data_6VGC
#
_model_server_result.job_id            KL0u-0JLiq0Q6JrCbN0Dew 
_model_server_result.datetime_utc      '2025-06-19 15:27:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":202}' 
#
_entry.id    6VGC 
#
_exptl.entry_id    6VGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.83 
_cell.angle_gamma         90 
_cell.entry_id            6VGC 
_cell.length_a            65.911 
_cell.length_b            101.488 
_cell.length_c            111.864 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,P,Q,R 1 1 
D,E,F,K,L,M,N,O,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             O 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 60 A GLN 58 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 A OD1 ASP 64 A ASP 62 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc3 B OE1 GLN 60 B GLN 58 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 I CA CA . B CA 202 1_555 C OE1 GLN 60 C GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc5 D OE1 GLN 60 D GLN 58 1_555 L CA CA . D CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 L CA CA . D CA 202 1_555 E OE1 GLN 60 E GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc7 L CA CA . D CA 202 1_555 F OE1 GLN 60 F GLN 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc8 L CA CA . D CA 202 1_555 F OD1 ASP 64 F ASP 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6VGC 
_atom_sites.fract_transf_matrix[1][1]    0.015172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002629 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 QY1 A 1 201 1 QY1 SX1 . 
H 2 QY1 B 1 201 2 QY1 SX1 . 
I 3 CA B 1 202 2 CA CA . 
J 2 QY1 C 1 201 3 QY1 SX1 . 
K 2 QY1 D 1 201 4 QY1 SX1 . 
L 3 CA D 1 202 1 CA CA . 
M 2 QY1 E 1 201 5 QY1 SX1 . 
N 2 QY1 F 1 201 6 QY1 SX1 . 
O 4 BOG F 1 202 3 BOG BOG . 
P 5 HOH A 1 301 9 HOH HOH . 
P 5 HOH A 2 302 35 HOH HOH . 
P 5 HOH A 3 303 20 HOH HOH . 
P 5 HOH A 4 304 12 HOH HOH . 
P 5 HOH A 5 305 7 HOH HOH . 
P 5 HOH A 6 306 2 HOH HOH . 
P 5 HOH A 7 307 28 HOH HOH . 
P 5 HOH A 8 308 21 HOH HOH . 
P 5 HOH A 9 309 15 HOH HOH . 
P 5 HOH A 10 310 36 HOH HOH . 
P 5 HOH A 11 311 18 HOH HOH . 
Q 5 HOH B 1 301 14 HOH HOH . 
Q 5 HOH B 2 302 8 HOH HOH . 
Q 5 HOH B 3 303 24 HOH HOH . 
Q 5 HOH B 4 304 10 HOH HOH . 
Q 5 HOH B 5 305 27 HOH HOH . 
Q 5 HOH B 6 306 17 HOH HOH . 
Q 5 HOH B 7 307 23 HOH HOH . 
Q 5 HOH B 8 308 51 HOH HOH . 
Q 5 HOH B 9 309 11 HOH HOH . 
Q 5 HOH B 10 310 40 HOH HOH . 
Q 5 HOH B 11 311 29 HOH HOH . 
Q 5 HOH B 12 312 52 HOH HOH . 
Q 5 HOH B 13 313 46 HOH HOH . 
Q 5 HOH B 14 314 34 HOH HOH . 
R 5 HOH C 1 301 3 HOH HOH . 
R 5 HOH C 2 302 37 HOH HOH . 
R 5 HOH C 3 303 50 HOH HOH . 
R 5 HOH C 4 304 13 HOH HOH . 
R 5 HOH C 5 305 58 HOH HOH . 
R 5 HOH C 6 306 48 HOH HOH . 
R 5 HOH C 7 307 25 HOH HOH . 
R 5 HOH C 8 308 32 HOH HOH . 
R 5 HOH C 9 309 57 HOH HOH . 
R 5 HOH C 10 310 5 HOH HOH . 
S 5 HOH D 1 301 47 HOH HOH . 
S 5 HOH D 2 302 30 HOH HOH . 
S 5 HOH D 3 303 41 HOH HOH . 
S 5 HOH D 4 304 16 HOH HOH . 
S 5 HOH D 5 305 26 HOH HOH . 
S 5 HOH D 6 306 33 HOH HOH . 
S 5 HOH D 7 307 39 HOH HOH . 
S 5 HOH D 8 308 55 HOH HOH . 
T 5 HOH E 1 301 31 HOH HOH . 
T 5 HOH E 2 302 49 HOH HOH . 
T 5 HOH E 3 303 54 HOH HOH . 
T 5 HOH E 4 304 45 HOH HOH . 
T 5 HOH E 5 305 43 HOH HOH . 
T 5 HOH E 6 306 53 HOH HOH . 
T 5 HOH E 7 307 44 HOH HOH . 
U 5 HOH F 1 301 19 HOH HOH . 
U 5 HOH F 2 302 22 HOH HOH . 
U 5 HOH F 3 303 38 HOH HOH . 
U 5 HOH F 4 304 59 HOH HOH . 
U 5 HOH F 5 305 1 HOH HOH . 
U 5 HOH F 6 306 42 HOH HOH . 
U 5 HOH F 7 307 4 HOH HOH . 
U 5 HOH F 8 308 56 HOH HOH . 
U 5 HOH F 9 309 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . O 4 25.882 -20.712 64.756 1 84.39 ? C1 BOG 202 F 1 
HETATM 2 O O1 BOG . . . O 4 27.205 -20.818 64.229 1 80.33 ? O1 BOG 202 F 1 
HETATM 3 C C2 BOG . . . O 4 25.274 -22.11 64.856 1 85.9 ? C2 BOG 202 F 1 
HETATM 4 O O2 BOG . . . O 4 25.167 -22.692 63.552 1 87.96 ? O2 BOG 202 F 1 
HETATM 5 C C3 BOG . . . O 4 23.894 -22.065 65.509 1 87.15 ? C3 BOG 202 F 1 
HETATM 6 O O3 BOG . . . O 4 23.457 -23.402 65.78 1 86.61 ? O3 BOG 202 F 1 
HETATM 7 C C4 BOG . . . O 4 23.898 -21.262 66.809 1 86.93 ? C4 BOG 202 F 1 
HETATM 8 O O4 BOG . . . O 4 22.541 -21.027 67.202 1 89.45 ? O4 BOG 202 F 1 
HETATM 9 C C5 BOG . . . O 4 24.636 -19.926 66.67 1 86.72 ? C5 BOG 202 F 1 
HETATM 10 O O5 BOG . . . O 4 25.918 -20.11 66.056 1 86.77 ? O5 BOG 202 F 1 
HETATM 11 C C6 BOG . . . O 4 24.846 -19.281 68.036 1 88.1 ? C6 BOG 202 F 1 
HETATM 12 O O6 BOG . . . O 4 24.232 -17.988 68.065 1 90.58 ? O6 BOG 202 F 1 
HETATM 13 C C1' BOG . . . O 4 27.709 -19.576 63.74 1 79.67 ? C1' BOG 202 F 1 
HETATM 14 C C2' BOG . . . O 4 28.388 -19.802 62.396 1 79.5 ? C2' BOG 202 F 1 
HETATM 15 C C3' BOG . . . O 4 29.883 -20.034 62.574 1 79.14 ? C3' BOG 202 F 1 
HETATM 16 C C4' BOG . . . O 4 30.617 -19.851 61.252 1 79.61 ? C4' BOG 202 F 1 
HETATM 17 C C5' BOG . . . O 4 31.856 -20.734 61.186 1 80.76 ? C5' BOG 202 F 1 
HETATM 18 C C6' BOG . . . O 4 31.916 -21.492 59.865 1 82.21 ? C6' BOG 202 F 1 
HETATM 19 C C7' BOG . . . O 4 33.234 -22.246 59.728 1 81.98 ? C7' BOG 202 F 1 
HETATM 20 C C8' BOG . . . O 4 33.058 -23.507 58.911 1 81.84 ? C8' BOG 202 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           20 
#