data_6VFY # _model_server_result.job_id kpB9V2aNGSVZeDmurlqNxw _model_server_result.datetime_utc '2024-11-28 15:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6VFY # _exptl.entry_id 6VFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.57 _cell.angle_gamma 90 _cell.entry_id 6VFY _cell.length_a 67.156 _cell.length_b 135.331 _cell.length_c 70.126 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6VFY _atom_sites.fract_transf_matrix[1][1] 0.014891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002779 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 COA D 1 401 401 COA COA . E 2 COA E 1 401 401 COA COA . F 2 COA F 1 401 401 COA COA . G 3 PO4 F 1 402 1 PO4 PO4 . H 4 HOH D 1 501 1 HOH HOH . H 4 HOH D 2 502 2 HOH HOH . H 4 HOH D 3 503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 2 -29.677 56.569 34.353 1 79.46 ? N1A COA 401 F 1 HETATM 2 C C2A COA . . . F 2 -30.017 57.838 34.043 1 85.64 ? C2A COA 401 F 1 HETATM 3 N N3A COA . . . F 2 -29.239 58.864 34.456 1 88.1 ? N3A COA 401 F 1 HETATM 4 C C4A COA . . . F 2 -28.122 58.64 35.181 1 97.82 ? C4A COA 401 F 1 HETATM 5 C C5A COA . . . F 2 -27.792 57.385 35.484 1 94.28 ? C5A COA 401 F 1 HETATM 6 C C6A COA . . . F 2 -28.589 56.336 35.059 1 89.34 ? C6A COA 401 F 1 HETATM 7 N N6A COA . . . F 2 -28.405 54.887 35.286 1 83.61 ? N6A COA 401 F 1 HETATM 8 N N7A COA . . . F 2 -26.651 57.416 36.203 1 86.37 ? N7A COA 401 F 1 HETATM 9 C C8A COA . . . F 2 -26.283 58.693 36.337 1 94.29 ? C8A COA 401 F 1 HETATM 10 N N9A COA . . . F 2 -27.185 59.469 35.719 1 98.64 ? N9A COA 401 F 1 HETATM 11 C C1B COA . . . F 2 -27.146 60.896 35.625 1 92.86 ? C1B COA 401 F 1 HETATM 12 C C2B COA . . . F 2 -28.31 61.517 35.85 1 100.41 ? C2B COA 401 F 1 HETATM 13 O O2B COA . . . F 2 -28.108 62.926 35.442 1 118.24 ? O2B COA 401 F 1 HETATM 14 C C3B COA . . . F 2 -28.42 61.413 37.383 1 84 ? C3B COA 401 F 1 HETATM 15 O O3B COA . . . F 2 -29.438 62.091 37.946 1 89.14 ? O3B COA 401 F 1 HETATM 16 P P3B COA . . . F 2 -29.785 63.687 37.806 1 97.6 ? P3B COA 401 F 1 HETATM 17 O O7A COA . . . F 2 -31.118 63.859 37.122 1 107.15 ? O7A COA 401 F 1 HETATM 18 O O8A COA . . . F 2 -28.745 64.452 37.049 1 84.37 ? O8A COA 401 F 1 HETATM 19 O O9A COA . . . F 2 -29.889 64.267 39.191 1 107.51 ? O9A COA 401 F 1 HETATM 20 C C4B COA . . . F 2 -26.956 61.879 37.815 1 100.02 ? C4B COA 401 F 1 HETATM 21 O O4B COA . . . F 2 -26.187 61.554 36.795 1 93.79 ? O4B COA 401 F 1 HETATM 22 C C5B COA . . . F 2 -26.456 61.164 39.08 1 115.83 ? C5B COA 401 F 1 HETATM 23 O O5B COA . . . F 2 -25.054 60.889 39.019 1 101.11 ? O5B COA 401 F 1 HETATM 24 P P1A COA . . . F 2 -23.909 62.117 38.99 1 95.4 ? P1A COA 401 F 1 HETATM 25 O O1A COA . . . F 2 -24.148 63.08 37.845 1 106.62 ? O1A COA 401 F 1 HETATM 26 O O2A COA . . . F 2 -23.914 62.876 40.289 1 114.56 ? O2A COA 401 F 1 HETATM 27 O O3A COA . . . F 2 -22.389 61.499 38.741 1 108.44 ? O3A COA 401 F 1 HETATM 28 P P2A COA . . . F 2 -22.011 59.962 38.194 1 97.67 ? P2A COA 401 F 1 HETATM 29 O O4A COA . . . F 2 -23.01 58.925 38.665 1 71.86 ? O4A COA 401 F 1 HETATM 30 O O5A COA . . . F 2 -20.631 59.606 38.718 1 98.28 ? O5A COA 401 F 1 HETATM 31 O O6A COA . . . F 2 -21.984 60.019 36.546 1 74.99 ? O6A COA 401 F 1 HETATM 32 C CBP COA . . . F 2 -21.916 58.767 34.546 1 66.55 ? CBP COA 401 F 1 HETATM 33 C CCP COA . . . F 2 -22.693 59.026 35.859 1 87.1 ? CCP COA 401 F 1 HETATM 34 C CDP COA . . . F 2 -22.898 58.38 33.414 1 77.4 ? CDP COA 401 F 1 HETATM 35 C CEP COA . . . F 2 -21.158 60.045 34.167 1 65.64 ? CEP COA 401 F 1 HETATM 36 C CAP COA . . . F 2 -20.913 57.589 34.801 1 69.44 ? CAP COA 401 F 1 HETATM 37 O OAP COA . . . F 2 -21.568 56.582 35.493 1 84.24 ? OAP COA 401 F 1 HETATM 38 C C9P COA . . . F 2 -20.35 57.053 33.522 1 75.66 ? C9P COA 401 F 1 HETATM 39 O O9P COA . . . F 2 -19.705 57.72 32.807 1 69.12 ? O9P COA 401 F 1 HETATM 40 N N8P COA . . . F 2 -20.593 55.659 33.173 1 84.63 ? N8P COA 401 F 1 HETATM 41 C C7P COA . . . F 2 -20.051 55.116 31.958 1 68.61 ? C7P COA 401 F 1 HETATM 42 C C6P COA . . . F 2 -20.887 55.559 30.687 1 79.99 ? C6P COA 401 F 1 HETATM 43 C C5P COA . . . F 2 -20.02 55.228 29.43 1 81.1 ? C5P COA 401 F 1 HETATM 44 O O5P COA . . . F 2 -20.066 54.144 28.987 1 98.26 ? O5P COA 401 F 1 HETATM 45 N N4P COA . . . F 2 -19.158 56.243 28.788 1 104.65 ? N4P COA 401 F 1 HETATM 46 C C3P COA . . . F 2 -18.353 55.892 27.605 1 107.35 ? C3P COA 401 F 1 HETATM 47 C C2P COA . . . F 2 -19.143 56.096 26.255 1 99.99 ? C2P COA 401 F 1 HETATM 48 S S1P COA . . . F 2 -20.776 55.274 26.248 1 110.23 ? S1P COA 401 F 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #