data_6VG5 # _model_server_result.job_id Z2S4X-AqKMmDbZgs7Te-2A _model_server_result.datetime_utc '2025-02-28 21:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 6VG5 # _exptl.entry_id 6VG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.538 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-amino-N-(5-phenyl-1,3,4-thiadiazol-2-yl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]thieno[3,2-e]pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 6VG5 _cell.length_a 40.4 _cell.length_b 25.5 _cell.length_c 68.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 37.352352 0 68.43217 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H19 N5 O S2' _chem_comp.formula_weight 421.538 _chem_comp.id QWY _chem_comp.mon_nstd_flag . _chem_comp.name 3-amino-N-(5-phenyl-1,3,4-thiadiazol-2-yl)-6,7,8,9-tetrahydro-5H-cyclohepta[b]thieno[3,2-e]pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAS CBC QWY sing 244 n n CAS CAR QWY sing 245 n n CBC CBB QWY sing 246 n n CAR CAQ QWY sing 247 n n CBB CBA QWY sing 248 n n CAQ CAP QWY sing 249 n n CBA CAP QWY doub 250 n y CBA NAZ QWY sing 251 n y CAP CAO QWY sing 252 n y NAZ CAY QWY doub 253 n y CAO CAN QWY doub 254 n y CAY CAN QWY sing 255 n y CAY SAX QWY sing 256 n y CAN CAM QWY sing 257 n y SAX CAL QWY sing 258 n y CAM NAB QWY sing 259 n n CAM CAL QWY doub 260 n y CAL CAK QWY sing 261 n n CAK OAA QWY doub 262 n n CAK NAJ QWY sing 263 n n NAJ CAI QWY sing 264 n n CAI NAH QWY doub 265 n y CAI SAW QWY sing 266 n y NAH NAG QWY sing 267 n y SAW CAF QWY sing 268 n y NAG CAF QWY doub 269 n y CAF CAE QWY sing 270 n n CAE CAV QWY doub 271 n y CAE CAD QWY sing 272 n y CAV CAU QWY sing 273 n y CAD CAC QWY doub 274 n y CAU CAT QWY doub 275 n y CAC CAT QWY sing 276 n y CAD H1 QWY sing 277 n n CAC H2 QWY sing 278 n n CAT H3 QWY sing 279 n n CAU H4 QWY sing 280 n n CAV H5 QWY sing 281 n n NAJ H6 QWY sing 282 n n CBB H7 QWY sing 283 n n CBB H8 QWY sing 284 n n CBC H9 QWY sing 285 n n CBC H10 QWY sing 286 n n CAS H11 QWY sing 287 n n CAS H12 QWY sing 288 n n CAR H13 QWY sing 289 n n CAR H14 QWY sing 290 n n CAQ H15 QWY sing 291 n n CAQ H16 QWY sing 292 n n CAO H17 QWY sing 293 n n NAB H18 QWY sing 294 n n NAB H19 QWY sing 295 n n # _atom_sites.entry_id 6VG5 _atom_sites.fract_transf_matrix[1][1] 0.024752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.039216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 201 2 NO3 NO3 . D 2 NO3 A 1 202 5 NO3 NO3 . E 2 NO3 A 1 203 4 NO3 NO3 . F 2 NO3 A 1 204 6 NO3 NO3 . G 2 NO3 A 1 205 7 NO3 NO3 . H 2 NO3 A 1 206 9 NO3 NO3 . I 3 GOL A 1 207 1 GOL GOL . J 4 QWY B 1 201 1 QWY DRG . K 2 NO3 B 1 202 13 NO3 NO3 . L 2 NO3 B 1 203 3 NO3 NO3 . M 2 NO3 B 1 204 8 NO3 NO3 . N 2 NO3 B 1 205 1 NO3 NO3 . O 2 NO3 B 1 206 15 NO3 NO3 . P 2 NO3 B 1 207 14 NO3 NO3 . Q 2 NO3 B 1 208 12 NO3 NO3 . R 2 NO3 B 1 209 11 NO3 NO3 . S 3 GOL B 1 210 2 GOL GOL . T 5 HOH A 1 301 53 HOH HOH . T 5 HOH A 2 302 35 HOH HOH . T 5 HOH A 3 303 30 HOH HOH . T 5 HOH A 4 304 11 HOH HOH . T 5 HOH A 5 305 19 HOH HOH . T 5 HOH A 6 306 50 HOH HOH . T 5 HOH A 7 307 9 HOH HOH . T 5 HOH A 8 308 5 HOH HOH . T 5 HOH A 9 309 43 HOH HOH . T 5 HOH A 10 310 1 HOH HOH . T 5 HOH A 11 311 3 HOH HOH . T 5 HOH A 12 312 40 HOH HOH . T 5 HOH A 13 313 21 HOH HOH . T 5 HOH A 14 314 36 HOH HOH . T 5 HOH A 15 315 37 HOH HOH . T 5 HOH A 16 316 24 HOH HOH . T 5 HOH A 17 317 44 HOH HOH . T 5 HOH A 18 318 7 HOH HOH . T 5 HOH A 19 319 51 HOH HOH . T 5 HOH A 20 320 34 HOH HOH . T 5 HOH A 21 321 26 HOH HOH . T 5 HOH A 22 322 49 HOH HOH . T 5 HOH A 23 323 23 HOH HOH . U 5 HOH B 1 301 32 HOH HOH . U 5 HOH B 2 302 47 HOH HOH . U 5 HOH B 3 303 28 HOH HOH . U 5 HOH B 4 304 42 HOH HOH . U 5 HOH B 5 305 41 HOH HOH . U 5 HOH B 6 306 25 HOH HOH . U 5 HOH B 7 307 8 HOH HOH . U 5 HOH B 8 308 31 HOH HOH . U 5 HOH B 9 309 18 HOH HOH . U 5 HOH B 10 310 52 HOH HOH . U 5 HOH B 11 311 15 HOH HOH . U 5 HOH B 12 312 6 HOH HOH . U 5 HOH B 13 313 17 HOH HOH . U 5 HOH B 14 314 10 HOH HOH . U 5 HOH B 15 315 12 HOH HOH . U 5 HOH B 16 316 2 HOH HOH . U 5 HOH B 17 317 45 HOH HOH . U 5 HOH B 18 318 20 HOH HOH . U 5 HOH B 19 319 16 HOH HOH . U 5 HOH B 20 320 4 HOH HOH . U 5 HOH B 21 321 13 HOH HOH . U 5 HOH B 22 322 14 HOH HOH . U 5 HOH B 23 323 29 HOH HOH . U 5 HOH B 24 324 38 HOH HOH . U 5 HOH B 25 325 22 HOH HOH . U 5 HOH B 26 326 48 HOH HOH . U 5 HOH B 27 327 27 HOH HOH . U 5 HOH B 28 328 39 HOH HOH . U 5 HOH B 29 329 33 HOH HOH . U 5 HOH B 30 330 54 HOH HOH . U 5 HOH B 31 331 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD QWY . A . J 4 16.944 3.457 38.98 0.5 10.06 ? CAD QWY 201 B 1 HETATM 2 C CAD QWY . B . J 4 21.249 7.086 38.495 0.5 13.59 ? CAD QWY 201 B 1 HETATM 3 C CAC QWY . A . J 4 17.032 3.906 40.296 0.5 9.99 ? CAC QWY 201 B 1 HETATM 4 C CAC QWY . B . J 4 21.44 6.677 39.813 0.5 12.76 ? CAC QWY 201 B 1 HETATM 5 C CAT QWY . A . J 4 17.358 5.23 40.569 0.5 9.77 ? CAT QWY 201 B 1 HETATM 6 C CAT QWY . B . J 4 21.218 5.352 40.173 0.5 13 ? CAT QWY 201 B 1 HETATM 7 C CAU QWY . A . J 4 17.597 6.107 39.521 0.5 9.9 ? CAU QWY 201 B 1 HETATM 8 C CAU QWY . B . J 4 20.807 4.436 39.212 0.5 13.47 ? CAU QWY 201 B 1 HETATM 9 C CAV QWY . A . J 4 17.508 5.656 38.206 0.5 10.29 ? CAV QWY 201 B 1 HETATM 10 C CAV QWY . B . J 4 20.617 4.849 37.895 0.5 13.55 ? CAV QWY 201 B 1 HETATM 11 C CAE QWY . A . J 4 17.178 4.334 37.927 0.5 9.94 ? CAE QWY 201 B 1 HETATM 12 C CAE QWY . B . J 4 20.84 6.175 37.53 0.5 13.49 ? CAE QWY 201 B 1 HETATM 13 C CAF QWY . A . J 4 17.106 3.925 36.65 0.5 9.97 ? CAF QWY 201 B 1 HETATM 14 C CAF QWY . B . J 4 20.649 6.565 36.263 0.5 13.28 ? CAF QWY 201 B 1 HETATM 15 S SAW QWY . A . J 4 16.845 4.922 35.32 0.5 9.52 ? SAW QWY 201 B 1 HETATM 16 S SAW QWY . B . J 4 20.666 5.56 34.934 0.5 11.07 ? SAW QWY 201 B 1 HETATM 17 N NAG QWY . A . J 4 17.242 2.652 36.238 0.5 10.49 ? NAG QWY 201 B 1 HETATM 18 N NAG QWY . B . J 4 20.403 7.828 35.87 0.5 14.16 ? NAG QWY 201 B 1 HETATM 19 N NAH QWY . A . J 4 17.151 2.476 35.029 0.5 9.96 ? NAH QWY 201 B 1 HETATM 20 N NAH QWY . B . J 4 20.249 7.986 34.676 0.5 12.72 ? NAH QWY 201 B 1 HETATM 21 C CAI QWY . A . J 4 16.924 3.582 34.288 0.5 9.67 ? CAI QWY 201 B 1 HETATM 22 C CAI QWY . B . J 4 20.352 6.876 33.921 0.5 12.57 ? CAI QWY 201 B 1 HETATM 23 N NAJ QWY . A . J 4 16.812 3.578 32.941 0.5 8.83 ? NAJ QWY 201 B 1 HETATM 24 N NAJ QWY . B . J 4 20.2 6.862 32.581 0.5 11.69 ? NAJ QWY 201 B 1 HETATM 25 C CAK QWY . A . J 4 16.521 4.727 32.281 0.5 8.9 ? CAK QWY 201 B 1 HETATM 26 C CAK QWY . B . J 4 20.424 5.724 31.88 0.5 11.42 ? CAK QWY 201 B 1 HETATM 27 O OAA QWY . A . J 4 16.339 5.788 32.874 0.5 8.28 ? OAA QWY 201 B 1 HETATM 28 O OAA QWY . B . J 4 20.774 4.673 32.415 0.5 10.27 ? OAA QWY 201 B 1 HETATM 29 C CAL QWY . A . J 4 16.496 4.667 30.918 0.5 9.51 ? CAL QWY 201 B 1 HETATM 30 C CAL QWY . B . J 4 20.199 5.786 30.541 0.5 11.19 ? CAL QWY 201 B 1 HETATM 31 S SAX QWY . A . J 4 16.741 3.302 29.972 0.5 10.1 ? SAX QWY 201 B 1 HETATM 32 S SAX QWY . B . J 4 19.752 7.149 29.678 0.5 11.38 ? SAX QWY 201 B 1 HETATM 33 C CAY QWY . A . J 4 16.571 4.104 28.494 0.5 8.79 ? CAY QWY 201 B 1 HETATM 34 C CAY QWY . B . J 4 19.675 6.372 28.192 0.5 10.34 ? CAY QWY 201 B 1 HETATM 35 N NAZ QWY . A . J 4 16.641 3.631 27.228 0.5 9.38 ? NAZ QWY 201 B 1 HETATM 36 N NAZ QWY . B . J 4 19.365 6.86 26.975 0.5 10.49 ? NAZ QWY 201 B 1 HETATM 37 C CBA QWY . A . J 4 16.475 4.433 26.172 0.5 8.82 ? CBA QWY 201 B 1 HETATM 38 C CBA QWY . B . J 4 19.359 6.077 25.894 0.5 10.86 ? CBA QWY 201 B 1 HETATM 39 C CBB QWY . A . J 4 16.579 3.778 24.939 0.5 9.19 ? CBB QWY 201 B 1 HETATM 40 C CBB QWY . B . J 4 19.013 6.761 24.732 0.5 10.4 ? CBB QWY 201 B 1 HETATM 41 C CBC QWY . A . J 4 17.698 4.387 24.119 0.5 8.99 ? CBC QWY 201 B 1 HETATM 42 C CBC QWY . B . J 4 17.773 6.126 24.135 0.5 10.89 ? CBC QWY 201 B 1 HETATM 43 C CAS QWY . A . J 4 17.197 5.638 23.449 0.5 9.03 ? CAS QWY 201 B 1 HETATM 44 C CAS QWY . B . J 4 18.191 4.92 23.342 0.5 10.62 ? CAS QWY 201 B 1 HETATM 45 C CAR QWY . A . J 4 17.231 6.796 24.451 0.5 8.86 ? CAR QWY 201 B 1 HETATM 46 C CAR QWY . B . J 4 18.371 3.717 24.281 0.5 10.86 ? CAR QWY 201 B 1 HETATM 47 C CAQ QWY . A . J 4 16.034 6.745 25.408 0.5 9.54 ? CAQ QWY 201 B 1 HETATM 48 C CAQ QWY . B . J 4 19.72 3.777 25.027 0.5 11.09 ? CAQ QWY 201 B 1 HETATM 49 C CAP QWY . A . J 4 16.231 5.769 26.389 0.5 8.64 ? CAP QWY 201 B 1 HETATM 50 C CAP QWY . B . J 4 19.674 4.744 26.035 0.5 10.91 ? CAP QWY 201 B 1 HETATM 51 C CAO QWY . A . J 4 16.162 6.24 27.703 0.5 8.24 ? CAO QWY 201 B 1 HETATM 52 C CAO QWY . B . J 4 19.992 4.261 27.303 0.5 10.53 ? CAO QWY 201 B 1 HETATM 53 C CAN QWY . A . J 4 16.333 5.413 28.751 0.5 8.9 ? CAN QWY 201 B 1 HETATM 54 C CAN QWY . B . J 4 19.992 5.069 28.377 0.5 10.85 ? CAN QWY 201 B 1 HETATM 55 C CAM QWY . A . J 4 16.296 5.716 30.092 0.5 9.18 ? CAM QWY 201 B 1 HETATM 56 C CAM QWY . B . J 4 20.278 4.751 29.682 0.5 10.75 ? CAM QWY 201 B 1 HETATM 57 N NAB QWY . A . J 4 16.074 6.95 30.538 0.5 10.92 ? NAB QWY 201 B 1 HETATM 58 N NAB QWY . B . J 4 20.611 3.519 30.057 0.5 12.38 ? NAB QWY 201 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #