data_6VD6
#
_model_server_result.job_id            MPan1w7oFSgl_k3PGmLyDA 
_model_server_result.datetime_utc      '2024-10-10 07:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vd6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    6VD6 
#
_exptl.entry_id    6VD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              139.109 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            P-NITROPHENOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VD6 
_cell.length_a            59.138 
_cell.length_b            67.927 
_cell.length_c            67.867 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE MH0 . A MH0 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 H FE MH0 . B MH0 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
#
_chem_comp.formula           'C6 H5 N O3' 
_chem_comp.formula_weight    139.109 
_chem_comp.id                NPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              P-NITROPHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NPO doub 332 n y 
C1 C6 NPO sing 333 n y 
C1 N1 NPO sing 334 n n 
C2 C3 NPO sing 335 n y 
C2 H2 NPO sing 336 n n 
C3 C4 NPO doub 337 n y 
C3 H3 NPO sing 338 n n 
C4 C5 NPO sing 339 n y 
C4 OH NPO sing 340 n n 
C5 C6 NPO doub 341 n y 
C5 H5 NPO sing 342 n n 
C6 H6 NPO sing 343 n n 
OH HO NPO sing 344 n n 
N1 O2 NPO sing 345 n n 
N1 O3 NPO doub 346 n n 
#
_atom_sites.entry_id                     6VD6 
_atom_sites.fract_transf_matrix[1][1]    0.01691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MH0 A 1 201 201 MH0 MH0 . 
D 3 NPO A 1 202 301 NPO NPO . 
E 4 EDO A 1 203 401 EDO EDO . 
F 5 SO4 A 1 204 1 SO4 SO4 . 
G 5 SO4 A 1 205 2 SO4 SO4 . 
H 2 MH0 B 1 201 201 MH0 MH0 . 
I 3 NPO B 1 202 301 NPO NPO . 
J 4 EDO B 1 203 401 EDO EDO . 
K 6 HOH A 1 301 25 HOH HOH . 
K 6 HOH A 2 302 28 HOH HOH . 
K 6 HOH A 3 303 78 HOH HOH . 
K 6 HOH A 4 304 76 HOH HOH . 
K 6 HOH A 5 305 24 HOH HOH . 
K 6 HOH A 6 306 2 HOH HOH . 
K 6 HOH A 7 307 154 HOH HOH . 
K 6 HOH A 8 308 98 HOH HOH . 
K 6 HOH A 9 309 152 HOH HOH . 
K 6 HOH A 10 310 50 HOH HOH . 
K 6 HOH A 11 311 51 HOH HOH . 
K 6 HOH A 12 312 117 HOH HOH . 
K 6 HOH A 13 313 29 HOH HOH . 
K 6 HOH A 14 314 96 HOH HOH . 
K 6 HOH A 15 315 118 HOH HOH . 
K 6 HOH A 16 316 157 HOH HOH . 
K 6 HOH A 17 317 26 HOH HOH . 
K 6 HOH A 18 318 153 HOH HOH . 
K 6 HOH A 19 319 12 HOH HOH . 
K 6 HOH A 20 320 21 HOH HOH . 
K 6 HOH A 21 321 109 HOH HOH . 
K 6 HOH A 22 322 17 HOH HOH . 
K 6 HOH A 23 323 38 HOH HOH . 
K 6 HOH A 24 324 94 HOH HOH . 
K 6 HOH A 25 325 34 HOH HOH . 
K 6 HOH A 26 326 95 HOH HOH . 
K 6 HOH A 27 327 49 HOH HOH . 
K 6 HOH A 28 328 53 HOH HOH . 
K 6 HOH A 29 329 80 HOH HOH . 
K 6 HOH A 30 330 11 HOH HOH . 
K 6 HOH A 31 331 10 HOH HOH . 
K 6 HOH A 32 332 90 HOH HOH . 
K 6 HOH A 33 333 155 HOH HOH . 
K 6 HOH A 34 334 102 HOH HOH . 
K 6 HOH A 35 335 149 HOH HOH . 
K 6 HOH A 36 336 72 HOH HOH . 
K 6 HOH A 37 337 14 HOH HOH . 
K 6 HOH A 38 338 42 HOH HOH . 
K 6 HOH A 39 339 126 HOH HOH . 
K 6 HOH A 40 340 54 HOH HOH . 
K 6 HOH A 41 341 77 HOH HOH . 
K 6 HOH A 42 342 23 HOH HOH . 
K 6 HOH A 43 343 108 HOH HOH . 
K 6 HOH A 44 344 59 HOH HOH . 
K 6 HOH A 45 345 58 HOH HOH . 
K 6 HOH A 46 346 127 HOH HOH . 
K 6 HOH A 47 347 16 HOH HOH . 
K 6 HOH A 48 348 129 HOH HOH . 
K 6 HOH A 49 349 35 HOH HOH . 
K 6 HOH A 50 350 170 HOH HOH . 
K 6 HOH A 51 351 100 HOH HOH . 
K 6 HOH A 52 352 8 HOH HOH . 
K 6 HOH A 53 353 137 HOH HOH . 
K 6 HOH A 54 354 142 HOH HOH . 
K 6 HOH A 55 355 125 HOH HOH . 
K 6 HOH A 56 356 68 HOH HOH . 
K 6 HOH A 57 357 70 HOH HOH . 
K 6 HOH A 58 358 171 HOH HOH . 
K 6 HOH A 59 359 115 HOH HOH . 
K 6 HOH A 60 360 97 HOH HOH . 
K 6 HOH A 61 361 3 HOH HOH . 
K 6 HOH A 62 362 19 HOH HOH . 
K 6 HOH A 63 363 41 HOH HOH . 
K 6 HOH A 64 364 101 HOH HOH . 
K 6 HOH A 65 365 57 HOH HOH . 
K 6 HOH A 66 366 124 HOH HOH . 
K 6 HOH A 67 367 63 HOH HOH . 
K 6 HOH A 68 368 4 HOH HOH . 
K 6 HOH A 69 369 104 HOH HOH . 
K 6 HOH A 70 370 169 HOH HOH . 
K 6 HOH A 71 371 144 HOH HOH . 
K 6 HOH A 72 372 1 HOH HOH . 
K 6 HOH A 73 373 86 HOH HOH . 
K 6 HOH A 74 374 69 HOH HOH . 
K 6 HOH A 75 375 92 HOH HOH . 
K 6 HOH A 76 376 150 HOH HOH . 
K 6 HOH A 77 377 107 HOH HOH . 
K 6 HOH A 78 378 128 HOH HOH . 
K 6 HOH A 79 379 62 HOH HOH . 
K 6 HOH A 80 380 46 HOH HOH . 
K 6 HOH A 81 381 110 HOH HOH . 
K 6 HOH A 82 382 85 HOH HOH . 
K 6 HOH A 83 383 131 HOH HOH . 
K 6 HOH A 84 384 156 HOH HOH . 
K 6 HOH A 85 385 36 HOH HOH . 
K 6 HOH A 86 386 151 HOH HOH . 
K 6 HOH A 87 387 106 HOH HOH . 
K 6 HOH A 88 388 173 HOH HOH . 
K 6 HOH A 89 389 139 HOH HOH . 
K 6 HOH A 90 390 83 HOH HOH . 
K 6 HOH A 91 391 74 HOH HOH . 
K 6 HOH A 92 392 103 HOH HOH . 
K 6 HOH A 93 393 79 HOH HOH . 
L 6 HOH B 1 301 20 HOH HOH . 
L 6 HOH B 2 302 158 HOH HOH . 
L 6 HOH B 3 303 5 HOH HOH . 
L 6 HOH B 4 304 55 HOH HOH . 
L 6 HOH B 5 305 145 HOH HOH . 
L 6 HOH B 6 306 130 HOH HOH . 
L 6 HOH B 7 307 60 HOH HOH . 
L 6 HOH B 8 308 166 HOH HOH . 
L 6 HOH B 9 309 164 HOH HOH . 
L 6 HOH B 10 310 147 HOH HOH . 
L 6 HOH B 11 311 167 HOH HOH . 
L 6 HOH B 12 312 40 HOH HOH . 
L 6 HOH B 13 313 87 HOH HOH . 
L 6 HOH B 14 314 6 HOH HOH . 
L 6 HOH B 15 315 123 HOH HOH . 
L 6 HOH B 16 316 160 HOH HOH . 
L 6 HOH B 17 317 162 HOH HOH . 
L 6 HOH B 18 318 66 HOH HOH . 
L 6 HOH B 19 319 141 HOH HOH . 
L 6 HOH B 20 320 30 HOH HOH . 
L 6 HOH B 21 321 91 HOH HOH . 
L 6 HOH B 22 322 44 HOH HOH . 
L 6 HOH B 23 323 48 HOH HOH . 
L 6 HOH B 24 324 99 HOH HOH . 
L 6 HOH B 25 325 47 HOH HOH . 
L 6 HOH B 26 326 32 HOH HOH . 
L 6 HOH B 27 327 84 HOH HOH . 
L 6 HOH B 28 328 9 HOH HOH . 
L 6 HOH B 29 329 61 HOH HOH . 
L 6 HOH B 30 330 119 HOH HOH . 
L 6 HOH B 31 331 67 HOH HOH . 
L 6 HOH B 32 332 43 HOH HOH . 
L 6 HOH B 33 333 33 HOH HOH . 
L 6 HOH B 34 334 113 HOH HOH . 
L 6 HOH B 35 335 22 HOH HOH . 
L 6 HOH B 36 336 111 HOH HOH . 
L 6 HOH B 37 337 31 HOH HOH . 
L 6 HOH B 38 338 168 HOH HOH . 
L 6 HOH B 39 339 138 HOH HOH . 
L 6 HOH B 40 340 13 HOH HOH . 
L 6 HOH B 41 341 7 HOH HOH . 
L 6 HOH B 42 342 88 HOH HOH . 
L 6 HOH B 43 343 64 HOH HOH . 
L 6 HOH B 44 344 18 HOH HOH . 
L 6 HOH B 45 345 132 HOH HOH . 
L 6 HOH B 46 346 15 HOH HOH . 
L 6 HOH B 47 347 65 HOH HOH . 
L 6 HOH B 48 348 163 HOH HOH . 
L 6 HOH B 49 349 81 HOH HOH . 
L 6 HOH B 50 350 75 HOH HOH . 
L 6 HOH B 51 351 112 HOH HOH . 
L 6 HOH B 52 352 135 HOH HOH . 
L 6 HOH B 53 353 159 HOH HOH . 
L 6 HOH B 54 354 133 HOH HOH . 
L 6 HOH B 55 355 82 HOH HOH . 
L 6 HOH B 56 356 148 HOH HOH . 
L 6 HOH B 57 357 136 HOH HOH . 
L 6 HOH B 58 358 89 HOH HOH . 
L 6 HOH B 59 359 172 HOH HOH . 
L 6 HOH B 60 360 73 HOH HOH . 
L 6 HOH B 61 361 52 HOH HOH . 
L 6 HOH B 62 362 120 HOH HOH . 
L 6 HOH B 63 363 39 HOH HOH . 
L 6 HOH B 64 364 37 HOH HOH . 
L 6 HOH B 65 365 143 HOH HOH . 
L 6 HOH B 66 366 105 HOH HOH . 
L 6 HOH B 67 367 114 HOH HOH . 
L 6 HOH B 68 368 165 HOH HOH . 
L 6 HOH B 69 369 122 HOH HOH . 
L 6 HOH B 70 370 140 HOH HOH . 
L 6 HOH B 71 371 161 HOH HOH . 
L 6 HOH B 72 372 56 HOH HOH . 
L 6 HOH B 73 373 71 HOH HOH . 
L 6 HOH B 74 374 116 HOH HOH . 
L 6 HOH B 75 375 93 HOH HOH . 
L 6 HOH B 76 376 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NPO . . . I 3 6.817 1.445 -15.894 1 24.36 ? C1 NPO 202 B 1 
HETATM 2 C C2 NPO . . . I 3 5.802 0.534 -15.611 1 24.28 ? C2 NPO 202 B 1 
HETATM 3 C C3 NPO . . . I 3 5.283 0.495 -14.333 1 25.35 ? C3 NPO 202 B 1 
HETATM 4 C C4 NPO . . . I 3 5.738 1.368 -13.355 1 24.51 ? C4 NPO 202 B 1 
HETATM 5 C C5 NPO . . . I 3 6.753 2.267 -13.651 1 22.5 ? C5 NPO 202 B 1 
HETATM 6 C C6 NPO . . . I 3 7.29 2.326 -14.92 1 23.16 ? C6 NPO 202 B 1 
HETATM 7 O OH NPO . . . I 3 5.196 1.32 -12.106 1 27.81 ? OH NPO 202 B 1 
HETATM 8 N N1 NPO . . . I 3 7.405 1.469 -17.243 1 23.6 ? N1 NPO 202 B 1 
HETATM 9 O O2 NPO . . . I 3 6.844 0.841 -18.136 1 23.69 ? O2 NPO 202 B 1 
HETATM 10 O O3 NPO . . . I 3 8.454 2.072 -17.416 1 27.53 ? O3 NPO 202 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#