data_6VEF # _model_server_result.job_id 2chvQKyeZTxqMQidta3YnA _model_server_result.datetime_utc '2025-03-06 20:17:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 6VEF # _exptl.entry_id 6VEF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 131.064 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXALOACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VEF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C4 H3 O5 -1' _chem_comp.formula_weight 131.064 _chem_comp.id OAA _chem_comp.mon_nstd_flag . _chem_comp.name 'OXALOACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 OAA doub 274 n n O2 C1 OAA sing 275 n n O4 C4 OAA doub 276 n n O5 C4 OAA sing 277 n n O5 HO5 OAA sing 278 n n O3 C3 OAA doub 279 n n C1 C2 OAA sing 280 n n C2 C3 OAA sing 281 n n C2 H21 OAA sing 282 n n C2 H22 OAA sing 283 n n C3 C4 OAA sing 284 n n # _atom_sites.entry_id 6VEF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 1001 934 AMP AMP . D 3 OAA A 1 1002 935 OAA OAA . E 3 OAA B 1 1001 935 OAA OAA . F 2 AMP B 1 1002 934 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OAA . . . D 3 74.317 81.611 87.491 1 36.91 ? O1 OAA 1002 A 1 HETATM 2 O O2 OAA . . . D 3 72.684 80.104 87.994 1 36.91 ? O2 OAA 1002 A 1 HETATM 3 O O4 OAA . . . D 3 73.208 81.279 92.558 1 36.91 ? O4 OAA 1002 A 1 HETATM 4 O O5 OAA . . . D 3 73.354 79.015 92.726 1 36.91 ? O5 OAA 1002 A 1 HETATM 5 O O3 OAA . . . D 3 74.472 78.992 90.069 1 36.91 ? O3 OAA 1002 A 1 HETATM 6 C C1 OAA . . . D 3 73.562 80.993 88.355 1 36.91 ? C1 OAA 1002 A 1 HETATM 7 C C2 OAA . . . D 3 73.71 81.31 89.81 1 36.91 ? C2 OAA 1002 A 1 HETATM 8 C C3 OAA . . . D 3 73.924 80.051 90.599 1 36.91 ? C3 OAA 1002 A 1 HETATM 9 C C4 OAA . . . D 3 73.477 80.114 92.035 1 36.91 ? C4 OAA 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #