data_6VE0 # _model_server_result.job_id KBGZTCpMZln-kaNA2ep_4w _model_server_result.datetime_utc '2024-11-27 03:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ve0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6VE0 # _exptl.entry_id 6VE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VE0 _cell.length_a 59.453 _cell.length_b 59.453 _cell.length_c 159.965 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 317 A CYS 317 1_555 B CAC HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc1 A NE2 HIS 274 A HIS 274 1_555 B FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc2 A NE2 HIS 313 A HIS 313 1_555 B FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 6VE0 _atom_sites.fract_transf_matrix[1][1] 0.01682 _atom_sites.fract_transf_matrix[1][2] 0.009711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -27.463 6.396 17.342 1 111.14 ? FE HEC 401 A 1 HETATM 2 C CHA HEC . . . B 2 -25.467 3.55 17.562 1 108.76 ? CHA HEC 401 A 1 HETATM 3 C CHB HEC . . . B 2 -25.254 7.78 15.222 1 102.65 ? CHB HEC 401 A 1 HETATM 4 C CHC HEC . . . B 2 -28.917 9.544 17.854 1 101.38 ? CHC HEC 401 A 1 HETATM 5 C CHD HEC . . . B 2 -29.74 5.048 19.395 1 105.03 ? CHD HEC 401 A 1 HETATM 6 N NA HEC . . . B 2 -25.671 5.783 16.579 1 112.7 ? NA HEC 401 A 1 HETATM 7 C C1A HEC . . . B 2 -25.056 4.555 16.718 1 109.17 ? C1A HEC 401 A 1 HETATM 8 C C2A HEC . . . B 2 -23.918 4.523 15.824 1 114.95 ? C2A HEC 401 A 1 HETATM 9 C C3A HEC . . . B 2 -23.864 5.692 15.183 1 106.57 ? C3A HEC 401 A 1 HETATM 10 C C4A HEC . . . B 2 -24.963 6.507 15.645 1 106.44 ? C4A HEC 401 A 1 HETATM 11 C CMA HEC . . . B 2 -22.816 6.118 14.134 1 117.69 ? CMA HEC 401 A 1 HETATM 12 C CAA HEC . . . B 2 -22.944 3.342 15.64 1 127.26 ? CAA HEC 401 A 1 HETATM 13 C CBA HEC . . . B 2 -23.245 2.692 14.291 1 132.18 ? CBA HEC 401 A 1 HETATM 14 C CGA HEC . . . B 2 -22.342 1.511 14.105 1 136.82 ? CGA HEC 401 A 1 HETATM 15 O O1A HEC . . . B 2 -22.152 1.072 12.941 1 129.75 ? O1A HEC 401 A 1 HETATM 16 O O2A HEC . . . B 2 -21.815 1.029 15.137 1 137.81 ? O2A HEC 401 A 1 HETATM 17 N NB HEC . . . B 2 -27.148 8.308 16.706 1 102.01 ? NB HEC 401 A 1 HETATM 18 C C1B HEC . . . B 2 -26.189 8.622 15.769 1 101.48 ? C1B HEC 401 A 1 HETATM 19 C C2B HEC . . . B 2 -26.316 10.014 15.43 1 101.35 ? C2B HEC 401 A 1 HETATM 20 C C3B HEC . . . B 2 -27.32 10.526 16.149 1 99.09 ? C3B HEC 401 A 1 HETATM 21 C C4B HEC . . . B 2 -27.868 9.457 16.967 1 101.22 ? C4B HEC 401 A 1 HETATM 22 C CMB HEC . . . B 2 -25.398 10.715 14.406 1 95.52 ? CMB HEC 401 A 1 HETATM 23 C CAB HEC . . . B 2 -27.819 11.989 16.118 1 96.49 ? CAB HEC 401 A 1 HETATM 24 C CBB HEC . . . B 2 -28.422 12.313 14.734 1 110.62 ? CBB HEC 401 A 1 HETATM 25 N NC HEC . . . B 2 -29.036 7.165 18.38 1 102.94 ? NC HEC 401 A 1 HETATM 26 C C1C HEC . . . B 2 -29.456 8.471 18.526 1 102.2 ? C1C HEC 401 A 1 HETATM 27 C C2C HEC . . . B 2 -30.668 8.473 19.327 1 102.69 ? C2C HEC 401 A 1 HETATM 28 C C3C HEC . . . B 2 -30.731 7.273 19.905 1 104.04 ? C3C HEC 401 A 1 HETATM 29 C C4C HEC . . . B 2 -29.812 6.403 19.219 1 104.37 ? C4C HEC 401 A 1 HETATM 30 C CMC HEC . . . B 2 -31.286 9.746 19.945 1 102.17 ? CMC HEC 401 A 1 HETATM 31 C CAC HEC . . . B 2 -31.775 6.765 20.917 1 111.48 ? CAC HEC 401 A 1 HETATM 32 C CBC HEC . . . B 2 -32.971 6.204 20.122 1 117.23 ? CBC HEC 401 A 1 HETATM 33 N ND HEC . . . B 2 -27.55 4.604 18.349 1 114.48 ? ND HEC 401 A 1 HETATM 34 C C1D HEC . . . B 2 -28.673 4.249 19.085 1 105.79 ? C1D HEC 401 A 1 HETATM 35 C C2D HEC . . . B 2 -28.564 2.874 19.489 1 107.8 ? C2D HEC 401 A 1 HETATM 36 C C3D HEC . . . B 2 -27.226 2.392 18.919 1 117.89 ? C3D HEC 401 A 1 HETATM 37 C C4D HEC . . . B 2 -26.669 3.534 18.23 1 115.14 ? C4D HEC 401 A 1 HETATM 38 C CMD HEC . . . B 2 -29.594 2.084 20.318 1 123.05 ? CMD HEC 401 A 1 HETATM 39 C CAD HEC . . . B 2 -26.598 0.99 19.053 1 121.52 ? CAD HEC 401 A 1 HETATM 40 C CBD HEC . . . B 2 -25.688 0.96 20.277 1 128.56 ? CBD HEC 401 A 1 HETATM 41 C CGD HEC . . . B 2 -25.105 -0.416 20.45 1 134.02 ? CGD HEC 401 A 1 HETATM 42 O O1D HEC . . . B 2 -25.472 -1.327 19.664 1 141.34 ? O1D HEC 401 A 1 HETATM 43 O O2D HEC . . . B 2 -24.274 -0.6 21.376 1 134.49 ? O2D HEC 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #