data_6VGC
#
_model_server_result.job_id            YD6BH5Vk9ojDyBq3Dpno3w 
_model_server_result.datetime_utc      '2024-12-27 01:23:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":201}' 
#
_entry.id    6VGC 
#
_exptl.entry_id    6VGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              361.434 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.83 
_cell.angle_gamma         90 
_cell.entry_id            6VGC 
_cell.length_a            65.911 
_cell.length_b            101.488 
_cell.length_c            111.864 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,P,Q,R 1 1 
D,E,F,K,L,M,N,O,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 60 A GLN 58 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 A OD1 ASP 64 A ASP 62 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc3 B OE1 GLN 60 B GLN 58 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 I CA CA . B CA 202 1_555 C OE1 GLN 60 C GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc5 D OE1 GLN 60 D GLN 58 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 L CA CA . D CA 202 1_555 E OE1 GLN 60 E GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc7 L CA CA . D CA 202 1_555 F OE1 GLN 60 F GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc8 L CA CA . D CA 202 1_555 F OD1 ASP 64 F ASP 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
#
_chem_comp.formula           'C23 H23 N O3' 
_chem_comp.formula_weight    361.434 
_chem_comp.id                QY1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C20 QY1 sing 325 n n 
C18 C17 QY1 sing 326 n n 
C8 C5 QY1 doub 327 n y 
C8 C14 QY1 sing 328 n y 
C20 C21 QY1 sing 329 n n 
C5 C12 QY1 sing 330 n y 
O27 C14 QY1 sing 331 n n 
O27 C22 QY1 sing 332 n n 
C10 C4 QY1 doub 333 n y 
C10 C15 QY1 sing 334 n y 
C4 C11 QY1 sing 335 n y 
C14 C9 QY1 doub 336 n y 
C17 C19 QY1 sing 337 n n 
C12 C23 QY1 sing 338 n n 
C12 C6 QY1 doub 339 n y 
C21 C23 QY1 sing 340 n n 
C21 C19 QY1 sing 341 n n 
C22 C15 QY1 sing 342 n n 
C15 N24 QY1 doub 343 n y 
C23 C16 QY1 sing 344 n n 
C11 C3 QY1 doub 345 n y 
C11 C13 QY1 sing 346 n y 
C9 C6 QY1 sing 347 n y 
C3 C1 QY1 sing 348 n y 
N24 C13 QY1 sing 349 n y 
C13 C7 QY1 doub 350 n y 
C16 O25 QY1 doub 351 n n 
C16 O26 QY1 sing 352 n n 
C1 C2 QY1 doub 353 n y 
C7 C2 QY1 sing 354 n y 
C7 H1 QY1 sing 355 n n 
C6 H2 QY1 sing 356 n n 
C1 H3 QY1 sing 357 n n 
C5 H4 QY1 sing 358 n n 
C4 H5 QY1 sing 359 n n 
C3 H6 QY1 sing 360 n n 
C2 H7 QY1 sing 361 n n 
C8 H8 QY1 sing 362 n n 
C9 H9 QY1 sing 363 n n 
C10 H10 QY1 sing 364 n n 
C17 H11 QY1 sing 365 n n 
C17 H12 QY1 sing 366 n n 
C18 H13 QY1 sing 367 n n 
C18 H14 QY1 sing 368 n n 
C19 H15 QY1 sing 369 n n 
C19 H16 QY1 sing 370 n n 
C20 H17 QY1 sing 371 n n 
C20 H18 QY1 sing 372 n n 
C21 H19 QY1 sing 373 n n 
C22 H20 QY1 sing 374 n n 
C22 H21 QY1 sing 375 n n 
C23 H22 QY1 sing 376 n n 
O26 H23 QY1 sing 377 n n 
#
_atom_sites.entry_id                     6VGC 
_atom_sites.fract_transf_matrix[1][1]    0.015172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002629 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 QY1 A 1 201 1 QY1 SX1 . 
H 2 QY1 B 1 201 2 QY1 SX1 . 
I 3 CA B 1 202 2 CA CA . 
J 2 QY1 C 1 201 3 QY1 SX1 . 
K 2 QY1 D 1 201 4 QY1 SX1 . 
L 3 CA D 1 202 1 CA CA . 
M 2 QY1 E 1 201 5 QY1 SX1 . 
N 2 QY1 F 1 201 6 QY1 SX1 . 
O 4 BOG F 1 202 3 BOG BOG . 
P 5 HOH A 1 301 9 HOH HOH . 
P 5 HOH A 2 302 35 HOH HOH . 
P 5 HOH A 3 303 20 HOH HOH . 
P 5 HOH A 4 304 12 HOH HOH . 
P 5 HOH A 5 305 7 HOH HOH . 
P 5 HOH A 6 306 2 HOH HOH . 
P 5 HOH A 7 307 28 HOH HOH . 
P 5 HOH A 8 308 21 HOH HOH . 
P 5 HOH A 9 309 15 HOH HOH . 
P 5 HOH A 10 310 36 HOH HOH . 
P 5 HOH A 11 311 18 HOH HOH . 
Q 5 HOH B 1 301 14 HOH HOH . 
Q 5 HOH B 2 302 8 HOH HOH . 
Q 5 HOH B 3 303 24 HOH HOH . 
Q 5 HOH B 4 304 10 HOH HOH . 
Q 5 HOH B 5 305 27 HOH HOH . 
Q 5 HOH B 6 306 17 HOH HOH . 
Q 5 HOH B 7 307 23 HOH HOH . 
Q 5 HOH B 8 308 51 HOH HOH . 
Q 5 HOH B 9 309 11 HOH HOH . 
Q 5 HOH B 10 310 40 HOH HOH . 
Q 5 HOH B 11 311 29 HOH HOH . 
Q 5 HOH B 12 312 52 HOH HOH . 
Q 5 HOH B 13 313 46 HOH HOH . 
Q 5 HOH B 14 314 34 HOH HOH . 
R 5 HOH C 1 301 3 HOH HOH . 
R 5 HOH C 2 302 37 HOH HOH . 
R 5 HOH C 3 303 50 HOH HOH . 
R 5 HOH C 4 304 13 HOH HOH . 
R 5 HOH C 5 305 58 HOH HOH . 
R 5 HOH C 6 306 48 HOH HOH . 
R 5 HOH C 7 307 25 HOH HOH . 
R 5 HOH C 8 308 32 HOH HOH . 
R 5 HOH C 9 309 57 HOH HOH . 
R 5 HOH C 10 310 5 HOH HOH . 
S 5 HOH D 1 301 47 HOH HOH . 
S 5 HOH D 2 302 30 HOH HOH . 
S 5 HOH D 3 303 41 HOH HOH . 
S 5 HOH D 4 304 16 HOH HOH . 
S 5 HOH D 5 305 26 HOH HOH . 
S 5 HOH D 6 306 33 HOH HOH . 
S 5 HOH D 7 307 39 HOH HOH . 
S 5 HOH D 8 308 55 HOH HOH . 
T 5 HOH E 1 301 31 HOH HOH . 
T 5 HOH E 2 302 49 HOH HOH . 
T 5 HOH E 3 303 54 HOH HOH . 
T 5 HOH E 4 304 45 HOH HOH . 
T 5 HOH E 5 305 43 HOH HOH . 
T 5 HOH E 6 306 53 HOH HOH . 
T 5 HOH E 7 307 44 HOH HOH . 
U 5 HOH F 1 301 19 HOH HOH . 
U 5 HOH F 2 302 22 HOH HOH . 
U 5 HOH F 3 303 38 HOH HOH . 
U 5 HOH F 4 304 59 HOH HOH . 
U 5 HOH F 5 305 1 HOH HOH . 
U 5 HOH F 6 306 42 HOH HOH . 
U 5 HOH F 7 307 4 HOH HOH . 
U 5 HOH F 8 308 56 HOH HOH . 
U 5 HOH F 9 309 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 QY1 . . . N 2 25.697 1.923 -3.305 1 58.07 ? C7 QY1 201 F 1 
HETATM 2 C C6 QY1 . . . N 2 30.74 -1.939 -1.046 1 75.71 ? C6 QY1 201 F 1 
HETATM 3 C C1 QY1 . . . N 2 23.76 0.57 -3.806 1 55.62 ? C1 QY1 201 F 1 
HETATM 4 C C5 QY1 . . . N 2 31.743 -1.327 1.066 1 75.32 ? C5 QY1 201 F 1 
HETATM 5 C C4 QY1 . . . N 2 25.193 -0.427 -0.528 1 57.99 ? C4 QY1 201 F 1 
HETATM 6 C C3 QY1 . . . N 2 23.936 -0.103 -2.601 1 55.22 ? C3 QY1 201 F 1 
HETATM 7 C C2 QY1 . . . N 2 24.642 1.584 -4.159 1 57.48 ? C2 QY1 201 F 1 
HETATM 8 C C8 QY1 . . . N 2 31.017 -0.135 1.065 1 73.21 ? C8 QY1 201 F 1 
HETATM 9 C C9 QY1 . . . N 2 30.014 -0.748 -1.045 1 73.01 ? C9 QY1 201 F 1 
HETATM 10 C C10 QY1 . . . N 2 26.249 -0.069 0.297 1 59.68 ? C10 QY1 201 F 1 
HETATM 11 C C11 QY1 . . . N 2 24.996 0.237 -1.745 1 56.74 ? C11 QY1 201 F 1 
HETATM 12 C C12 QY1 . . . N 2 31.603 -2.23 0.01 1 77.85 ? C12 QY1 201 F 1 
HETATM 13 C C13 QY1 . . . N 2 25.898 1.268 -2.094 1 57.79 ? C13 QY1 201 F 1 
HETATM 14 C C14 QY1 . . . N 2 30.15 0.154 0.01 1 71.36 ? C14 QY1 201 F 1 
HETATM 15 C C15 QY1 . . . N 2 27.08 0.949 -0.128 1 61.4 ? C15 QY1 201 F 1 
HETATM 16 C C16 QY1 . . . N 2 33.855 -3.275 -0.36 1 81.61 ? C16 QY1 201 F 1 
HETATM 17 C C17 QY1 . . . N 2 32.699 -6.689 -0.169 1 80.11 ? C17 QY1 201 F 1 
HETATM 18 C C18 QY1 . . . N 2 31.329 -6.468 0.475 1 79.93 ? C18 QY1 201 F 1 
HETATM 19 C C19 QY1 . . . N 2 32.805 -5.677 -1.307 1 79.82 ? C19 QY1 201 F 1 
HETATM 20 C C20 QY1 . . . N 2 30.653 -5.364 -0.33 1 80.01 ? C20 QY1 201 F 1 
HETATM 21 C C21 QY1 . . . N 2 31.813 -4.578 -0.934 1 80.18 ? C21 QY1 201 F 1 
HETATM 22 C C22 QY1 . . . N 2 28.228 1.359 0.747 1 65.83 ? C22 QY1 201 F 1 
HETATM 23 C C23 QY1 . . . N 2 32.395 -3.534 0.004 1 79.29 ? C23 QY1 201 F 1 
HETATM 24 N N24 QY1 . . . N 2 26.926 1.618 -1.295 1 58.25 ? N24 QY1 201 F 1 
HETATM 25 O O25 QY1 . . . N 2 34.817 -3.47 0.372 1 84.46 ? O25 QY1 201 F 1 
HETATM 26 O O26 QY1 . . . N 2 33.985 -2.79 -1.624 1 81.09 ? O26 QY1 201 F 1 
HETATM 27 O O27 QY1 . . . N 2 29.442 1.317 0.002 1 70.3 ? O27 QY1 201 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#