data_6VG9 # _model_server_result.job_id zyRInLVz219zkuu9I-eOJg _model_server_result.datetime_utc '2024-11-16 06:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6VG9 # _exptl.entry_id 6VG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VG9 _cell.length_a 90.571 _cell.length_b 90.571 _cell.length_c 133.829 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 B MN MN . A MN 201 1_555 E O01 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 B MN MN . A MN 201 1_555 E O02 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? metalc ? metalc8 C MN MN . A MN 202 1_555 E O03 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O02 QVV . A QVV 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc10 C MN MN . A MN 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 6VG9 _atom_sites.fract_transf_matrix[1][1] 0.011041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 QQ4 A 1 203 401 QQ4 PVP . E 4 QVV A 1 204 501 QVV 248 . F 5 SO4 A 1 205 1 SO4 SO4 . G 6 HOH A 1 301 9 HOH HOH . G 6 HOH A 2 302 27 HOH HOH . G 6 HOH A 3 303 8 HOH HOH . G 6 HOH A 4 304 7 HOH HOH . G 6 HOH A 5 305 17 HOH HOH . G 6 HOH A 6 306 22 HOH HOH . G 6 HOH A 7 307 19 HOH HOH . G 6 HOH A 8 308 5 HOH HOH . G 6 HOH A 9 309 29 HOH HOH . G 6 HOH A 10 310 13 HOH HOH . G 6 HOH A 11 311 23 HOH HOH . G 6 HOH A 12 312 21 HOH HOH . G 6 HOH A 13 313 24 HOH HOH . G 6 HOH A 14 314 12 HOH HOH . G 6 HOH A 15 315 16 HOH HOH . G 6 HOH A 16 316 14 HOH HOH . G 6 HOH A 17 317 30 HOH HOH . G 6 HOH A 18 318 15 HOH HOH . G 6 HOH A 19 319 1 HOH HOH . G 6 HOH A 20 320 25 HOH HOH . G 6 HOH A 21 321 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 QQ4 . . . D 3 43.347 36.455 13.714 1 114.54 ? C11 QQ4 203 A 1 HETATM 2 C C10 QQ4 . . . D 3 49.161 31.543 10.897 1 100.97 ? C10 QQ4 203 A 1 HETATM 3 C C01 QQ4 . . . D 3 42.274 35.383 13.533 1 123.95 ? C01 QQ4 203 A 1 HETATM 4 C C02 QQ4 . . . D 3 42.83 34.207 12.703 1 117.37 ? C02 QQ4 203 A 1 HETATM 5 C C03 QQ4 . . . D 3 42.593 32.815 13.325 1 112.13 ? C03 QQ4 203 A 1 HETATM 6 C C04 QQ4 . . . D 3 43.258 31.779 12.398 1 109.26 ? C04 QQ4 203 A 1 HETATM 7 C C05 QQ4 . . . D 3 44.634 31.23 12.811 1 105.17 ? C05 QQ4 203 A 1 HETATM 8 C C06 QQ4 . . . D 3 45.117 30.4 11.592 1 104.52 ? C06 QQ4 203 A 1 HETATM 9 C C07 QQ4 . . . D 3 46.63 30.209 11.35 1 108.88 ? C07 QQ4 203 A 1 HETATM 10 C C08 QQ4 . . . D 3 46.997 30.534 9.889 1 103.11 ? C08 QQ4 203 A 1 HETATM 11 C C09 QQ4 . . . D 3 48.46 30.984 9.647 1 103.37 ? C09 QQ4 203 A 1 HETATM 12 C C22 QQ4 . . . D 3 40.09 36.739 13.772 1 119.56 ? C22 QQ4 203 A 1 HETATM 13 C C23 QQ4 . . . D 3 40.509 35.913 11.584 1 119.73 ? C23 QQ4 203 A 1 HETATM 14 C C24 QQ4 . . . D 3 39.186 36.686 11.543 1 116.09 ? C24 QQ4 203 A 1 HETATM 15 C C25 QQ4 . . . D 3 39.276 37.559 12.778 1 122.73 ? C25 QQ4 203 A 1 HETATM 16 C C26 QQ4 . . . D 3 40.477 32.56 14.804 1 106.55 ? C26 QQ4 203 A 1 HETATM 17 C C27 QQ4 . . . D 3 38.958 32.468 14.56 1 105.19 ? C27 QQ4 203 A 1 HETATM 18 C C28 QQ4 . . . D 3 38.799 31.926 13.137 1 106.47 ? C28 QQ4 203 A 1 HETATM 19 C C29 QQ4 . . . D 3 40.164 32.134 12.478 1 112.92 ? C29 QQ4 203 A 1 HETATM 20 C C30 QQ4 . . . D 3 46.166 33.324 12.351 1 119.58 ? C30 QQ4 203 A 1 HETATM 21 C C31 QQ4 . . . D 3 46.993 34.248 13.234 1 126.74 ? C31 QQ4 203 A 1 HETATM 22 C C32 QQ4 . . . D 3 47.137 33.517 14.547 1 118.03 ? C32 QQ4 203 A 1 HETATM 23 C C33 QQ4 . . . D 3 45.919 32.598 14.614 1 111.06 ? C33 QQ4 203 A 1 HETATM 24 C C34 QQ4 . . . D 3 46.676 27.668 10.72 1 96.39 ? C34 QQ4 203 A 1 HETATM 25 C C35 QQ4 . . . D 3 46.94 26.409 11.554 1 86.38 ? C35 QQ4 203 A 1 HETATM 26 C C36 QQ4 . . . D 3 47.851 26.825 12.662 1 90.17 ? C36 QQ4 203 A 1 HETATM 27 C C37 QQ4 . . . D 3 47.696 28.314 12.798 1 98.03 ? C37 QQ4 203 A 1 HETATM 28 C C38 QQ4 . . . D 3 50.496 29.345 9.584 1 102.4 ? C38 QQ4 203 A 1 HETATM 29 C C39 QQ4 . . . D 3 48.93 29.224 7.791 1 110.11 ? C39 QQ4 203 A 1 HETATM 30 C C40 QQ4 . . . D 3 50.021 28.185 7.533 1 99.7 ? C40 QQ4 203 A 1 HETATM 31 C C41 QQ4 . . . D 3 51.17 28.675 8.384 1 102.55 ? C41 QQ4 203 A 1 HETATM 32 N N03 QQ4 . . . D 3 41.042 35.973 12.967 1 126.92 ? N03 QQ4 203 A 1 HETATM 33 N N04 QQ4 . . . D 3 41.156 32.518 13.503 1 113.41 ? N04 QQ4 203 A 1 HETATM 34 N N05 QQ4 . . . D 3 45.523 32.316 13.221 1 113.19 ? N05 QQ4 203 A 1 HETATM 35 N N06 QQ4 . . . D 3 46.977 28.82 11.614 1 101.59 ? N06 QQ4 203 A 1 HETATM 36 N N07 QQ4 . . . D 3 49.252 29.913 9.048 1 103.79 ? N07 QQ4 203 A 1 HETATM 37 O O02 QQ4 . . . D 3 40.992 35.376 10.637 1 117.98 ? O02 QQ4 203 A 1 HETATM 38 O O03 QQ4 . . . D 3 40.355 31.998 11.305 1 108.6 ? O03 QQ4 203 A 1 HETATM 39 O O04 QQ4 . . . D 3 46.071 33.403 11.165 1 111.72 ? O04 QQ4 203 A 1 HETATM 40 O O06 QQ4 . . . D 3 48.11 28.977 13.704 1 95.42 ? O06 QQ4 203 A 1 HETATM 41 O O07 QQ4 . . . D 3 47.988 29.436 7.088 1 112.93 ? O07 QQ4 203 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #