data_6VD8 # _model_server_result.job_id -wQqv-v0Zzxt7pu-h9qLmQ _model_server_result.datetime_utc '2024-10-20 07:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6VD8 # _exptl.entry_id 6VD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VD8 _cell.length_a 36.916 _cell.length_b 58.247 _cell.length_c 72.014 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -36.916 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 29 A HIS 234 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A OD1 ASP 30 A ASP 235 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 A NE2 HIS 32 A HIS 237 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc4 A ND1 HIS 46 A HIS 251 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc5 A NE2 HIS 68 A HIS 273 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 A OE1 GLU 74 A GLU 279 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc7 A OE2 GLU 74 A GLU 279 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc8 A NE2 HIS 75 A HIS 280 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc9 A OE1 GLU 81 A GLU 286 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc10 A SG CYS 85 A CYS 290 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 C ZN ZN . A ZN 301 3_656 B OE2 GLU 17 B GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc12 C ZN ZN . A ZN 301 1_555 B NE2 HIS 75 B HIS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc13 E ZN ZN . A ZN 303 1_655 B NE2 HIS 68 B HIS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc14 E ZN ZN . A ZN 303 1_655 B OE2 GLU 74 B GLU 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc15 B NE2 HIS 29 B HIS 234 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc16 B OD1 ASP 30 B ASP 235 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc17 B NE2 HIS 32 B HIS 237 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc18 B ND1 HIS 46 B HIS 251 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc19 B OE1 GLU 81 B GLU 286 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc20 B SG CYS 85 B CYS 290 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc21 G ZN ZN . B ZN 302 1_555 I O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VD8 _atom_sites.fract_transf_matrix[1][1] 0.027089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 6 ZN ZN . D 2 ZN A 1 302 8 ZN ZN . E 2 ZN A 1 303 10 ZN ZN . F 2 ZN B 1 301 4 ZN ZN . G 2 ZN B 1 302 9 ZN ZN . H 3 HOH A 1 401 31 HOH HOH . H 3 HOH A 2 402 29 HOH HOH . H 3 HOH A 3 403 36 HOH HOH . H 3 HOH A 4 404 30 HOH HOH . H 3 HOH A 5 405 32 HOH HOH . H 3 HOH A 6 406 33 HOH HOH . H 3 HOH A 7 407 42 HOH HOH . H 3 HOH A 8 408 37 HOH HOH . H 3 HOH A 9 409 38 HOH HOH . H 3 HOH A 10 410 40 HOH HOH . I 3 HOH B 1 401 3 HOH HOH . I 3 HOH B 2 402 17 HOH HOH . I 3 HOH B 3 403 4 HOH HOH . I 3 HOH B 4 404 26 HOH HOH . I 3 HOH B 5 405 8 HOH HOH . I 3 HOH B 6 406 27 HOH HOH . I 3 HOH B 7 407 43 HOH HOH . I 3 HOH B 8 408 16 HOH HOH . I 3 HOH B 9 409 9 HOH HOH . I 3 HOH B 10 410 7 HOH HOH . I 3 HOH B 11 411 39 HOH HOH . I 3 HOH B 12 412 22 HOH HOH . I 3 HOH B 13 413 21 HOH HOH . I 3 HOH B 14 414 41 HOH HOH . I 3 HOH B 15 415 14 HOH HOH . I 3 HOH B 16 416 6 HOH HOH . I 3 HOH B 17 417 28 HOH HOH . I 3 HOH B 18 418 13 HOH HOH . I 3 HOH B 19 419 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.278 _atom_site.Cartn_y -7.4 _atom_site.Cartn_z 50.28 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 529 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #