data_6VFY # _model_server_result.job_id BB7fu2YaeNFkzfj7TopeHw _model_server_result.datetime_utc '2024-11-24 21:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6VFY # _exptl.entry_id 6VFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.57 _cell.angle_gamma 90 _cell.entry_id 6VFY _cell.length_a 67.156 _cell.length_b 135.331 _cell.length_c 70.126 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6VFY _atom_sites.fract_transf_matrix[1][1] 0.014891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002779 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA D 1 401 401 COA COA . E 2 COA E 1 401 401 COA COA . F 2 COA F 1 401 401 COA COA . G 3 PO4 F 1 402 1 PO4 PO4 . H 4 HOH D 1 501 1 HOH HOH . H 4 HOH D 2 502 2 HOH HOH . H 4 HOH D 3 503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 2 3.078 20.762 11.146 1 61.2 ? N1A COA 401 D 1 HETATM 2 C C2A COA . . . D 2 3.725 20.342 10.032 1 54.46 ? C2A COA 401 D 1 HETATM 3 N N3A COA . . . D 2 3.152 19.431 9.21 1 61.35 ? N3A COA 401 D 1 HETATM 4 C C4A COA . . . D 2 1.929 18.943 9.504 1 58.05 ? C4A COA 401 D 1 HETATM 5 C C5A COA . . . D 2 1.295 19.354 10.602 1 62.16 ? C5A COA 401 D 1 HETATM 6 C C6A COA . . . D 2 1.883 20.283 11.436 1 66.8 ? C6A COA 401 D 1 HETATM 7 N N6A COA . . . D 2 1.347 20.861 12.689 1 65.73 ? N6A COA 401 D 1 HETATM 8 N N7A COA . . . D 2 0.11 18.717 10.666 1 65.2 ? N7A COA 401 D 1 HETATM 9 C C8A COA . . . D 2 0.019 17.917 9.604 1 71.22 ? C8A COA 401 D 1 HETATM 10 N N9A COA . . . D 2 1.139 18.039 8.884 1 67.12 ? N9A COA 401 D 1 HETATM 11 C C1B COA . . . D 2 1.44 17.373 7.669 1 70.27 ? C1B COA 401 D 1 HETATM 12 C C2B COA . . . D 2 1.836 16.104 7.845 1 60.77 ? C2B COA 401 D 1 HETATM 13 O O2B COA . . . D 2 3.296 16.016 8.083 1 65.46 ? O2B COA 401 D 1 HETATM 14 C C3B COA . . . D 2 1.401 15.398 6.532 1 62.95 ? C3B COA 401 D 1 HETATM 15 O O3B COA . . . D 2 2.241 15.496 5.503 1 70.17 ? O3B COA 401 D 1 HETATM 16 P P3B COA . . . D 2 3.611 14.624 5.367 1 71.75 ? P3B COA 401 D 1 HETATM 17 O O7A COA . . . D 2 4.463 15.217 4.274 1 65.68 ? O7A COA 401 D 1 HETATM 18 O O8A COA . . . D 2 4.357 14.571 6.666 1 55.08 ? O8A COA 401 D 1 HETATM 19 O O9A COA . . . D 2 3.243 13.211 4.991 1 98.42 ? O9A COA 401 D 1 HETATM 20 C C4B COA . . . D 2 0.067 16.166 6.106 1 79.22 ? C4B COA 401 D 1 HETATM 21 O O4B COA . . . D 2 0.036 17.275 6.813 1 74.8 ? O4B COA 401 D 1 HETATM 22 C C5B COA . . . D 2 -1.173 15.309 6.388 1 69.4 ? C5B COA 401 D 1 HETATM 23 O O5B COA . . . D 2 -0.921 14.674 7.624 1 71.71 ? O5B COA 401 D 1 HETATM 24 P P1A COA . . . D 2 -2.112 14.108 8.644 1 87.25 ? P1A COA 401 D 1 HETATM 25 O O1A COA . . . D 2 -2.168 12.601 8.491 1 92.89 ? O1A COA 401 D 1 HETATM 26 O O2A COA . . . D 2 -1.7 14.44 10.053 1 75.57 ? O2A COA 401 D 1 HETATM 27 O O3A COA . . . D 2 -3.643 14.687 8.351 1 68.05 ? O3A COA 401 D 1 HETATM 28 P P2A COA . . . D 2 -4.402 15.758 9.392 1 83.83 ? P2A COA 401 D 1 HETATM 29 O O4A COA . . . D 2 -3.965 15.507 10.824 1 60.29 ? O4A COA 401 D 1 HETATM 30 O O5A COA . . . D 2 -5.904 15.55 9.282 1 93.25 ? O5A COA 401 D 1 HETATM 31 O O6A COA . . . D 2 -4.062 17.315 8.942 1 96.3 ? O6A COA 401 D 1 HETATM 32 C CBP COA . . . D 2 -4.141 19.656 9.573 1 67.75 ? CBP COA 401 D 1 HETATM 33 C CCP COA . . . D 2 -3.577 18.245 9.876 1 85.66 ? CCP COA 401 D 1 HETATM 34 C CDP COA . . . D 2 -3.043 20.688 9.912 1 70.26 ? CDP COA 401 D 1 HETATM 35 C CEP COA . . . D 2 -4.496 19.729 8.083 1 60.74 ? CEP COA 401 D 1 HETATM 36 C CAP COA . . . D 2 -5.396 19.985 10.472 1 77.68 ? CAP COA 401 D 1 HETATM 37 O OAP COA . . . D 2 -4.952 20.122 11.776 1 85.13 ? OAP COA 401 D 1 HETATM 38 C C9P COA . . . D 2 -6.046 21.268 10.032 1 73.94 ? C9P COA 401 D 1 HETATM 39 O O9P COA . . . D 2 -6.964 21.224 9.306 1 92.41 ? O9P COA 401 D 1 HETATM 40 N N8P COA . . . D 2 -5.575 22.579 10.493 1 68.93 ? N8P COA 401 D 1 HETATM 41 C C7P COA . . . D 2 -6.212 23.797 10.024 1 86.65 ? C7P COA 401 D 1 HETATM 42 C C6P COA . . . D 2 -6.168 24.965 11.107 1 78.13 ? C6P COA 401 D 1 HETATM 43 C C5P COA . . . D 2 -6.421 26.372 10.456 1 99.57 ? C5P COA 401 D 1 HETATM 44 O O5P COA . . . D 2 -7.176 27.122 10.959 1 114.32 ? O5P COA 401 D 1 HETATM 45 N N4P COA . . . D 2 -5.682 26.752 9.223 1 86.82 ? N4P COA 401 D 1 HETATM 46 C C3P COA . . . D 2 -5.832 28.048 8.53 1 62.77 ? C3P COA 401 D 1 HETATM 47 C C2P COA . . . D 2 -7.325 28.347 8.136 1 81.92 ? C2P COA 401 D 1 HETATM 48 S S1P COA . . . D 2 -8.055 26.908 7.273 1 125.44 ? S1P COA 401 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #