data_6VH3 # _model_server_result.job_id gGe0QE85HZz2XSdeCEuJ8A _model_server_result.datetime_utc '2024-11-05 11:29:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6VH3 # _exptl.entry_id 6VH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VH3 _cell.length_a 75.629 _cell.length_b 90.96 _cell.length_c 100.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 155 A CYS 148 1_555 C C26 QYS . A QYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale2 B SG CYS 155 B CYS 148 1_555 D C26 QYS . B QYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? # _chem_comp.formula 'C21 H35 F2 N3 O8 S' _chem_comp.formula_weight 527.58 _chem_comp.id QYS _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 QYS sing 277 n n C23 N22 QYS sing 278 n n C24 C20 QYS sing 279 n n O27 C26 QYS sing 280 n n O28 C16 QYS doub 281 n n C26 C18 QYS sing 282 n n C18 C19 QYS sing 283 n n C18 N17 QYS sing 284 n n N22 C21 QYS sing 285 n n C20 C19 QYS sing 286 n n C20 C21 QYS sing 287 n n C16 N17 QYS sing 288 n n C16 C11 QYS sing 289 n n C21 O25 QYS doub 290 n n O08 C09 QYS sing 291 n n O08 C07 QYS sing 292 n n C12 C11 QYS sing 293 n n C12 C13 QYS sing 294 n n N10 C09 QYS sing 295 n n N10 C11 QYS sing 296 n n C09 O29 QYS doub 297 n n C07 C06 QYS sing 298 n n C14 C13 QYS sing 299 n n C13 C15 QYS sing 300 n n C30 C06 QYS sing 301 n n C30 C31 QYS sing 302 n n C06 C05 QYS sing 303 n n C31 C02 QYS sing 304 n n C05 C04 QYS sing 305 n n C02 F01 QYS sing 306 n n C02 C04 QYS sing 307 n n C02 F03 QYS sing 308 n n C04 H1 QYS sing 309 n n C04 H2 QYS sing 310 n n C05 H3 QYS sing 311 n n C05 H4 QYS sing 312 n n C06 H5 QYS sing 313 n n C07 H6 QYS sing 314 n n C07 H7 QYS sing 315 n n C11 H8 QYS sing 316 n n C12 H9 QYS sing 317 n n C12 H10 QYS sing 318 n n C13 H11 QYS sing 319 n n C14 H12 QYS sing 320 n n C14 H13 QYS sing 321 n n C14 H14 QYS sing 322 n n C15 H15 QYS sing 323 n n C15 H16 QYS sing 324 n n C15 H17 QYS sing 325 n n C18 H18 QYS sing 326 n n C19 H19 QYS sing 327 n n C19 H20 QYS sing 328 n n C20 H21 QYS sing 329 n n C23 H22 QYS sing 330 n n C23 H23 QYS sing 331 n n C24 H24 QYS sing 332 n n C24 H25 QYS sing 333 n n C26 H26 QYS sing 334 n n C30 H28 QYS sing 335 n n C30 H29 QYS sing 336 n n C31 H30 QYS sing 337 n n C31 H31 QYS sing 338 n n N10 H32 QYS sing 339 n n N17 H33 QYS sing 340 n n N22 H34 QYS sing 341 n n O27 H35 QYS sing 342 n n C26 S1 QYS sing 343 n n S1 O1 QYS doub 344 n n S1 O2 QYS doub 345 n n S1 O3 QYS sing 346 n n O3 H36 QYS sing 347 n n # _atom_sites.entry_id 6VH3 _atom_sites.fract_transf_matrix[1][1] 0.013222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QYS A 1 401 1 QYS A48 . D 2 QYS B 1 401 2 QYS A48 . E 3 HOH A 1 501 93 HOH HOH . E 3 HOH A 2 502 143 HOH HOH . E 3 HOH A 3 503 52 HOH HOH . E 3 HOH A 4 504 64 HOH HOH . E 3 HOH A 5 505 126 HOH HOH . E 3 HOH A 6 506 153 HOH HOH . E 3 HOH A 7 507 30 HOH HOH . E 3 HOH A 8 508 33 HOH HOH . E 3 HOH A 9 509 116 HOH HOH . E 3 HOH A 10 510 107 HOH HOH . E 3 HOH A 11 511 96 HOH HOH . E 3 HOH A 12 512 105 HOH HOH . E 3 HOH A 13 513 70 HOH HOH . E 3 HOH A 14 514 90 HOH HOH . E 3 HOH A 15 515 124 HOH HOH . E 3 HOH A 16 516 71 HOH HOH . E 3 HOH A 17 517 18 HOH HOH . E 3 HOH A 18 518 135 HOH HOH . E 3 HOH A 19 519 35 HOH HOH . E 3 HOH A 20 520 17 HOH HOH . E 3 HOH A 21 521 145 HOH HOH . E 3 HOH A 22 522 103 HOH HOH . E 3 HOH A 23 523 89 HOH HOH . E 3 HOH A 24 524 138 HOH HOH . E 3 HOH A 25 525 38 HOH HOH . E 3 HOH A 26 526 44 HOH HOH . E 3 HOH A 27 527 104 HOH HOH . E 3 HOH A 28 528 10 HOH HOH . E 3 HOH A 29 529 6 HOH HOH . E 3 HOH A 30 530 139 HOH HOH . E 3 HOH A 31 531 61 HOH HOH . E 3 HOH A 32 532 130 HOH HOH . E 3 HOH A 33 533 22 HOH HOH . E 3 HOH A 34 534 166 HOH HOH . E 3 HOH A 35 535 74 HOH HOH . E 3 HOH A 36 536 167 HOH HOH . E 3 HOH A 37 537 15 HOH HOH . E 3 HOH A 38 538 50 HOH HOH . E 3 HOH A 39 539 101 HOH HOH . E 3 HOH A 40 540 73 HOH HOH . E 3 HOH A 41 541 152 HOH HOH . E 3 HOH A 42 542 78 HOH HOH . E 3 HOH A 43 543 123 HOH HOH . E 3 HOH A 44 544 99 HOH HOH . E 3 HOH A 45 545 8 HOH HOH . E 3 HOH A 46 546 40 HOH HOH . E 3 HOH A 47 547 67 HOH HOH . E 3 HOH A 48 548 119 HOH HOH . E 3 HOH A 49 549 4 HOH HOH . E 3 HOH A 50 550 2 HOH HOH . E 3 HOH A 51 551 165 HOH HOH . E 3 HOH A 52 552 131 HOH HOH . E 3 HOH A 53 553 114 HOH HOH . E 3 HOH A 54 554 98 HOH HOH . E 3 HOH A 55 555 164 HOH HOH . E 3 HOH A 56 556 154 HOH HOH . E 3 HOH A 57 557 24 HOH HOH . E 3 HOH A 58 558 65 HOH HOH . E 3 HOH A 59 559 118 HOH HOH . E 3 HOH A 60 560 75 HOH HOH . E 3 HOH A 61 561 159 HOH HOH . E 3 HOH A 62 562 55 HOH HOH . E 3 HOH A 63 563 161 HOH HOH . E 3 HOH A 64 564 27 HOH HOH . E 3 HOH A 65 565 155 HOH HOH . E 3 HOH A 66 566 86 HOH HOH . E 3 HOH A 67 567 111 HOH HOH . E 3 HOH A 68 568 144 HOH HOH . E 3 HOH A 69 569 117 HOH HOH . E 3 HOH A 70 570 3 HOH HOH . E 3 HOH A 71 571 160 HOH HOH . E 3 HOH A 72 572 58 HOH HOH . E 3 HOH A 73 573 25 HOH HOH . E 3 HOH A 74 574 34 HOH HOH . E 3 HOH A 75 575 175 HOH HOH . E 3 HOH A 76 576 146 HOH HOH . E 3 HOH A 77 577 170 HOH HOH . E 3 HOH A 78 578 82 HOH HOH . E 3 HOH A 79 579 173 HOH HOH . E 3 HOH A 80 580 171 HOH HOH . F 3 HOH B 1 501 49 HOH HOH . F 3 HOH B 2 502 84 HOH HOH . F 3 HOH B 3 503 148 HOH HOH . F 3 HOH B 4 504 32 HOH HOH . F 3 HOH B 5 505 122 HOH HOH . F 3 HOH B 6 506 162 HOH HOH . F 3 HOH B 7 507 81 HOH HOH . F 3 HOH B 8 508 23 HOH HOH . F 3 HOH B 9 509 36 HOH HOH . F 3 HOH B 10 510 51 HOH HOH . F 3 HOH B 11 511 136 HOH HOH . F 3 HOH B 12 512 31 HOH HOH . F 3 HOH B 13 513 19 HOH HOH . F 3 HOH B 14 514 1 HOH HOH . F 3 HOH B 15 515 142 HOH HOH . F 3 HOH B 16 516 147 HOH HOH . F 3 HOH B 17 517 43 HOH HOH . F 3 HOH B 18 518 68 HOH HOH . F 3 HOH B 19 519 106 HOH HOH . F 3 HOH B 20 520 45 HOH HOH . F 3 HOH B 21 521 28 HOH HOH . F 3 HOH B 22 522 21 HOH HOH . F 3 HOH B 23 523 109 HOH HOH . F 3 HOH B 24 524 97 HOH HOH . F 3 HOH B 25 525 163 HOH HOH . F 3 HOH B 26 526 115 HOH HOH . F 3 HOH B 27 527 140 HOH HOH . F 3 HOH B 28 528 79 HOH HOH . F 3 HOH B 29 529 5 HOH HOH . F 3 HOH B 30 530 95 HOH HOH . F 3 HOH B 31 531 41 HOH HOH . F 3 HOH B 32 532 127 HOH HOH . F 3 HOH B 33 533 88 HOH HOH . F 3 HOH B 34 534 80 HOH HOH . F 3 HOH B 35 535 39 HOH HOH . F 3 HOH B 36 536 53 HOH HOH . F 3 HOH B 37 537 11 HOH HOH . F 3 HOH B 38 538 72 HOH HOH . F 3 HOH B 39 539 137 HOH HOH . F 3 HOH B 40 540 76 HOH HOH . F 3 HOH B 41 541 16 HOH HOH . F 3 HOH B 42 542 112 HOH HOH . F 3 HOH B 43 543 42 HOH HOH . F 3 HOH B 44 544 134 HOH HOH . F 3 HOH B 45 545 150 HOH HOH . F 3 HOH B 46 546 13 HOH HOH . F 3 HOH B 47 547 60 HOH HOH . F 3 HOH B 48 548 57 HOH HOH . F 3 HOH B 49 549 125 HOH HOH . F 3 HOH B 50 550 66 HOH HOH . F 3 HOH B 51 551 157 HOH HOH . F 3 HOH B 52 552 77 HOH HOH . F 3 HOH B 53 553 129 HOH HOH . F 3 HOH B 54 554 121 HOH HOH . F 3 HOH B 55 555 12 HOH HOH . F 3 HOH B 56 556 26 HOH HOH . F 3 HOH B 57 557 48 HOH HOH . F 3 HOH B 58 558 156 HOH HOH . F 3 HOH B 59 559 120 HOH HOH . F 3 HOH B 60 560 20 HOH HOH . F 3 HOH B 61 561 158 HOH HOH . F 3 HOH B 62 562 46 HOH HOH . F 3 HOH B 63 563 100 HOH HOH . F 3 HOH B 64 564 14 HOH HOH . F 3 HOH B 65 565 102 HOH HOH . F 3 HOH B 66 566 128 HOH HOH . F 3 HOH B 67 567 94 HOH HOH . F 3 HOH B 68 568 132 HOH HOH . F 3 HOH B 69 569 141 HOH HOH . F 3 HOH B 70 570 56 HOH HOH . F 3 HOH B 71 571 69 HOH HOH . F 3 HOH B 72 572 37 HOH HOH . F 3 HOH B 73 573 29 HOH HOH . F 3 HOH B 74 574 54 HOH HOH . F 3 HOH B 75 575 91 HOH HOH . F 3 HOH B 76 576 63 HOH HOH . F 3 HOH B 77 577 108 HOH HOH . F 3 HOH B 78 578 149 HOH HOH . F 3 HOH B 79 579 169 HOH HOH . F 3 HOH B 80 580 7 HOH HOH . F 3 HOH B 81 581 85 HOH HOH . F 3 HOH B 82 582 59 HOH HOH . F 3 HOH B 83 583 168 HOH HOH . F 3 HOH B 84 584 62 HOH HOH . F 3 HOH B 85 585 47 HOH HOH . F 3 HOH B 86 586 92 HOH HOH . F 3 HOH B 87 587 151 HOH HOH . F 3 HOH B 88 588 87 HOH HOH . F 3 HOH B 89 589 83 HOH HOH . F 3 HOH B 90 590 133 HOH HOH . F 3 HOH B 91 591 110 HOH HOH . F 3 HOH B 92 592 9 HOH HOH . F 3 HOH B 93 593 174 HOH HOH . F 3 HOH B 94 594 172 HOH HOH . F 3 HOH B 95 595 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 QYS . . . D 2 15.267 -0.557 1.416 1 75.23 ? C02 QYS 401 B 1 HETATM 2 C C04 QYS . . . D 2 15.317 0.471 0.273 1 71.17 ? C04 QYS 401 B 1 HETATM 3 C C05 QYS . . . D 2 15.554 1.834 0.832 1 59.95 ? C05 QYS 401 B 1 HETATM 4 C C06 QYS . . . D 2 16.948 1.915 1.509 1 72.23 ? C06 QYS 401 B 1 HETATM 5 C C07 QYS . . . D 2 17.253 3.377 1.875 1 63.57 ? C07 QYS 401 B 1 HETATM 6 C C09 QYS . . . D 2 18.965 4.477 0.627 1 38.26 ? C09 QYS 401 B 1 HETATM 7 C C11 QYS . . . D 2 19.094 6.647 -0.629 1 31.76 ? C11 QYS 401 B 1 HETATM 8 C C12 QYS . . . D 2 18.288 7.893 -0.966 1 33.06 ? C12 QYS 401 B 1 HETATM 9 C C13 QYS . . . D 2 17.143 7.741 -1.955 1 34.43 ? C13 QYS 401 B 1 HETATM 10 C C14 QYS . . . D 2 16.629 9.055 -2.382 1 40.74 ? C14 QYS 401 B 1 HETATM 11 C C15 QYS . . . D 2 17.512 6.987 -3.188 1 39.91 ? C15 QYS 401 B 1 HETATM 12 C C16 QYS . . . D 2 20.427 7.101 0.096 1 34.83 ? C16 QYS 401 B 1 HETATM 13 C C18 QYS . . . D 2 22.804 7.443 0.166 1 31.2 ? C18 QYS 401 B 1 HETATM 14 C C19 QYS . . . D 2 23.836 6.226 0.155 1 32.33 ? C19 QYS 401 B 1 HETATM 15 C C20 QYS . . . D 2 23.34 5.065 1.02 1 36.3 ? C20 QYS 401 B 1 HETATM 16 C C21 QYS . . . D 2 24.256 3.811 0.979 1 36.93 ? C21 QYS 401 B 1 HETATM 17 C C23 QYS . . . D 2 23.523 3.941 3.2 1 38.36 ? C23 QYS 401 B 1 HETATM 18 C C24 QYS . . . D 2 23.256 5.335 2.553 1 35 ? C24 QYS 401 B 1 HETATM 19 C C26 QYS . . . D 2 23.34 8.778 -0.523 1 32.65 ? C26 QYS 401 B 1 HETATM 20 C C30 QYS . . . D 2 17.024 0.89 2.709 1 59.64 ? C30 QYS 401 B 1 HETATM 21 C C31 QYS . . . D 2 16.594 -0.545 2.305 1 50.8 ? C31 QYS 401 B 1 HETATM 22 F F01 QYS . . . D 2 14.999 -1.784 0.902 1 78.26 ? F01 QYS 401 B 1 HETATM 23 F F03 QYS . . . D 2 14.185 -0.29 2.188 1 77.73 ? F03 QYS 401 B 1 HETATM 24 N N10 QYS . . . D 2 18.33 5.662 0.182 1 38.36 ? N10 QYS 401 B 1 HETATM 25 N N17 QYS . . . D 2 21.617 7.046 -0.486 1 28.17 ? N17 QYS 401 B 1 HETATM 26 N N22 QYS . . . D 2 24.332 3.235 2.174 1 31.69 ? N22 QYS 401 B 1 HETATM 27 O O08 QYS . . . D 2 18.562 3.771 1.717 1 42.65 ? O08 QYS 401 B 1 HETATM 28 O O25 QYS . . . D 2 24.808 3.445 -0.072 1 33.21 ? O25 QYS 401 B 1 HETATM 29 O O27 QYS . . . D 2 24.536 9.119 0.124 1 40.87 ? O27 QYS 401 B 1 HETATM 30 O O28 QYS . . . D 2 20.372 7.513 1.263 1 30.92 ? O28 QYS 401 B 1 HETATM 31 O O29 QYS . . . D 2 19.968 4.054 0.074 1 34.97 ? O29 QYS 401 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #