data_6VGZ # _model_server_result.job_id oy1yGLGAkusAOYIuqHtN1Q _model_server_result.datetime_utc '2025-01-28 02:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6VGZ # _exptl.entry_id 6VGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 439.589 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-({[trans-4-(propan-2-yl)cyclohexyl]oxy}carbonyl)-L-leucinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VGZ _cell.length_a 76.201 _cell.length_b 91.726 _cell.length_c 101.586 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 155 A CYS 148 1_555 C C19 QZG . A QZG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale2 B SG CYS 155 B CYS 148 1_555 D C19 QZG . B QZG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? # _chem_comp.formula 'C23 H41 N3 O5' _chem_comp.formula_weight 439.589 _chem_comp.id QZG _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-({[trans-4-(propan-2-yl)cyclohexyl]oxy}carbonyl)-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 QZG sing 277 n n C16 N15 QZG sing 278 n n C17 C13 QZG sing 279 n n O20 C19 QZG sing 280 n n O21 C09 QZG doub 281 n n C28 C27 QZG sing 282 n n N15 C14 QZG sing 283 n n C19 C11 QZG sing 284 n n C11 C12 QZG sing 285 n n C11 N10 QZG sing 286 n n C13 C12 QZG sing 287 n n C13 C14 QZG sing 288 n n C24 C25 QZG sing 289 n n C24 C23 QZG sing 290 n n C25 C26 QZG sing 291 n n C14 O18 QZG doub 292 n n C09 N10 QZG sing 293 n n C09 C04 QZG sing 294 n n C26 C27 QZG sing 295 n n C26 C30 QZG sing 296 n n C27 C29 QZG sing 297 n n O22 C23 QZG sing 298 n n O22 C02 QZG sing 299 n n N03 C02 QZG sing 300 n n N03 C04 QZG sing 301 n n C23 C31 QZG sing 302 n n C02 O01 QZG doub 303 n n C04 C05 QZG sing 304 n n C05 C06 QZG sing 305 n n C31 C30 QZG sing 306 n n C07 C06 QZG sing 307 n n C06 C08 QZG sing 308 n n C04 H1 QZG sing 309 n n C05 H2 QZG sing 310 n n C05 H3 QZG sing 311 n n C06 H4 QZG sing 312 n n C07 H5 QZG sing 313 n n C07 H6 QZG sing 314 n n C07 H7 QZG sing 315 n n C08 H8 QZG sing 316 n n C08 H9 QZG sing 317 n n C08 H10 QZG sing 318 n n C11 H11 QZG sing 319 n n C12 H12 QZG sing 320 n n C12 H13 QZG sing 321 n n C13 H14 QZG sing 322 n n C16 H15 QZG sing 323 n n C16 H16 QZG sing 324 n n C17 H17 QZG sing 325 n n C17 H18 QZG sing 326 n n C19 H19 QZG sing 327 n n C19 H20 QZG sing 328 n n C23 H21 QZG sing 329 n n C24 H22 QZG sing 330 n n C24 H23 QZG sing 331 n n C25 H24 QZG sing 332 n n C25 H25 QZG sing 333 n n C26 H26 QZG sing 334 n n C27 H27 QZG sing 335 n n C28 H28 QZG sing 336 n n C28 H29 QZG sing 337 n n C28 H30 QZG sing 338 n n C29 H31 QZG sing 339 n n C29 H32 QZG sing 340 n n C29 H33 QZG sing 341 n n C30 H34 QZG sing 342 n n C30 H35 QZG sing 343 n n C31 H36 QZG sing 344 n n C31 H37 QZG sing 345 n n N03 H38 QZG sing 346 n n N10 H39 QZG sing 347 n n N15 H40 QZG sing 348 n n O20 H41 QZG sing 349 n n # _atom_sites.entry_id 6VGZ _atom_sites.fract_transf_matrix[1][1] 0.013123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QZG A 1 401 1 QZG A47 . D 2 QZG B 1 401 2 QZG A47 . E 3 HOH A 1 501 63 HOH HOH . E 3 HOH A 2 502 104 HOH HOH . E 3 HOH A 3 503 47 HOH HOH . E 3 HOH A 4 504 79 HOH HOH . E 3 HOH A 5 505 81 HOH HOH . E 3 HOH A 6 506 22 HOH HOH . E 3 HOH A 7 507 27 HOH HOH . E 3 HOH A 8 508 171 HOH HOH . E 3 HOH A 9 509 153 HOH HOH . E 3 HOH A 10 510 82 HOH HOH . E 3 HOH A 11 511 12 HOH HOH . E 3 HOH A 12 512 152 HOH HOH . E 3 HOH A 13 513 100 HOH HOH . E 3 HOH A 14 514 139 HOH HOH . E 3 HOH A 15 515 162 HOH HOH . E 3 HOH A 16 516 148 HOH HOH . E 3 HOH A 17 517 40 HOH HOH . E 3 HOH A 18 518 73 HOH HOH . E 3 HOH A 19 519 59 HOH HOH . E 3 HOH A 20 520 85 HOH HOH . E 3 HOH A 21 521 25 HOH HOH . E 3 HOH A 22 522 53 HOH HOH . E 3 HOH A 23 523 16 HOH HOH . E 3 HOH A 24 524 48 HOH HOH . E 3 HOH A 25 525 6 HOH HOH . E 3 HOH A 26 526 11 HOH HOH . E 3 HOH A 27 527 142 HOH HOH . E 3 HOH A 28 528 8 HOH HOH . E 3 HOH A 29 529 13 HOH HOH . E 3 HOH A 30 530 97 HOH HOH . E 3 HOH A 31 531 20 HOH HOH . E 3 HOH A 32 532 28 HOH HOH . E 3 HOH A 33 533 130 HOH HOH . E 3 HOH A 34 534 144 HOH HOH . E 3 HOH A 35 535 70 HOH HOH . E 3 HOH A 36 536 83 HOH HOH . E 3 HOH A 37 537 46 HOH HOH . E 3 HOH A 38 538 107 HOH HOH . E 3 HOH A 39 539 118 HOH HOH . E 3 HOH A 40 540 138 HOH HOH . E 3 HOH A 41 541 124 HOH HOH . E 3 HOH A 42 542 120 HOH HOH . E 3 HOH A 43 543 163 HOH HOH . E 3 HOH A 44 544 77 HOH HOH . E 3 HOH A 45 545 99 HOH HOH . E 3 HOH A 46 546 132 HOH HOH . E 3 HOH A 47 547 24 HOH HOH . E 3 HOH A 48 548 54 HOH HOH . E 3 HOH A 49 549 147 HOH HOH . E 3 HOH A 50 550 35 HOH HOH . E 3 HOH A 51 551 60 HOH HOH . E 3 HOH A 52 552 64 HOH HOH . E 3 HOH A 53 553 44 HOH HOH . E 3 HOH A 54 554 151 HOH HOH . F 3 HOH B 1 501 14 HOH HOH . F 3 HOH B 2 502 129 HOH HOH . F 3 HOH B 3 503 93 HOH HOH . F 3 HOH B 4 504 155 HOH HOH . F 3 HOH B 5 505 170 HOH HOH . F 3 HOH B 6 506 67 HOH HOH . F 3 HOH B 7 507 105 HOH HOH . F 3 HOH B 8 508 94 HOH HOH . F 3 HOH B 9 509 36 HOH HOH . F 3 HOH B 10 510 127 HOH HOH . F 3 HOH B 11 511 7 HOH HOH . F 3 HOH B 12 512 19 HOH HOH . F 3 HOH B 13 513 110 HOH HOH . F 3 HOH B 14 514 9 HOH HOH . F 3 HOH B 15 515 49 HOH HOH . F 3 HOH B 16 516 80 HOH HOH . F 3 HOH B 17 517 78 HOH HOH . F 3 HOH B 18 518 58 HOH HOH . F 3 HOH B 19 519 56 HOH HOH . F 3 HOH B 20 520 62 HOH HOH . F 3 HOH B 21 521 135 HOH HOH . F 3 HOH B 22 522 156 HOH HOH . F 3 HOH B 23 523 95 HOH HOH . F 3 HOH B 24 524 43 HOH HOH . F 3 HOH B 25 525 96 HOH HOH . F 3 HOH B 26 526 146 HOH HOH . F 3 HOH B 27 527 21 HOH HOH . F 3 HOH B 28 528 145 HOH HOH . F 3 HOH B 29 529 5 HOH HOH . F 3 HOH B 30 530 160 HOH HOH . F 3 HOH B 31 531 109 HOH HOH . F 3 HOH B 32 532 3 HOH HOH . F 3 HOH B 33 533 122 HOH HOH . F 3 HOH B 34 534 72 HOH HOH . F 3 HOH B 35 535 114 HOH HOH . F 3 HOH B 36 536 51 HOH HOH . F 3 HOH B 37 537 136 HOH HOH . F 3 HOH B 38 538 158 HOH HOH . F 3 HOH B 39 539 50 HOH HOH . F 3 HOH B 40 540 4 HOH HOH . F 3 HOH B 41 541 116 HOH HOH . F 3 HOH B 42 542 159 HOH HOH . F 3 HOH B 43 543 103 HOH HOH . F 3 HOH B 44 544 169 HOH HOH . F 3 HOH B 45 545 34 HOH HOH . F 3 HOH B 46 546 134 HOH HOH . F 3 HOH B 47 547 57 HOH HOH . F 3 HOH B 48 548 101 HOH HOH . F 3 HOH B 49 549 39 HOH HOH . F 3 HOH B 50 550 149 HOH HOH . F 3 HOH B 51 551 126 HOH HOH . F 3 HOH B 52 552 133 HOH HOH . F 3 HOH B 53 553 84 HOH HOH . F 3 HOH B 54 554 108 HOH HOH . F 3 HOH B 55 555 41 HOH HOH . F 3 HOH B 56 556 55 HOH HOH . F 3 HOH B 57 557 68 HOH HOH . F 3 HOH B 58 558 115 HOH HOH . F 3 HOH B 59 559 143 HOH HOH . F 3 HOH B 60 560 92 HOH HOH . F 3 HOH B 61 561 23 HOH HOH . F 3 HOH B 62 562 76 HOH HOH . F 3 HOH B 63 563 17 HOH HOH . F 3 HOH B 64 564 88 HOH HOH . F 3 HOH B 65 565 10 HOH HOH . F 3 HOH B 66 566 61 HOH HOH . F 3 HOH B 67 567 161 HOH HOH . F 3 HOH B 68 568 66 HOH HOH . F 3 HOH B 69 569 87 HOH HOH . F 3 HOH B 70 570 121 HOH HOH . F 3 HOH B 71 571 74 HOH HOH . F 3 HOH B 72 572 42 HOH HOH . F 3 HOH B 73 573 29 HOH HOH . F 3 HOH B 74 574 2 HOH HOH . F 3 HOH B 75 575 98 HOH HOH . F 3 HOH B 76 576 32 HOH HOH . F 3 HOH B 77 577 137 HOH HOH . F 3 HOH B 78 578 45 HOH HOH . F 3 HOH B 79 579 123 HOH HOH . F 3 HOH B 80 580 37 HOH HOH . F 3 HOH B 81 581 31 HOH HOH . F 3 HOH B 82 582 15 HOH HOH . F 3 HOH B 83 583 30 HOH HOH . F 3 HOH B 84 584 141 HOH HOH . F 3 HOH B 85 585 119 HOH HOH . F 3 HOH B 86 586 38 HOH HOH . F 3 HOH B 87 587 113 HOH HOH . F 3 HOH B 88 588 117 HOH HOH . F 3 HOH B 89 589 71 HOH HOH . F 3 HOH B 90 590 91 HOH HOH . F 3 HOH B 91 591 65 HOH HOH . F 3 HOH B 92 592 111 HOH HOH . F 3 HOH B 93 593 125 HOH HOH . F 3 HOH B 94 594 26 HOH HOH . F 3 HOH B 95 595 106 HOH HOH . F 3 HOH B 96 596 150 HOH HOH . F 3 HOH B 97 597 18 HOH HOH . F 3 HOH B 98 598 112 HOH HOH . F 3 HOH B 99 599 131 HOH HOH . F 3 HOH B 100 600 1 HOH HOH . F 3 HOH B 101 601 154 HOH HOH . F 3 HOH B 102 602 89 HOH HOH . F 3 HOH B 103 603 52 HOH HOH . F 3 HOH B 104 604 86 HOH HOH . F 3 HOH B 105 605 69 HOH HOH . F 3 HOH B 106 606 90 HOH HOH . F 3 HOH B 107 607 128 HOH HOH . F 3 HOH B 108 608 165 HOH HOH . F 3 HOH B 109 609 33 HOH HOH . F 3 HOH B 110 610 157 HOH HOH . F 3 HOH B 111 611 102 HOH HOH . F 3 HOH B 112 612 75 HOH HOH . F 3 HOH B 113 613 167 HOH HOH . F 3 HOH B 114 614 164 HOH HOH . F 3 HOH B 115 615 140 HOH HOH . F 3 HOH B 116 616 168 HOH HOH . F 3 HOH B 117 617 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 QZG . . . C 2 -13.25 -12.202 -8.457 1 42.08 ? C02 QZG 401 A 1 HETATM 2 C C04 QZG . . . C 2 -12.324 -10.059 -8.435 1 37.34 ? C04 QZG 401 A 1 HETATM 3 C C05 QZG . . . C 2 -10.938 -9.408 -8.391 1 40.27 ? C05 QZG 401 A 1 HETATM 4 C C06 QZG . . . C 2 -9.875 -9.989 -7.413 1 48.02 ? C06 QZG 401 A 1 HETATM 5 C C07 QZG . . . C 2 -8.6 -9.299 -7.443 1 34.01 ? C07 QZG 401 A 1 HETATM 6 C C08 QZG . . . C 2 -10.328 -10.108 -6.063 1 42.61 ? C08 QZG 401 A 1 HETATM 7 C C09 QZG . . . C 2 -13.25 -9.377 -9.478 1 35.51 ? C09 QZG 401 A 1 HETATM 8 C C11 QZG . . . C 2 -15.079 -7.891 -10.041 1 33.33 ? C11 QZG 401 A 1 HETATM 9 C C12 QZG . . . C 2 -16.622 -8.362 -9.788 1 28.51 ? C12 QZG 401 A 1 HETATM 10 C C13 QZG . . . C 2 -16.819 -9.754 -9.86 1 27.28 ? C13 QZG 401 A 1 HETATM 11 C C14 QZG . . . C 2 -18.153 -10.039 -9.515 1 26.48 ? C14 QZG 401 A 1 HETATM 12 C C16 QZG . . . C 2 -17.851 -11.076 -11.374 1 28.8 ? C16 QZG 401 A 1 HETATM 13 C C17 QZG . . . C 2 -16.744 -10.176 -11.194 1 27.32 ? C17 QZG 401 A 1 HETATM 14 C C19 QZG . . . C 2 -14.701 -6.361 -10.071 1 28.27 ? C19 QZG 401 A 1 HETATM 15 C C23 QZG . . . C 2 -13.984 -14.364 -8.592 1 43.64 ? C23 QZG 401 A 1 HETATM 16 C C24 QZG . . . C 2 -14.854 -14.591 -9.778 1 39.13 ? C24 QZG 401 A 1 HETATM 17 C C25 QZG . . . C 2 -15.792 -15.672 -9.744 1 53.19 ? C25 QZG 401 A 1 HETATM 18 C C26 QZG . . . C 2 -15.193 -17.007 -9.308 1 55.99 ? C26 QZG 401 A 1 HETATM 19 C C27 QZG . . . C 2 -16.207 -18.15 -9.178 1 51.11 ? C27 QZG 401 A 1 HETATM 20 C C28 QZG . . . C 2 -16.941 -18.431 -10.42 1 47.89 ? C28 QZG 401 A 1 HETATM 21 C C29 QZG . . . C 2 -15.645 -19.43 -8.676 1 57.53 ? C29 QZG 401 A 1 HETATM 22 C C30 QZG . . . C 2 -14.336 -16.786 -8.088 1 45.57 ? C30 QZG 401 A 1 HETATM 23 C C31 QZG . . . C 2 -13.413 -15.632 -8.185 1 43.78 ? C31 QZG 401 A 1 HETATM 24 N N03 QZG . . . C 2 -12.236 -11.384 -8.744 1 36.77 ? N03 QZG 401 A 1 HETATM 25 N N10 QZG . . . C 2 -14.189 -8.514 -9.099 1 32.14 ? N10 QZG 401 A 1 HETATM 26 N N15 QZG . . . C 2 -18.649 -10.816 -10.381 1 34.6 ? N15 QZG 401 A 1 HETATM 27 O O01 QZG . . . C 2 -14.212 -11.837 -7.94 1 33.41 ? O01 QZG 401 A 1 HETATM 28 O O18 QZG . . . C 2 -18.712 -9.792 -8.58 1 30.3 ? O18 QZG 401 A 1 HETATM 29 O O20 QZG . . . C 2 -15.594 -5.801 -11.021 1 40.14 ? O20 QZG 401 A 1 HETATM 30 O O21 QZG . . . C 2 -13.177 -9.662 -10.575 1 38.63 ? O21 QZG 401 A 1 HETATM 31 O O22 QZG . . . C 2 -13.057 -13.462 -8.802 1 39.71 ? O22 QZG 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #