data_6VGI
#
_model_server_result.job_id            QFgrGzEpdGWpYh57kadcjg 
_model_server_result.datetime_utc      '2024-12-27 01:23:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    6VGI 
#
_exptl.entry_id    6VGI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.082 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[3-(tert-butylsulfanyl)-1-[(4-chlorophenyl)methyl]-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.53 
_cell.angle_gamma         90 
_cell.entry_id            6VGI 
_cell.length_a            214.418 
_cell.length_b            66.297 
_cell.length_c            109.43 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,N,O,P,Q,R,V,W 1 1 
B,C,D,I,J,K,L,M,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
#
_chem_comp.formula           'C27 H34 Cl N O2 S' 
_chem_comp.formula_weight    472.082 
_chem_comp.id                QY7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[3-(tert-butylsulfanyl)-1-[(4-chlorophenyl)methyl]-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C25 QY7 sing 277 n n 
C25 C16 QY7 sing 278 n n 
C25 C10 QY7 sing 279 n n 
C10 C1 QY7 doub 280 n y 
C10 C7 QY7 sing 281 n y 
C1 C4 QY7 sing 282 n y 
C7 C8 QY7 doub 283 n y 
C4 C11 QY7 doub 284 n y 
C8 C11 QY7 sing 285 n y 
C8 C12 QY7 sing 286 n y 
O30 C15 QY7 doub 287 n n 
C11 N28 QY7 sing 288 n y 
C18 C26 QY7 sing 289 n n 
C12 S31 QY7 sing 290 n n 
C12 C14 QY7 doub 291 n y 
S31 C27 QY7 sing 292 n n 
N28 C14 QY7 sing 293 n y 
N28 C23 QY7 sing 294 n n 
C15 C26 QY7 sing 295 n n 
C15 O29 QY7 sing 296 n n 
C14 C24 QY7 sing 297 n n 
C23 C9 QY7 sing 298 n n 
C26 C24 QY7 sing 299 n n 
C26 C19 QY7 sing 300 n n 
C20 C27 QY7 sing 301 n n 
C27 C22 QY7 sing 302 n n 
C27 C21 QY7 sing 303 n n 
C9 C3 QY7 doub 304 n y 
C9 C2 QY7 sing 305 n y 
C3 C6 QY7 sing 306 n y 
C2 C5 QY7 doub 307 n y 
C6 C13 QY7 doub 308 n y 
C5 C13 QY7 sing 309 n y 
C13 CL1 QY7 sing 310 n n 
C7 H1 QY7 sing 311 n n 
C6 H2 QY7 sing 312 n n 
C1 H3 QY7 sing 313 n n 
C5 H4 QY7 sing 314 n n 
C4 H5 QY7 sing 315 n n 
C3 H6 QY7 sing 316 n n 
C2 H7 QY7 sing 317 n n 
C16 H8 QY7 sing 318 n n 
C16 H9 QY7 sing 319 n n 
C16 H10 QY7 sing 320 n n 
C17 H11 QY7 sing 321 n n 
C17 H12 QY7 sing 322 n n 
C17 H13 QY7 sing 323 n n 
C18 H14 QY7 sing 324 n n 
C18 H15 QY7 sing 325 n n 
C18 H16 QY7 sing 326 n n 
C19 H17 QY7 sing 327 n n 
C19 H18 QY7 sing 328 n n 
C19 H19 QY7 sing 329 n n 
C20 H20 QY7 sing 330 n n 
C20 H21 QY7 sing 331 n n 
C20 H22 QY7 sing 332 n n 
C21 H23 QY7 sing 333 n n 
C21 H24 QY7 sing 334 n n 
C21 H25 QY7 sing 335 n n 
C22 H26 QY7 sing 336 n n 
C22 H27 QY7 sing 337 n n 
C22 H28 QY7 sing 338 n n 
C23 H29 QY7 sing 339 n n 
C23 H30 QY7 sing 340 n n 
C24 H31 QY7 sing 341 n n 
C24 H32 QY7 sing 342 n n 
C25 H33 QY7 sing 343 n n 
O29 H34 QY7 sing 344 n n 
#
_atom_sites.entry_id                     6VGI 
_atom_sites.fract_transf_matrix[1][1]    0.004664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000952 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 QY7 A 1 201 6 QY7 SX1 . 
H 3 SO4 A 1 202 5 SO4 SO4 . 
I 2 QY7 B 1 201 2 QY7 SX1 . 
J 2 QY7 B 1 202 4 QY7 SX1 . 
K 3 SO4 B 1 203 4 SO4 SO4 . 
L 2 QY7 C 1 201 3 QY7 SX1 . 
M 3 SO4 C 1 202 1 SO4 SO4 . 
N 2 QY7 E 1 201 1 QY7 SX1 . 
O 3 SO4 E 1 202 2 SO4 SO4 . 
P 2 QY7 F 1 201 5 QY7 SX1 . 
Q 3 SO4 F 1 202 3 SO4 SO4 . 
R 4 HOH A 1 301 3 HOH HOH . 
R 4 HOH A 2 302 10 HOH HOH . 
R 4 HOH A 3 303 23 HOH HOH . 
R 4 HOH A 4 304 24 HOH HOH . 
R 4 HOH A 5 305 28 HOH HOH . 
S 4 HOH B 1 301 6 HOH HOH . 
S 4 HOH B 2 302 5 HOH HOH . 
S 4 HOH B 3 303 27 HOH HOH . 
S 4 HOH B 4 304 26 HOH HOH . 
S 4 HOH B 5 305 15 HOH HOH . 
T 4 HOH C 1 301 25 HOH HOH . 
T 4 HOH C 2 302 9 HOH HOH . 
T 4 HOH C 3 303 7 HOH HOH . 
T 4 HOH C 4 304 14 HOH HOH . 
U 4 HOH D 1 201 20 HOH HOH . 
U 4 HOH D 2 202 2 HOH HOH . 
U 4 HOH D 3 203 4 HOH HOH . 
U 4 HOH D 4 204 18 HOH HOH . 
U 4 HOH D 5 205 22 HOH HOH . 
V 4 HOH E 1 301 8 HOH HOH . 
V 4 HOH E 2 302 12 HOH HOH . 
V 4 HOH E 3 303 16 HOH HOH . 
V 4 HOH E 4 304 1 HOH HOH . 
V 4 HOH E 5 305 13 HOH HOH . 
V 4 HOH E 6 306 17 HOH HOH . 
V 4 HOH E 7 307 19 HOH HOH . 
W 4 HOH F 1 301 11 HOH HOH . 
W 4 HOH F 2 302 21 HOH HOH . 
W 4 HOH F 3 303 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 QY7 . . . L 2 -26.378 4.901 17.316 1 59.34 ? C7 QY7 201 C 1 
HETATM 2 C C6 QY7 . . . L 2 -23.713 9.63 14.302 1 65.27 ? C6 QY7 201 C 1 
HETATM 3 C C1 QY7 . . . L 2 -24.139 4.847 18.25 1 56.94 ? C1 QY7 201 C 1 
HETATM 4 C C5 QY7 . . . L 2 -21.625 9.402 13.105 1 66.9 ? C5 QY7 201 C 1 
HETATM 5 C C4 QY7 . . . L 2 -23.578 5.185 17.014 1 55.98 ? C4 QY7 201 C 1 
HETATM 6 C C3 QY7 . . . L 2 -23.783 8.245 14.429 1 60.79 ? C3 QY7 201 C 1 
HETATM 7 C C2 QY7 . . . L 2 -21.695 8.014 13.233 1 63 ? C2 QY7 201 C 1 
HETATM 8 C C8 QY7 . . . L 2 -25.837 5.24 16.064 1 57.84 ? C8 QY7 201 C 1 
HETATM 9 C C9 QY7 . . . L 2 -22.777 7.438 13.898 1 61.53 ? C9 QY7 201 C 1 
HETATM 10 C C10 QY7 . . . L 2 -25.518 4.708 18.4 1 57.57 ? C10 QY7 201 C 1 
HETATM 11 C C11 QY7 . . . L 2 -24.454 5.374 15.94 1 57.91 ? C11 QY7 201 C 1 
HETATM 12 C C12 QY7 . . . L 2 -26.406 5.498 14.789 1 57.42 ? C12 QY7 201 C 1 
HETATM 13 C C13 QY7 . . . L 2 -22.632 10.208 13.638 1 68.42 ? C13 QY7 201 C 1 
HETATM 14 C C14 QY7 . . . L 2 -25.378 5.786 13.924 1 58.43 ? C14 QY7 201 C 1 
HETATM 15 C C15 QY7 . . . L 2 -24.039 4.367 11.221 1 62.32 ? C15 QY7 201 C 1 
HETATM 16 C C16 QY7 . . . L 2 -25.91 5.456 20.775 1 55.93 ? C16 QY7 201 C 1 
HETATM 17 C C17 QY7 . . . L 2 -25.568 3.005 20.253 1 57.77 ? C17 QY7 201 C 1 
HETATM 18 C C18 QY7 . . . L 2 -26.437 3.837 11.937 1 61.79 ? C18 QY7 201 C 1 
HETATM 19 C C19 QY7 . . . L 2 -25.984 5.443 10.114 1 60.98 ? C19 QY7 201 C 1 
HETATM 20 C C20 QY7 . . . L 2 -28.121 7.521 16.19 1 48.46 ? C20 QY7 201 C 1 
HETATM 21 C C21 QY7 . . . L 2 -27.675 8.066 13.78 1 48.69 ? C21 QY7 201 C 1 
HETATM 22 C C22 QY7 . . . L 2 -29.995 7.44 14.522 1 51.34 ? C22 QY7 201 C 1 
HETATM 23 C C23 QY7 . . . L 2 -22.897 5.947 14.06 1 59.6 ? C23 QY7 201 C 1 
HETATM 24 C C24 QY7 . . . L 2 -25.403 6.13 12.453 1 59.89 ? C24 QY7 201 C 1 
HETATM 25 C C25 QY7 . . . L 2 -26.104 4.348 19.724 1 55.57 ? C25 QY7 201 C 1 
HETATM 26 C C26 QY7 . . . L 2 -25.452 4.926 11.474 1 62 ? C26 QY7 201 C 1 
HETATM 27 C C27 QY7 . . . L 2 -28.498 7.205 14.741 1 50.22 ? C27 QY7 201 C 1 
HETATM 28 N N28 QY7 . . . L 2 -24.204 5.697 14.624 1 58.74 ? N28 QY7 201 C 1 
HETATM 29 O O29 QY7 . . . L 2 -23.039 5.065 11.086 1 63 ? O29 QY7 201 C 1 
HETATM 30 O O30 QY7 . . . L 2 -23.965 3.016 11.158 1 63.47 ? O30 QY7 201 C 1 
HETATM 31 S S31 QY7 . . . L 2 -28.109 5.465 14.413 1 53.16 ? S31 QY7 201 C 1 
HETATM 32 CL CL1 QY7 . . . L 2 -22.547 11.92 13.481 1 76.24 ? CL1 QY7 201 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#