data_6VDS
#
_model_server_result.job_id            mJIeH5keo6BdNZFcc9Fc2Q 
_model_server_result.datetime_utc      '2024-10-10 10:29:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6VDS 
#
_exptl.entry_id    6VDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              564.413 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE(III) DEUTEROPORPHYRIN IX' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VDS 
_cell.length_a            59.562 
_cell.length_b            67.491 
_cell.length_c            67.951 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 C FE FDE . A FDE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A NE2 HIS 89 A HIS 89 1_555 C FE FDE . A FDE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc3 B NE2 HIS 55 B HIS 55 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 B NE2 HIS 55 B HIS 55 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 B NE2 HIS 89 B HIS 89 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 B NE2 HIS 89 B HIS 89 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C30 H28 Fe N4 O4' 
_chem_comp.formula_weight    564.413 
_chem_comp.id                FDE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE(III) DEUTEROPORPHYRIN IX' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A FDE sing 92 n n 
CHA C4D FDE doub 93 n n 
CHA HHA FDE sing 94 n n 
C1A C2A FDE sing 95 n n 
C1A NA FDE doub 96 n n 
C2A CAA FDE sing 97 n n 
C2A C3A FDE doub 98 n n 
CAA CBA FDE sing 99 n n 
CAA HAA1 FDE sing 100 n n 
CAA HAA2 FDE sing 101 n n 
CBA CGA FDE sing 102 n n 
CBA HBA1 FDE sing 103 n n 
CBA HBA2 FDE sing 104 n n 
CGA O1A FDE sing 105 n n 
CGA O2A FDE doub 106 n n 
O1A H1A FDE sing 107 n n 
C3A CMA FDE sing 108 n n 
C3A C4A FDE sing 109 n n 
CMA HMA1 FDE sing 110 n n 
CMA HMA2 FDE sing 111 n n 
CMA HMA3 FDE sing 112 n n 
C4A NA FDE sing 113 n n 
C4A CHB FDE doub 114 n n 
NA FE FDE sing 115 n n 
CHB C1B FDE sing 116 n n 
CHB HHB FDE sing 117 n n 
C1B C2B FDE doub 118 n y 
C1B NB FDE sing 119 n y 
C2B C3B FDE sing 120 n y 
C2B H2B FDE sing 121 n n 
C3B CME FDE sing 122 n n 
C3B C4B FDE doub 123 n y 
CME HME1 FDE sing 124 n n 
CME HME2 FDE sing 125 n n 
CME HME3 FDE sing 126 n n 
C4B NB FDE sing 127 n y 
C4B CHC FDE sing 128 n n 
NB FE FDE sing 129 n n 
CHC C1C FDE doub 130 n n 
CHC HHC FDE sing 131 n n 
C1C C2C FDE sing 132 n n 
C1C NC FDE sing 133 n n 
C2C C3C FDE doub 134 n n 
C2C H2C FDE sing 135 n n 
C3C CMF FDE sing 136 n n 
C3C C4C FDE sing 137 n n 
CMF HMF1 FDE sing 138 n n 
CMF HMF2 FDE sing 139 n n 
CMF HMF3 FDE sing 140 n n 
C4C NC FDE doub 141 n n 
C4C CHD FDE sing 142 n n 
NC FE FDE sing 143 n n 
CHD C1D FDE doub 144 n n 
CHD HHD FDE sing 145 n n 
C1D C2D FDE sing 146 n n 
C1D ND FDE sing 147 n n 
C2D CMD FDE sing 148 n n 
C2D C3D FDE doub 149 n n 
CMD HMD1 FDE sing 150 n n 
CMD HMD2 FDE sing 151 n n 
CMD HMD3 FDE sing 152 n n 
C3D CAD FDE sing 153 n n 
C3D C4D FDE sing 154 n n 
CAD CBD FDE sing 155 n n 
CAD HAD1 FDE sing 156 n n 
CAD HAD2 FDE sing 157 n n 
CBD CGD FDE sing 158 n n 
CBD HBD1 FDE sing 159 n n 
CBD HBD2 FDE sing 160 n n 
CGD O1D FDE sing 161 n n 
CGD O2D FDE doub 162 n n 
O1D H1D FDE sing 163 n n 
C4D ND FDE sing 164 n n 
ND FE FDE sing 165 n n 
#
_atom_sites.entry_id                     6VDS 
_atom_sites.fract_transf_matrix[1][1]    0.016789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FDE A 1 201 201 FDE FDE . 
D 3 MWJ A 1 202 301 MWJ MWJ . 
E 4 EDO A 1 203 401 EDO EDO . 
F 4 EDO A 1 204 501 EDO EDO . 
G 4 EDO A 1 205 601 EDO EDO . 
H 4 EDO A 1 206 701 EDO EDO . 
I 5 SO4 A 1 207 1 SO4 SO4 . 
J 5 SO4 A 1 208 2 SO4 SO4 . 
K 2 FDE B 1 201 201 FDE FDE . 
L 3 MWJ B 1 202 301 MWJ MWJ . 
M 4 EDO B 1 203 401 EDO EDO . 
N 4 EDO B 1 204 501 EDO EDO . 
O 4 EDO B 1 205 601 EDO EDO . 
P 4 EDO B 1 206 701 EDO EDO . 
Q 6 HOH A 1 301 63 HOH HOH . 
Q 6 HOH A 2 302 88 HOH HOH . 
Q 6 HOH A 3 303 37 HOH HOH . 
Q 6 HOH A 4 304 65 HOH HOH . 
Q 6 HOH A 5 305 85 HOH HOH . 
Q 6 HOH A 6 306 81 HOH HOH . 
Q 6 HOH A 7 307 61 HOH HOH . 
Q 6 HOH A 8 308 47 HOH HOH . 
Q 6 HOH A 9 309 69 HOH HOH . 
Q 6 HOH A 10 310 70 HOH HOH . 
Q 6 HOH A 11 311 38 HOH HOH . 
Q 6 HOH A 12 312 74 HOH HOH . 
Q 6 HOH A 13 313 66 HOH HOH . 
Q 6 HOH A 14 314 21 HOH HOH . 
Q 6 HOH A 15 315 64 HOH HOH . 
Q 6 HOH A 16 316 87 HOH HOH . 
Q 6 HOH A 17 317 56 HOH HOH . 
Q 6 HOH A 18 318 71 HOH HOH . 
Q 6 HOH A 19 319 4 HOH HOH . 
Q 6 HOH A 20 320 17 HOH HOH . 
Q 6 HOH A 21 321 75 HOH HOH . 
Q 6 HOH A 22 322 2 HOH HOH . 
Q 6 HOH A 23 323 32 HOH HOH . 
Q 6 HOH A 24 324 14 HOH HOH . 
Q 6 HOH A 25 325 45 HOH HOH . 
Q 6 HOH A 26 326 1 HOH HOH . 
Q 6 HOH A 27 327 67 HOH HOH . 
Q 6 HOH A 28 328 8 HOH HOH . 
Q 6 HOH A 29 329 73 HOH HOH . 
Q 6 HOH A 30 330 43 HOH HOH . 
Q 6 HOH A 31 331 57 HOH HOH . 
Q 6 HOH A 32 332 58 HOH HOH . 
Q 6 HOH A 33 333 48 HOH HOH . 
Q 6 HOH A 34 334 82 HOH HOH . 
Q 6 HOH A 35 335 39 HOH HOH . 
Q 6 HOH A 36 336 3 HOH HOH . 
Q 6 HOH A 37 337 83 HOH HOH . 
Q 6 HOH A 38 338 50 HOH HOH . 
Q 6 HOH A 39 339 59 HOH HOH . 
Q 6 HOH A 40 340 53 HOH HOH . 
Q 6 HOH A 41 341 13 HOH HOH . 
Q 6 HOH A 42 342 60 HOH HOH . 
Q 6 HOH A 43 343 72 HOH HOH . 
Q 6 HOH A 44 344 68 HOH HOH . 
R 6 HOH B 1 301 27 HOH HOH . 
R 6 HOH B 2 302 91 HOH HOH . 
R 6 HOH B 3 303 55 HOH HOH . 
R 6 HOH B 4 304 22 HOH HOH . 
R 6 HOH B 5 305 62 HOH HOH . 
R 6 HOH B 6 306 26 HOH HOH . 
R 6 HOH B 7 307 84 HOH HOH . 
R 6 HOH B 8 308 19 HOH HOH . 
R 6 HOH B 9 309 35 HOH HOH . 
R 6 HOH B 10 310 77 HOH HOH . 
R 6 HOH B 11 311 78 HOH HOH . 
R 6 HOH B 12 312 76 HOH HOH . 
R 6 HOH B 13 313 41 HOH HOH . 
R 6 HOH B 14 314 12 HOH HOH . 
R 6 HOH B 15 315 25 HOH HOH . 
R 6 HOH B 16 316 5 HOH HOH . 
R 6 HOH B 17 317 20 HOH HOH . 
R 6 HOH B 18 318 36 HOH HOH . 
R 6 HOH B 19 319 40 HOH HOH . 
R 6 HOH B 20 320 90 HOH HOH . 
R 6 HOH B 21 321 89 HOH HOH . 
R 6 HOH B 22 322 24 HOH HOH . 
R 6 HOH B 23 323 80 HOH HOH . 
R 6 HOH B 24 324 15 HOH HOH . 
R 6 HOH B 25 325 7 HOH HOH . 
R 6 HOH B 26 326 79 HOH HOH . 
R 6 HOH B 27 327 86 HOH HOH . 
R 6 HOH B 28 328 9 HOH HOH . 
R 6 HOH B 29 329 16 HOH HOH . 
R 6 HOH B 30 330 18 HOH HOH . 
R 6 HOH B 31 331 31 HOH HOH . 
R 6 HOH B 32 332 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA FDE . . . C 2 6.282 6.287 -8.162 1 40.83 ? CHA FDE 201 A 1 
HETATM 2 C C1A FDE . . . C 2 4.873 6.661 -8.219 1 40.33 ? C1A FDE 201 A 1 
HETATM 3 C C2A FDE . . . C 2 3.995 6.783 -7.012 1 43.83 ? C2A FDE 201 A 1 
HETATM 4 C CAA FDE . . . C 2 4.355 6.481 -5.574 1 46.36 ? CAA FDE 201 A 1 
HETATM 5 C CBA FDE . . . C 2 4.704 4.998 -5.431 1 46.61 ? CBA FDE 201 A 1 
HETATM 6 C CGA FDE . . . C 2 3.641 4.173 -4.736 1 47.77 ? CGA FDE 201 A 1 
HETATM 7 O O1A FDE . . . C 2 2.431 4.3 -5.058 1 48.8 ? O1A FDE 201 A 1 
HETATM 8 O O2A FDE . . . C 2 4.033 3.367 -3.852 1 48.65 ? O2A FDE 201 A 1 
HETATM 9 C C3A FDE . . . C 2 2.656 7.186 -7.514 1 43.16 ? C3A FDE 201 A 1 
HETATM 10 C CMA FDE . . . C 2 1.426 7.387 -6.663 1 41.96 ? CMA FDE 201 A 1 
HETATM 11 C C4A FDE . . . C 2 2.799 7.29 -9.007 1 40.08 ? C4A FDE 201 A 1 
HETATM 12 N NA FDE . . . C 2 4.206 7.131 -9.423 1 41.52 ? NA FDE 201 A 1 
HETATM 13 C CHB FDE . . . C 2 1.726 7.733 -9.92 1 40.51 ? CHB FDE 201 A 1 
HETATM 14 C C1B FDE . . . C 2 1.919 7.897 -11.379 1 39.38 ? C1B FDE 201 A 1 
HETATM 15 C C2B FDE . . . C 2 0.875 8.436 -12.122 1 39.57 ? C2B FDE 201 A 1 
HETATM 16 C C3B FDE . . . C 2 1.389 8.48 -13.393 1 40.74 ? C3B FDE 201 A 1 
HETATM 17 C CME FDE . . . C 2 0.51 9.024 -14.487 1 41.45 ? CME FDE 201 A 1 
HETATM 18 C C4B FDE . . . C 2 2.766 7.956 -13.298 1 40.61 ? C4B FDE 201 A 1 
HETATM 19 N NB FDE . . . C 2 3.056 7.595 -12.037 1 40.54 ? NB FDE 201 A 1 
HETATM 20 C CHC FDE . . . C 2 3.691 7.814 -14.434 1 41.6 ? CHC FDE 201 A 1 
HETATM 21 C C1C FDE . . . C 2 5.005 7.165 -14.351 1 42.63 ? C1C FDE 201 A 1 
HETATM 22 C C2C FDE . . . C 2 5.68 6.976 -15.542 1 43.91 ? C2C FDE 201 A 1 
HETATM 23 C C3C FDE . . . C 2 6.819 6.342 -15.13 1 41.37 ? C3C FDE 201 A 1 
HETATM 24 C CMF FDE . . . C 2 7.801 5.992 -16.196 1 43.59 ? CMF FDE 201 A 1 
HETATM 25 C C4C FDE . . . C 2 6.717 6.167 -13.669 1 44.44 ? C4C FDE 201 A 1 
HETATM 26 N NC FDE . . . C 2 5.571 6.687 -13.23 1 41.88 ? NC FDE 201 A 1 
HETATM 27 C CHD FDE . . . C 2 7.739 5.553 -12.801 1 42.57 ? CHD FDE 201 A 1 
HETATM 28 C C1D FDE . . . C 2 7.725 5.568 -11.326 1 44.03 ? C1D FDE 201 A 1 
HETATM 29 C C2D FDE . . . C 2 8.89 5.107 -10.524 1 43.1 ? C2D FDE 201 A 1 
HETATM 30 C CMD FDE . . . C 2 10.205 4.542 -10.982 1 44.58 ? CMD FDE 201 A 1 
HETATM 31 C C3D FDE . . . C 2 8.45 5.335 -9.139 1 44.78 ? C3D FDE 201 A 1 
HETATM 32 C CAD FDE . . . C 2 9.193 5.065 -7.846 1 45.06 ? CAD FDE 201 A 1 
HETATM 33 C CBD FDE . . . C 2 8.527 3.967 -7.02 1 44.88 ? CBD FDE 201 A 1 
HETATM 34 C CGD FDE . . . C 2 8.989 4.019 -5.573 1 47.68 ? CGD FDE 201 A 1 
HETATM 35 O O1D FDE . . . C 2 9.133 2.935 -4.971 1 47.02 ? O1D FDE 201 A 1 
HETATM 36 O O2D FDE . . . C 2 9.222 5.122 -5.018 1 49.65 ? O2D FDE 201 A 1 
HETATM 37 C C4D FDE . . . C 2 7.101 5.922 -9.323 1 43.27 ? C4D FDE 201 A 1 
HETATM 38 N ND FDE . . . C 2 6.684 6.044 -10.6 1 41.23 ? ND FDE 201 A 1 
HETATM 39 FE FE FDE . . . C 2 4.843 6.802 -11.29 1 40.11 ? FE FDE 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#