 168 HOH HOH . 
O 6 HOH A 63 363 130 HOH HOH . 
O 6 HOH A 64 364 131 HOH HOH . 
O 6 HOH A 65 365 11 HOH HOH . 
O 6 HOH A 66 366 43 HOH HOH . 
O 6 HOH A 67 367 116 HOH HOH . 
O 6 HOH A 68 368 62 HOH HOH . 
O 6 HOH A 69 369 129 HOH HOH . 
O 6 HOH A 70 370 126 HOH HOH . 
O 6 HOH A 71 371 139 HOH HOH . 
O 6 HOH A 72 372 167 HOH HOH . 
O 6 HOH A 73 373 58 HOH HOH . 
O 6 HOH A 74 374 99 HOH HOH . 
O 6 HOH A 75 375 112 HOH HOH . 
O 6 HOH A 76 376 128 HOH HOH . 
O 6 HOH A 77 377 119 HOH HOH . 
O 6 HOH A 78 378 166 HOH HOH . 
O 6 HOH A 79 379 108 HOH HOH . 
O 6 HOH A 80 380 118 HOH HOH . 
O 6 HOH A 81 381 85 HOH HOH . 
O 6 HOH A 82 382 78 HOH HOH . 
O 6 HOH A 83 383 84 HOH HOH . 
O 6 HOH A 84 384 52 HOH HOH . 
O 6 HOH A 85 385 74 HOH HOH . 
O 6 HOH A 86 386 95 HOH HOH . 
P 6 HOH B 1 401 178 HOH HOH . 
P 6 HOH B 2 402 28 HOH HOH . 
P 6 HOH B 3 403 174 HOH HOH . 
P 6 HOH B 4 404 94 HOH HOH . 
P 6 HOH B 5 405 152 HOH HOH . 
P 6 HOH B 6 406 177 HOH HOH . 
P 6 HOH B 7 407 6 HOH HOH . 
P 6 HOH B 8 408 132 HOH HOH . 
P 6 HOH B 9 409 14 HOH HOH . 
P 6 HOH B 10 410 171 HOH HOH . 
P 6 HOH B 11 411 7 HOH HOH . 
P 6 HOH B 12 412 150 HOH HOH . 
P 6 HOH B 13 413 169 HOH HOH . 
P 6 HOH B 14 414 21 HOH HOH . 
P 6 HOH B 15 415 106 HOH HOH . 
P 6 HOH B 16 416 40 HOH HOH . 
P 6 HOH B 17 417 8 HOH HOH . 
P 6 HOH B 18 418 79 HOH HOH . 
P 6 HOH B 19 419 57 HOH HOH . 
P 6 HOH B 20 420 63 HOH HOH . 
P 6 HOH B 21 421 90 HOH HOH . 
P 6 HOH B 22 422 45 HOH HOH . 
P 6 HOH B 23 423 110 HOH HOH . 
P 6 HOH B 24 424 165 HOH HOH . 
P 6 HOH B 25 425 135 HOH HOH . 
P 6 HOH B 26 426 25 HOH HOH . 
P 6 HOH B 27 427 10 HOH HOH . 
P 6 HOH B 28 428 31 HOH HOH . 
P 6 HOH B 29 429 38 HOH HOH . 
P 6 HOH B 30 430 26 HOH HOH . 
P 6 HOH B 31 431 68 HOH HOH . 
P 6 HOH B 32 432 66 HOH HOH . 
P 6 HOH B 33 433 133 HOH HOH . 
P 6 HOH B 34 434 27 HOH HOH . 
P 6 HOH B 35 435 53 HOH HOH . 
P 6 HOH B 36 436 154 HOH HOH . 
P 6 HOH B 37 437 155 HOH HOH . 
P 6 HOH B 38 438 101 HOH HOH . 
P 6 HOH B 39 439 156 HOH HOH . 
P 6 HOH B 40 440 175 HOH HOH . 
P 6 HOH B 41 441 109 HOH HOH . 
P 6 HOH B 42 442 71 HOH HOH . 
P 6 HOH B 43 443 47 HOH HOH . 
P 6 HOH B 44 444 144 HOH HOH . 
P 6 HOH B 45 445 42 HOH HOH . 
P 6 HOH B 46 446 172 HOH HOH . 
P 6 HOH B 47 447 170 HOH HOH . 
P 6 HOH B 48 448 37 HOH HOH . 
P 6 HOH B 49 449 127 HOH HOH . 
P 6 HOH B 50 450 151 HOH HOH . 
P 6 HOH B 51 451 65 HOH HOH . 
P 6 HOH B 52 452 82 HOH HOH . 
P 6 HOH B 53 453 67 HOH HOH . 
P 6 HOH B 54 454 19 HOH HOH . 
P 6 HOH B 55 455 41 HOH HOH . 
P 6 HOH B 56 456 164 HOH HOH . 
P 6 HOH B 57 457 96 HOH HOH . 
P 6 HOH B 58 458 105 HOH HOH . 
P 6 HOH B 59 459 75 HOH HOH . 
P 6 HOH B 60 460 134 HOH HOH . 
P 6 HOH B 61 461 149 HOH HOH . 
P 6 HOH B 62 462 98 HOH HOH . 
P 6 HOH B 63 463 86 HOH HOH . 
P 6 HOH B 64 464 117 HOH HOH . 
P 6 HOH B 65 465 159 HOH HOH . 
P 6 HOH B 66 466 29 HOH HOH . 
P 6 HOH B 67 467 9 HOH HOH . 
P 6 HOH B 68 468 157 HOH HOH . 
P 6 HOH B 69 469 179 HOH HOH . 
P 6 HOH B 70 470 60 HOH HOH . 
P 6 HOH B 71 471 153 HOH HOH . 
P 6 HOH B 72 472 80 HOH HOH . 
P 6 HOH B 73 473 176 HOH HOH . 
P 6 HOH B 74 474 158 HOH HOH . 
P 6 HOH B 75 475 173 HOH HOH . 
P 6 HOH B 76 476 76 HOH HOH . 
P 6 HOH B 77 477 69 HOH HOH . 
P 6 HOH B 78 478 33 HOH HOH . 
P 6 HOH B 79 479 88 HOH HOH . 
P 6 HOH B 80 480 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -17.732 -17.682 19.906 1 21.88 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . D 3 -17.96 -16.917 18.701 1 20.76 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . D 3 -18.625 -18.935 19.866 1 23.44 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . D 3 -19.985 -18.484 19.949 1 30 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#