data_6VDU
#
_model_server_result.job_id            3IKukAnQvUUH3Kpq5sXanA 
_model_server_result.datetime_utc      '2025-01-07 13:30:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vdu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    6VDU 
#
_exptl.entry_id    6VDU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VDU 
_cell.length_a            59.174 
_cell.length_b            67.901 
_cell.length_c            67.905 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 320 n n 
C1 C2 PEG sing 321 n n 
C1 H11 PEG sing 322 n n 
C1 H12 PEG sing 323 n n 
O1 HO1 PEG sing 324 n n 
C2 O2 PEG sing 325 n n 
C2 H21 PEG sing 326 n n 
C2 H22 PEG sing 327 n n 
O2 C3 PEG sing 328 n n 
C3 C4 PEG sing 329 n n 
C3 H31 PEG sing 330 n n 
C3 H32 PEG sing 331 n n 
C4 O4 PEG sing 332 n n 
C4 H41 PEG sing 333 n n 
C4 H42 PEG sing 334 n n 
O4 HO4 PEG sing 335 n n 
#
_atom_sites.entry_id                     6VDU 
_atom_sites.fract_transf_matrix[1][1]    0.016899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FDE A 1 201 201 FDE FDE . 
D 3 T6C A 1 202 301 T6C T6C . 
E 4 EDO A 1 203 401 EDO EDO . 
F 4 EDO A 1 204 501 EDO EDO . 
G 5 PEG A 1 205 601 PEG PEG . 
H 6 SO4 A 1 206 1 SO4 SO4 . 
I 6 SO4 A 1 207 2 SO4 SO4 . 
J 2 FDE B 1 201 201 FDE FDE . 
K 3 T6C B 1 202 301 T6C T6C . 
L 4 EDO B 1 203 401 EDO EDO . 
M 4 EDO B 1 204 501 EDO EDO . 
N 7 HOH A 1 301 65 HOH HOH . 
N 7 HOH A 2 302 4 HOH HOH . 
N 7 HOH A 3 303 88 HOH HOH . 
N 7 HOH A 4 304 76 HOH HOH . 
N 7 HOH A 5 305 67 HOH HOH . 
N 7 HOH A 6 306 66 HOH HOH . 
N 7 HOH A 7 307 40 HOH HOH . 
N 7 HOH A 8 308 62 HOH HOH . 
N 7 HOH A 9 309 60 HOH HOH . 
N 7 HOH A 10 310 41 HOH HOH . 
N 7 HOH A 11 311 54 HOH HOH . 
N 7 HOH A 12 312 27 HOH HOH . 
N 7 HOH A 13 313 1 HOH HOH . 
N 7 HOH A 14 314 10 HOH HOH . 
N 7 HOH A 15 315 33 HOH HOH . 
N 7 HOH A 16 316 22 HOH HOH . 
N 7 HOH A 17 317 86 HOH HOH . 
N 7 HOH A 18 318 36 HOH HOH . 
N 7 HOH A 19 319 64 HOH HOH . 
N 7 HOH A 20 320 57 HOH HOH . 
N 7 HOH A 21 321 50 HOH HOH . 
N 7 HOH A 22 322 43 HOH HOH . 
N 7 HOH A 23 323 19 HOH HOH . 
N 7 HOH A 24 324 89 HOH HOH . 
N 7 HOH A 25 325 26 HOH HOH . 
N 7 HOH A 26 326 52 HOH HOH . 
N 7 HOH A 27 327 30 HOH HOH . 
N 7 HOH A 28 328 55 HOH HOH . 
N 7 HOH A 29 329 23 HOH HOH . 
N 7 HOH A 30 330 42 HOH HOH . 
N 7 HOH A 31 331 15 HOH HOH . 
N 7 HOH A 32 332 28 HOH HOH . 
N 7 HOH A 33 333 25 HOH HOH . 
N 7 HOH A 34 334 16 HOH HOH . 
N 7 HOH A 35 335 38 HOH HOH . 
N 7 HOH A 36 336 68 HOH HOH . 
N 7 HOH A 37 337 75 HOH HOH . 
N 7 HOH A 38 338 74 HOH HOH . 
N 7 HOH A 39 339 71 HOH HOH . 
N 7 HOH A 40 340 2 HOH HOH . 
N 7 HOH A 41 341 13 HOH HOH . 
N 7 HOH A 42 342 72 HOH HOH . 
N 7 HOH A 43 343 44 HOH HOH . 
N 7 HOH A 44 344 20 HOH HOH . 
N 7 HOH A 45 345 69 HOH HOH . 
N 7 HOH A 46 346 87 HOH HOH . 
N 7 HOH A 47 347 32 HOH HOH . 
O 7 HOH B 1 301 6 HOH HOH . 
O 7 HOH B 2 302 78 HOH HOH . 
O 7 HOH B 3 303 91 HOH HOH . 
O 7 HOH B 4 304 85 HOH HOH . 
O 7 HOH B 5 305 34 HOH HOH . 
O 7 HOH B 6 306 8 HOH HOH . 
O 7 HOH B 7 307 81 HOH HOH . 
O 7 HOH B 8 308 12 HOH HOH . 
O 7 HOH B 9 309 3 HOH HOH . 
O 7 HOH B 10 310 14 HOH HOH . 
O 7 HOH B 11 311 7 HOH HOH . 
O 7 HOH B 12 312 29 HOH HOH . 
O 7 HOH B 13 313 70 HOH HOH . 
O 7 HOH B 14 314 63 HOH HOH . 
O 7 HOH B 15 315 35 HOH HOH . 
O 7 HOH B 16 316 47 HOH HOH . 
O 7 HOH B 17 317 92 HOH HOH . 
O 7 HOH B 18 318 61 HOH HOH . 
O 7 HOH B 19 319 48 HOH HOH . 
O 7 HOH B 20 320 39 HOH HOH . 
O 7 HOH B 21 321 83 HOH HOH . 
O 7 HOH B 22 322 5 HOH HOH . 
O 7 HOH B 23 323 46 HOH HOH . 
O 7 HOH B 24 324 82 HOH HOH . 
O 7 HOH B 25 325 84 HOH HOH . 
O 7 HOH B 26 326 77 HOH HOH . 
O 7 HOH B 27 327 24 HOH HOH . 
O 7 HOH B 28 328 37 HOH HOH . 
O 7 HOH B 29 329 21 HOH HOH . 
O 7 HOH B 30 330 59 HOH HOH . 
O 7 HOH B 31 331 49 HOH HOH . 
O 7 HOH B 32 332 58 HOH HOH . 
O 7 HOH B 33 333 80 HOH HOH . 
O 7 HOH B 34 334 56 HOH HOH . 
O 7 HOH B 35 335 90 HOH HOH . 
O 7 HOH B 36 336 51 HOH HOH . 
O 7 HOH B 37 337 79 HOH HOH . 
O 7 HOH B 38 338 17 HOH HOH . 
O 7 HOH B 39 339 18 HOH HOH . 
O 7 HOH B 40 340 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . G 5 -2.388 -11.24 -2.083 1 43.91 ? C1 PEG 205 A 1 
HETATM 2 O O1 PEG . . . G 5 -3.689 -10.683 -1.792 1 35.02 ? O1 PEG 205 A 1 
HETATM 3 C C2 PEG . . . G 5 -1.487 -11.381 -0.871 1 45.2 ? C2 PEG 205 A 1 
HETATM 4 O O2 PEG . . . G 5 -2.205 -11.883 0.263 1 46.98 ? O2 PEG 205 A 1 
HETATM 5 C C3 PEG . . . G 5 -1.649 -13.057 0.854 1 37.27 ? C3 PEG 205 A 1 
HETATM 6 C C4 PEG . . . G 5 -2.754 -13.896 1.466 1 37.44 ? C4 PEG 205 A 1 
HETATM 7 O O4 PEG . . . G 5 -3.815 -13.119 2.039 1 31.51 ? O4 PEG 205 A 1 
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_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#