data_6VDS
#
_model_server_result.job_id            293aZ16BbMEKU0vsfPJLqg 
_model_server_result.datetime_utc      '2024-10-10 10:19:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    6VDS 
#
_exptl.entry_id    6VDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VDS 
_cell.length_a            59.562 
_cell.length_b            67.491 
_cell.length_c            67.951 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 C FE FDE . A FDE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A NE2 HIS 89 A HIS 89 1_555 C FE FDE . A FDE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc3 B NE2 HIS 55 B HIS 55 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 B NE2 HIS 55 B HIS 55 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 B NE2 HIS 89 B HIS 89 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 B NE2 HIS 89 B HIS 89 1_555 K FE FDE . B FDE 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6VDS 
_atom_sites.fract_transf_matrix[1][1]    0.016789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FDE A 1 201 201 FDE FDE . 
D 3 MWJ A 1 202 301 MWJ MWJ . 
E 4 EDO A 1 203 401 EDO EDO . 
F 4 EDO A 1 204 501 EDO EDO . 
G 4 EDO A 1 205 601 EDO EDO . 
H 4 EDO A 1 206 701 EDO EDO . 
I 5 SO4 A 1 207 1 SO4 SO4 . 
J 5 SO4 A 1 208 2 SO4 SO4 . 
K 2 FDE B 1 201 201 FDE FDE . 
L 3 MWJ B 1 202 301 MWJ MWJ . 
M 4 EDO B 1 203 401 EDO EDO . 
N 4 EDO B 1 204 501 EDO EDO . 
O 4 EDO B 1 205 601 EDO EDO . 
P 4 EDO B 1 206 701 EDO EDO . 
Q 6 HOH A 1 301 63 HOH HOH . 
Q 6 HOH A 2 302 88 HOH HOH . 
Q 6 HOH A 3 303 37 HOH HOH . 
Q 6 HOH A 4 304 65 HOH HOH . 
Q 6 HOH A 5 305 85 HOH HOH . 
Q 6 HOH A 6 306 81 HOH HOH . 
Q 6 HOH A 7 307 61 HOH HOH . 
Q 6 HOH A 8 308 47 HOH HOH . 
Q 6 HOH A 9 309 69 HOH HOH . 
Q 6 HOH A 10 310 70 HOH HOH . 
Q 6 HOH A 11 311 38 HOH HOH . 
Q 6 HOH A 12 312 74 HOH HOH . 
Q 6 HOH A 13 313 66 HOH HOH . 
Q 6 HOH A 14 314 21 HOH HOH . 
Q 6 HOH A 15 315 64 HOH HOH . 
Q 6 HOH A 16 316 87 HOH HOH . 
Q 6 HOH A 17 317 56 HOH HOH . 
Q 6 HOH A 18 318 71 HOH HOH . 
Q 6 HOH A 19 319 4 HOH HOH . 
Q 6 HOH A 20 320 17 HOH HOH . 
Q 6 HOH A 21 321 75 HOH HOH . 
Q 6 HOH A 22 322 2 HOH HOH . 
Q 6 HOH A 23 323 32 HOH HOH . 
Q 6 HOH A 24 324 14 HOH HOH . 
Q 6 HOH A 25 325 45 HOH HOH . 
Q 6 HOH A 26 326 1 HOH HOH . 
Q 6 HOH A 27 327 67 HOH HOH . 
Q 6 HOH A 28 328 8 HOH HOH . 
Q 6 HOH A 29 329 73 HOH HOH . 
Q 6 HOH A 30 330 43 HOH HOH . 
Q 6 HOH A 31 331 57 HOH HOH . 
Q 6 HOH A 32 332 58 HOH HOH . 
Q 6 HOH A 33 333 48 HOH HOH . 
Q 6 HOH A 34 334 82 HOH HOH . 
Q 6 HOH A 35 335 39 HOH HOH . 
Q 6 HOH A 36 336 3 HOH HOH . 
Q 6 HOH A 37 337 83 HOH HOH . 
Q 6 HOH A 38 338 50 HOH HOH . 
Q 6 HOH A 39 339 59 HOH HOH . 
Q 6 HOH A 40 340 53 HOH HOH . 
Q 6 HOH A 41 341 13 HOH HOH . 
Q 6 HOH A 42 342 60 HOH HOH . 
Q 6 HOH A 43 343 72 HOH HOH . 
Q 6 HOH A 44 344 68 HOH HOH . 
R 6 HOH B 1 301 27 HOH HOH . 
R 6 HOH B 2 302 91 HOH HOH . 
R 6 HOH B 3 303 55 HOH HOH . 
R 6 HOH B 4 304 22 HOH HOH . 
R 6 HOH B 5 305 62 HOH HOH . 
R 6 HOH B 6 306 26 HOH HOH . 
R 6 HOH B 7 307 84 HOH HOH . 
R 6 HOH B 8 308 19 HOH HOH . 
R 6 HOH B 9 309 35 HOH HOH . 
R 6 HOH B 10 310 77 HOH HOH . 
R 6 HOH B 11 311 78 HOH HOH . 
R 6 HOH B 12 312 76 HOH HOH . 
R 6 HOH B 13 313 41 HOH HOH . 
R 6 HOH B 14 314 12 HOH HOH . 
R 6 HOH B 15 315 25 HOH HOH . 
R 6 HOH B 16 316 5 HOH HOH . 
R 6 HOH B 17 317 20 HOH HOH . 
R 6 HOH B 18 318 36 HOH HOH . 
R 6 HOH B 19 319 40 HOH HOH . 
R 6 HOH B 20 320 90 HOH HOH . 
R 6 HOH B 21 321 89 HOH HOH . 
R 6 HOH B 22 322 24 HOH HOH . 
R 6 HOH B 23 323 80 HOH HOH . 
R 6 HOH B 24 324 15 HOH HOH . 
R 6 HOH B 25 325 7 HOH HOH . 
R 6 HOH B 26 326 79 HOH HOH . 
R 6 HOH B 27 327 86 HOH HOH . 
R 6 HOH B 28 328 9 HOH HOH . 
R 6 HOH B 29 329 16 HOH HOH . 
R 6 HOH B 30 330 18 HOH HOH . 
R 6 HOH B 31 331 31 HOH HOH . 
R 6 HOH B 32 332 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 12.178 16.125 -30.712 1 31.18 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . G 4 12.323 16.917 -29.563 1 31.89 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . G 4 10.759 15.783 -30.992 1 30.18 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . G 4 10.158 14.896 -30.05 1 30.05 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#