data_6VEJ # _model_server_result.job_id jBWDW2HDPNPQkX691im5rw _model_server_result.datetime_utc '2024-12-22 01:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 6VEJ # _exptl.entry_id 6VEJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-ALPHA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VEJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D SG CYS 1 P CYS 1 1_555 J C41 E2V . P E2V 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale2 D N CYS 1 P CYS 1 1_555 K C1 PLM . P PLM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale3 E SG CYS 1 Q CYS 1 1_555 L C41 E2V . Q E2V 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale4 E N CYS 1 Q CYS 1 1_555 M C1 PLM . Q PLM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale5 F SG CYS 1 R CYS 1 1_555 N C41 E2V . R E2V 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale6 F N CYS 1 R CYS 1 1_555 O C1 PLM . R PLM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMU _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-ALPHA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMU sing 307 n n C1B O1B LMU sing 308 n n C1B O5B LMU sing 309 n n C1B H1B LMU sing 310 n n C2B C3B LMU sing 311 n n C2B O2B LMU sing 312 n n C2B H2B LMU sing 313 n n C3B C4B LMU sing 314 n n C3B O3B LMU sing 315 n n C3B H3B LMU sing 316 n n C4B C5B LMU sing 317 n n C4B O4' LMU sing 318 n n C4B H4B LMU sing 319 n n C5B C6B LMU sing 320 n n C5B O5B LMU sing 321 n n C5B H5B LMU sing 322 n n C6B O6B LMU sing 323 n n C6B "H6'2" LMU sing 324 n n C6B "H6'1" LMU sing 325 n n O1B C4' LMU sing 326 n n O2B H2O1 LMU sing 327 n n O3B H3O1 LMU sing 328 n n O4' H4O1 LMU sing 329 n n O6B H6B LMU sing 330 n n C1' C2' LMU sing 331 n n C1' O1' LMU sing 332 n n C1' O5' LMU sing 333 n n C1' H1' LMU sing 334 n n C2' C3' LMU sing 335 n n C2' O2' LMU sing 336 n n C2' H2' LMU sing 337 n n C3' C4' LMU sing 338 n n C3' O3' LMU sing 339 n n C3' H3' LMU sing 340 n n C4' C5' LMU sing 341 n n C4' H4' LMU sing 342 n n C5' C6' LMU sing 343 n n C5' O5' LMU sing 344 n n C5' H5' LMU sing 345 n n C6' O6' LMU sing 346 n n C6' H6D LMU sing 347 n n C6' H6E LMU sing 348 n n O1' C1 LMU sing 349 n n O2' H2O2 LMU sing 350 n n O3' H3O2 LMU sing 351 n n O6' H6' LMU sing 352 n n C1 C2 LMU sing 353 n n C1 H12 LMU sing 354 n n C1 H11 LMU sing 355 n n C2 C3 LMU sing 356 n n C2 H22 LMU sing 357 n n C2 H21 LMU sing 358 n n C3 C4 LMU sing 359 n n C3 H32 LMU sing 360 n n C3 H31 LMU sing 361 n n C4 C5 LMU sing 362 n n C4 H42 LMU sing 363 n n C4 H41 LMU sing 364 n n C5 C6 LMU sing 365 n n C5 H52 LMU sing 366 n n C5 H51 LMU sing 367 n n C6 C7 LMU sing 368 n n C6 H62 LMU sing 369 n n C6 H61 LMU sing 370 n n C7 C8 LMU sing 371 n n C7 H72 LMU sing 372 n n C7 H71 LMU sing 373 n n C8 C9 LMU sing 374 n n C8 H82 LMU sing 375 n n C8 H81 LMU sing 376 n n C9 C10 LMU sing 377 n n C9 H92 LMU sing 378 n n C9 H91 LMU sing 379 n n C10 C11 LMU sing 380 n n C10 H102 LMU sing 381 n n C10 H101 LMU sing 382 n n C11 C12 LMU sing 383 n n C11 H112 LMU sing 384 n n C11 H111 LMU sing 385 n n C12 H123 LMU sing 386 n n C12 H122 LMU sing 387 n n C12 H121 LMU sing 388 n n # _atom_sites.entry_id 6VEJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 LMU A 1 1101 1050 LMU DMJ . H 3 LMU B 1 1101 1050 LMU DMJ . I 3 LMU C 1 1101 1050 LMU DMJ . J 4 E2V P 1 701 1034 E2V BPL . K 5 PLM P 1 702 1035 PLM CBG . L 4 E2V Q 1 701 1034 E2V BPL . M 5 PLM Q 1 702 1035 PLM CBG . N 4 E2V R 1 701 1034 E2V BPL . O 5 PLM R 1 702 1035 PLM CBG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMU . . . G 3 98.485 95.141 112.24 1 138.71 ? C1B LMU 1101 A 1 HETATM 2 C C2B LMU . . . G 3 98.298 93.858 111.459 1 138.71 ? C2B LMU 1101 A 1 HETATM 3 C C3B LMU . . . G 3 97.423 92.894 112.192 1 138.71 ? C3B LMU 1101 A 1 HETATM 4 C C4B LMU . . . G 3 97.96 92.598 113.557 1 138.71 ? C4B LMU 1101 A 1 HETATM 5 C C5B LMU . . . G 3 98.197 93.866 114.362 1 138.71 ? C5B LMU 1101 A 1 HETATM 6 C C6B LMU . . . G 3 98.911 93.5 115.624 1 138.71 ? C6B LMU 1101 A 1 HETATM 7 O O1B LMU . . . G 3 97.262 95.774 112.355 1 138.71 ? O1B LMU 1101 A 1 HETATM 8 O O2B LMU . . . G 3 97.689 94.156 110.19 1 138.71 ? O2B LMU 1101 A 1 HETATM 9 O O3B LMU . . . G 3 97.35 91.664 111.437 1 138.71 ? O3B LMU 1101 A 1 HETATM 10 O O4' LMU . . . G 3 97.021 91.761 114.255 1 138.71 ? O4' LMU 1101 A 1 HETATM 11 O O5B LMU . . . G 3 99.013 94.865 113.622 1 138.71 ? O5B LMU 1101 A 1 HETATM 12 O O6B LMU . . . G 3 100.276 93.292 115.32 1 138.71 ? O6B LMU 1101 A 1 HETATM 13 C C1' LMU . . . G 3 98.278 99.68 111.144 1 138.71 ? C1' LMU 1101 A 1 HETATM 14 C C2' LMU . . . G 3 98.24 99.346 112.593 1 138.71 ? C2' LMU 1101 A 1 HETATM 15 C C3' LMU . . . G 3 98.316 97.901 112.824 1 138.71 ? C3' LMU 1101 A 1 HETATM 16 C C4' LMU . . . G 3 97.319 97.172 111.998 1 138.71 ? C4' LMU 1101 A 1 HETATM 17 C C5' LMU . . . G 3 97.599 97.336 110.48 1 138.71 ? C5' LMU 1101 A 1 HETATM 18 C C6' LMU . . . G 3 96.4 97.617 109.8 1 138.71 ? C6' LMU 1101 A 1 HETATM 19 O O1' LMU . . . G 3 99.264 100.672 110.94 1 138.71 ? O1' LMU 1101 A 1 HETATM 20 O O2' LMU . . . G 3 99.374 99.997 113.254 1 138.71 ? O2' LMU 1101 A 1 HETATM 21 O O3' LMU . . . G 3 98.056 97.634 114.256 1 138.71 ? O3' LMU 1101 A 1 HETATM 22 O O5' LMU . . . G 3 98.593 98.509 110.307 1 138.71 ? O5' LMU 1101 A 1 HETATM 23 O O6' LMU . . . G 3 95.948 96.453 109.195 1 138.71 ? O6' LMU 1101 A 1 HETATM 24 C C1 LMU . . . G 3 99.122 101.391 109.707 1 138.71 ? C1 LMU 1101 A 1 HETATM 25 C C2 LMU . . . G 3 99.551 102.893 109.951 1 138.71 ? C2 LMU 1101 A 1 HETATM 26 C C3 LMU . . . G 3 98.506 103.901 109.392 1 138.71 ? C3 LMU 1101 A 1 HETATM 27 C C4 LMU . . . G 3 98.312 105.158 110.329 1 138.71 ? C4 LMU 1101 A 1 HETATM 28 C C5 LMU . . . G 3 96.811 105.443 110.613 1 138.71 ? C5 LMU 1101 A 1 HETATM 29 C C6 LMU . . . G 3 96.087 106.165 109.401 1 138.71 ? C6 LMU 1101 A 1 HETATM 30 C C7 LMU . . . G 3 97.015 107.197 108.673 1 138.71 ? C7 LMU 1101 A 1 HETATM 31 C C8 LMU . . . G 3 96.239 108.052 107.655 1 138.71 ? C8 LMU 1101 A 1 HETATM 32 C C9 LMU . . . G 3 96.675 109.558 107.673 1 138.71 ? C9 LMU 1101 A 1 HETATM 33 C C10 LMU . . . G 3 97.133 110.031 109.06 1 138.71 ? C10 LMU 1101 A 1 HETATM 34 C C11 LMU . . . G 3 97.283 111.552 109.126 1 138.71 ? C11 LMU 1101 A 1 HETATM 35 C C12 LMU . . . G 3 95.974 112.285 108.759 1 138.71 ? C12 LMU 1101 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 35 #