data_6VG0 # _model_server_result.job_id wDXmFNRMGsnEPuuqajV4vQ _model_server_result.datetime_utc '2024-11-22 22:06:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6VG0 # _exptl.entry_id 6VG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VG0 _cell.length_a 196.77 _cell.length_b 89.16 _cell.length_c 90.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,I,J 1 1 C,G,H,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 196.77 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 6VG0 _atom_sites.fract_transf_matrix[1][1] 0.005082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NDP A 1 501 1 NDP NDP . E 3 QWM B 1 501 1 QWM L1R . F 2 NDP B 1 502 2 NDP NDP . G 3 QWM C 1 501 2 QWM L1R . H 2 NDP C 1 502 3 NDP NDP . I 4 HOH A 1 601 10 HOH HOH . I 4 HOH A 2 602 47 HOH HOH . I 4 HOH A 3 603 58 HOH HOH . I 4 HOH A 4 604 72 HOH HOH . I 4 HOH A 5 605 90 HOH HOH . I 4 HOH A 6 606 32 HOH HOH . I 4 HOH A 7 607 29 HOH HOH . I 4 HOH A 8 608 46 HOH HOH . I 4 HOH A 9 609 9 HOH HOH . I 4 HOH A 10 610 49 HOH HOH . I 4 HOH A 11 611 52 HOH HOH . I 4 HOH A 12 612 35 HOH HOH . I 4 HOH A 13 613 13 HOH HOH . I 4 HOH A 14 614 18 HOH HOH . I 4 HOH A 15 615 23 HOH HOH . I 4 HOH A 16 616 91 HOH HOH . I 4 HOH A 17 617 88 HOH HOH . I 4 HOH A 18 618 56 HOH HOH . I 4 HOH A 19 619 26 HOH HOH . I 4 HOH A 20 620 97 HOH HOH . I 4 HOH A 21 621 50 HOH HOH . I 4 HOH A 22 622 79 HOH HOH . I 4 HOH A 23 623 83 HOH HOH . I 4 HOH A 24 624 31 HOH HOH . I 4 HOH A 25 625 43 HOH HOH . I 4 HOH A 26 626 61 HOH HOH . I 4 HOH A 27 627 37 HOH HOH . I 4 HOH A 28 628 93 HOH HOH . I 4 HOH A 29 629 42 HOH HOH . I 4 HOH A 30 630 71 HOH HOH . I 4 HOH A 31 631 33 HOH HOH . I 4 HOH A 32 632 75 HOH HOH . I 4 HOH A 33 633 80 HOH HOH . I 4 HOH A 34 634 84 HOH HOH . I 4 HOH A 35 635 73 HOH HOH . I 4 HOH A 36 636 98 HOH HOH . I 4 HOH A 37 637 51 HOH HOH . I 4 HOH A 38 638 1 HOH HOH . I 4 HOH A 39 639 81 HOH HOH . I 4 HOH A 40 640 4 HOH HOH . I 4 HOH A 41 641 92 HOH HOH . I 4 HOH A 42 642 94 HOH HOH . I 4 HOH A 43 643 28 HOH HOH . I 4 HOH A 44 644 2 HOH HOH . I 4 HOH A 45 645 6 HOH HOH . I 4 HOH A 46 646 96 HOH HOH . I 4 HOH A 47 647 60 HOH HOH . I 4 HOH A 48 648 5 HOH HOH . J 4 HOH B 1 601 22 HOH HOH . J 4 HOH B 2 602 63 HOH HOH . J 4 HOH B 3 603 36 HOH HOH . J 4 HOH B 4 604 67 HOH HOH . J 4 HOH B 5 605 89 HOH HOH . J 4 HOH B 6 606 11 HOH HOH . J 4 HOH B 7 607 53 HOH HOH . J 4 HOH B 8 608 87 HOH HOH . J 4 HOH B 9 609 38 HOH HOH . J 4 HOH B 10 610 86 HOH HOH . J 4 HOH B 11 611 69 HOH HOH . J 4 HOH B 12 612 76 HOH HOH . J 4 HOH B 13 613 48 HOH HOH . J 4 HOH B 14 614 12 HOH HOH . J 4 HOH B 15 615 99 HOH HOH . J 4 HOH B 16 616 78 HOH HOH . J 4 HOH B 17 617 40 HOH HOH . J 4 HOH B 18 618 77 HOH HOH . J 4 HOH B 19 619 62 HOH HOH . J 4 HOH B 20 620 59 HOH HOH . J 4 HOH B 21 621 68 HOH HOH . J 4 HOH B 22 622 70 HOH HOH . J 4 HOH B 23 623 39 HOH HOH . J 4 HOH B 24 624 7 HOH HOH . J 4 HOH B 25 625 30 HOH HOH . J 4 HOH B 26 626 57 HOH HOH . J 4 HOH B 27 627 74 HOH HOH . J 4 HOH B 28 628 85 HOH HOH . J 4 HOH B 29 629 27 HOH HOH . J 4 HOH B 30 630 8 HOH HOH . K 4 HOH C 1 601 19 HOH HOH . K 4 HOH C 2 602 16 HOH HOH . K 4 HOH C 3 603 34 HOH HOH . K 4 HOH C 4 604 54 HOH HOH . K 4 HOH C 5 605 44 HOH HOH . K 4 HOH C 6 606 24 HOH HOH . K 4 HOH C 7 607 14 HOH HOH . K 4 HOH C 8 608 41 HOH HOH . K 4 HOH C 9 609 21 HOH HOH . K 4 HOH C 10 610 65 HOH HOH . K 4 HOH C 11 611 25 HOH HOH . K 4 HOH C 12 612 64 HOH HOH . K 4 HOH C 13 613 55 HOH HOH . K 4 HOH C 14 614 15 HOH HOH . K 4 HOH C 15 615 66 HOH HOH . K 4 HOH C 16 616 45 HOH HOH . K 4 HOH C 17 617 20 HOH HOH . K 4 HOH C 18 618 3 HOH HOH . K 4 HOH C 19 619 82 HOH HOH . K 4 HOH C 20 620 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 2 42.42 -47.844 -28.297 1 46.98 ? PA NDP 502 B 1 HETATM 2 O O1A NDP . . . F 2 42.489 -47.078 -27.034 1 35.71 ? O1A NDP 502 B 1 HETATM 3 O O2A NDP . . . F 2 42.337 -49.356 -28.141 1 32.69 ? O2A NDP 502 B 1 HETATM 4 O O5B NDP . . . F 2 43.698 -47.557 -29.231 1 38.7 ? O5B NDP 502 B 1 HETATM 5 C C5B NDP . . . F 2 43.696 -46.504 -30.215 1 33.81 ? C5B NDP 502 B 1 HETATM 6 C C4B NDP . . . F 2 45.129 -46.112 -30.466 1 40.44 ? C4B NDP 502 B 1 HETATM 7 O O4B NDP . . . F 2 45.686 -45.525 -29.267 1 39.11 ? O4B NDP 502 B 1 HETATM 8 C C3B NDP . . . F 2 46.057 -47.271 -30.818 1 39.02 ? C3B NDP 502 B 1 HETATM 9 O O3B NDP . . . F 2 46.034 -47.547 -32.214 1 47.87 ? O3B NDP 502 B 1 HETATM 10 C C2B NDP . . . F 2 47.4 -46.705 -30.372 1 34.85 ? C2B NDP 502 B 1 HETATM 11 O O2B NDP . . . F 2 47.847 -45.735 -31.342 1 38.24 ? O2B NDP 502 B 1 HETATM 12 C C1B NDP . . . F 2 47.026 -45.955 -29.096 1 35.57 ? C1B NDP 502 B 1 HETATM 13 N N9A NDP . . . F 2 47.088 -46.785 -27.897 1 43.85 ? N9A NDP 502 B 1 HETATM 14 C C8A NDP . . . F 2 46.047 -47.135 -27.081 1 36.02 ? C8A NDP 502 B 1 HETATM 15 N N7A NDP . . . F 2 46.391 -47.904 -26.073 1 32.55 ? N7A NDP 502 B 1 HETATM 16 C C5A NDP . . . F 2 47.754 -48.069 -26.242 1 34.69 ? C5A NDP 502 B 1 HETATM 17 C C6A NDP . . . F 2 48.724 -48.783 -25.505 1 35.91 ? C6A NDP 502 B 1 HETATM 18 N N6A NDP . . . F 2 48.449 -49.495 -24.406 1 28.79 ? N6A NDP 502 B 1 HETATM 19 N N1A NDP . . . F 2 50.001 -48.741 -25.942 1 32.15 ? N1A NDP 502 B 1 HETATM 20 C C2A NDP . . . F 2 50.283 -48.035 -27.04 1 28.25 ? C2A NDP 502 B 1 HETATM 21 N N3A NDP . . . F 2 49.457 -47.327 -27.814 1 29.65 ? N3A NDP 502 B 1 HETATM 22 C C4A NDP . . . F 2 48.205 -47.386 -27.36 1 36.75 ? C4A NDP 502 B 1 HETATM 23 O O3 NDP . . . F 2 41.176 -47.403 -29.187 1 36.62 ? O3 NDP 502 B 1 HETATM 24 P PN NDP . . . F 2 40.371 -48.13 -30.352 1 44.26 ? PN NDP 502 B 1 HETATM 25 O O1N NDP . . . F 2 39.491 -47.183 -31.072 1 45.15 ? O1N NDP 502 B 1 HETATM 26 O O2N NDP . . . F 2 41.4 -48.846 -31.224 1 41.03 ? O2N NDP 502 B 1 HETATM 27 O O5D NDP . . . F 2 39.519 -49.285 -29.618 1 33.65 ? O5D NDP 502 B 1 HETATM 28 C C5D NDP . . . F 2 39.715 -50.693 -29.862 1 33.72 ? C5D NDP 502 B 1 HETATM 29 C C4D NDP . . . F 2 38.606 -51.477 -29.206 1 35.53 ? C4D NDP 502 B 1 HETATM 30 O O4D NDP . . . F 2 38.596 -51.217 -27.784 1 41.35 ? O4D NDP 502 B 1 HETATM 31 C C3D NDP . . . F 2 37.19 -51.185 -29.718 1 44.52 ? C3D NDP 502 B 1 HETATM 32 O O3D NDP . . . F 2 36.477 -52.391 -29.965 1 46.88 ? O3D NDP 502 B 1 HETATM 33 C C2D NDP . . . F 2 36.562 -50.371 -28.581 1 39.7 ? C2D NDP 502 B 1 HETATM 34 O O2D NDP . . . F 2 35.16 -50.593 -28.488 1 43.88 ? O2D NDP 502 B 1 HETATM 35 C C1D NDP . . . F 2 37.272 -50.955 -27.364 1 36.62 ? C1D NDP 502 B 1 HETATM 36 N N1N NDP . . . F 2 37.324 -50.061 -26.213 1 35.5 ? N1N NDP 502 B 1 HETATM 37 C C2N NDP . . . F 2 37.345 -50.576 -24.909 1 41.89 ? C2N NDP 502 B 1 HETATM 38 C C3N NDP . . . F 2 37.393 -49.792 -23.813 1 47.44 ? C3N NDP 502 B 1 HETATM 39 C C7N NDP . . . F 2 37.414 -50.457 -22.502 1 53.94 ? C7N NDP 502 B 1 HETATM 40 O O7N NDP . . . F 2 36.931 -51.591 -22.364 1 46.19 ? O7N NDP 502 B 1 HETATM 41 N N7N NDP . . . F 2 37.965 -49.8 -21.488 1 49.1 ? N7N NDP 502 B 1 HETATM 42 C C4N NDP . . . F 2 37.424 -48.298 -23.956 1 47.1 ? C4N NDP 502 B 1 HETATM 43 C C5N NDP . . . F 2 37.399 -47.86 -25.379 1 45.34 ? C5N NDP 502 B 1 HETATM 44 C C6N NDP . . . F 2 37.353 -48.712 -26.396 1 39.11 ? C6N NDP 502 B 1 HETATM 45 P P2B NDP . . . F 2 48.744 -45.994 -32.648 1 41.79 ? P2B NDP 502 B 1 HETATM 46 O O1X NDP . . . F 2 47.952 -46.742 -33.671 1 40.65 ? O1X NDP 502 B 1 HETATM 47 O O2X NDP . . . F 2 49.198 -44.613 -33.127 1 47.62 ? O2X NDP 502 B 1 HETATM 48 O O3X NDP . . . F 2 49.978 -46.763 -32.161 1 39.01 ? O3X NDP 502 B 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #