data_6VGW # _model_server_result.job_id mogEKzr1M2BDG-XIMLT6oQ _model_server_result.datetime_utc '2025-03-06 02:09:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vgw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6VGW # _exptl.entry_id 6VGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.554 _cell.angle_gamma 90 _cell.entry_id 6VGW _cell.length_a 101.486 _cell.length_b 40.632 _cell.length_c 36.023 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 18 1_555 A N MSE 20 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 20 A MSE 19 1_555 A N ILE 21 A ILE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C SER 63 A SER 62 1_555 A N MSE 64 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 64 A MSE 63 1_555 A N VAL 65 A VAL 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C HIS 80 A HIS 79 1_555 A N MSE 81 A MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 81 A MSE 80 1_555 A N ILE 82 A ILE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C VAL 110 A VAL 109 1_555 A N MSE 111 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 111 A MSE 110 1_555 A N LEU 112 A LEU 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C VAL 126 A VAL 125 1_555 A N MSE 127 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 127 A MSE 126 1_555 A N HIS 128 A HIS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6VGW _atom_sites.fract_transf_matrix[1][1] 0.009854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002375 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 3 GOL GOL . F 3 GOL A 1 205 4 GOL GOL . G 4 HOH A 1 301 69 HOH HOH . G 4 HOH A 2 302 67 HOH HOH . G 4 HOH A 3 303 76 HOH HOH . G 4 HOH A 4 304 82 HOH HOH . G 4 HOH A 5 305 77 HOH HOH . G 4 HOH A 6 306 79 HOH HOH . G 4 HOH A 7 307 49 HOH HOH . G 4 HOH A 8 308 41 HOH HOH . G 4 HOH A 9 309 63 HOH HOH . G 4 HOH A 10 310 19 HOH HOH . G 4 HOH A 11 311 46 HOH HOH . G 4 HOH A 12 312 28 HOH HOH . G 4 HOH A 13 313 24 HOH HOH . G 4 HOH A 14 314 90 HOH HOH . G 4 HOH A 15 315 93 HOH HOH . G 4 HOH A 16 316 30 HOH HOH . G 4 HOH A 17 317 42 HOH HOH . G 4 HOH A 18 318 12 HOH HOH . G 4 HOH A 19 319 40 HOH HOH . G 4 HOH A 20 320 102 HOH HOH . G 4 HOH A 21 321 43 HOH HOH . G 4 HOH A 22 322 81 HOH HOH . G 4 HOH A 23 323 65 HOH HOH . G 4 HOH A 24 324 4 HOH HOH . G 4 HOH A 25 325 38 HOH HOH . G 4 HOH A 26 326 74 HOH HOH . G 4 HOH A 27 327 27 HOH HOH . G 4 HOH A 28 328 31 HOH HOH . G 4 HOH A 29 329 14 HOH HOH . G 4 HOH A 30 330 97 HOH HOH . G 4 HOH A 31 331 36 HOH HOH . G 4 HOH A 32 332 8 HOH HOH . G 4 HOH A 33 333 85 HOH HOH . G 4 HOH A 34 334 16 HOH HOH . G 4 HOH A 35 335 51 HOH HOH . G 4 HOH A 36 336 103 HOH HOH . G 4 HOH A 37 337 89 HOH HOH . G 4 HOH A 38 338 3 HOH HOH . G 4 HOH A 39 339 55 HOH HOH . G 4 HOH A 40 340 5 HOH HOH . G 4 HOH A 41 341 25 HOH HOH . G 4 HOH A 42 342 59 HOH HOH . G 4 HOH A 43 343 32 HOH HOH . G 4 HOH A 44 344 84 HOH HOH . G 4 HOH A 45 345 64 HOH HOH . G 4 HOH A 46 346 80 HOH HOH . G 4 HOH A 47 347 54 HOH HOH . G 4 HOH A 48 348 26 HOH HOH . G 4 HOH A 49 349 83 HOH HOH . G 4 HOH A 50 350 18 HOH HOH . G 4 HOH A 51 351 62 HOH HOH . G 4 HOH A 52 352 44 HOH HOH . G 4 HOH A 53 353 60 HOH HOH . G 4 HOH A 54 354 2 HOH HOH . G 4 HOH A 55 355 100 HOH HOH . G 4 HOH A 56 356 101 HOH HOH . G 4 HOH A 57 357 78 HOH HOH . G 4 HOH A 58 358 20 HOH HOH . G 4 HOH A 59 359 48 HOH HOH . G 4 HOH A 60 360 99 HOH HOH . G 4 HOH A 61 361 52 HOH HOH . G 4 HOH A 62 362 104 HOH HOH . G 4 HOH A 63 363 45 HOH HOH . G 4 HOH A 64 364 21 HOH HOH . G 4 HOH A 65 365 1 HOH HOH . G 4 HOH A 66 366 7 HOH HOH . G 4 HOH A 67 367 34 HOH HOH . G 4 HOH A 68 368 15 HOH HOH . G 4 HOH A 69 369 29 HOH HOH . G 4 HOH A 70 370 88 HOH HOH . G 4 HOH A 71 371 95 HOH HOH . G 4 HOH A 72 372 22 HOH HOH . G 4 HOH A 73 373 17 HOH HOH . G 4 HOH A 74 374 11 HOH HOH . G 4 HOH A 75 375 13 HOH HOH . G 4 HOH A 76 376 37 HOH HOH . G 4 HOH A 77 377 70 HOH HOH . G 4 HOH A 78 378 61 HOH HOH . G 4 HOH A 79 379 75 HOH HOH . G 4 HOH A 80 380 106 HOH HOH . G 4 HOH A 81 381 23 HOH HOH . G 4 HOH A 82 382 10 HOH HOH . G 4 HOH A 83 383 96 HOH HOH . G 4 HOH A 84 384 50 HOH HOH . G 4 HOH A 85 385 9 HOH HOH . G 4 HOH A 86 386 105 HOH HOH . G 4 HOH A 87 387 87 HOH HOH . G 4 HOH A 88 388 98 HOH HOH . G 4 HOH A 89 389 94 HOH HOH . G 4 HOH A 90 390 71 HOH HOH . G 4 HOH A 91 391 73 HOH HOH . G 4 HOH A 92 392 72 HOH HOH . G 4 HOH A 93 393 35 HOH HOH . G 4 HOH A 94 394 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 2.01 -8.605 0.376 1 28.04 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 3 1.234 -8.462 1.544 1 30.69 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 3 3.441 -8.072 0.699 1 29.05 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 3 4.054 -8.821 1.708 1 28.46 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 3 3.246 -6.598 1.115 1 30.2 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 3 4.516 -6.001 1.115 1 25.96 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #