data_6VI7
#
_model_server_result.job_id            UHk6R5E1GVZrCpQ6d6G_bQ 
_model_server_result.datetime_utc      '2025-01-11 17:56:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    6VI7 
#
_exptl.entry_id    6VI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VI7 
_cell.length_a            58.04 
_cell.length_b            58.04 
_cell.length_c            231.58 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 58.04 100.528229 38.596667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc9 B O11 3HA . A 3HA 201 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc10 B N10 3HA . A 3HA 201 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 352 n n 
C C2 TRS sing 353 n n 
C C3 TRS sing 354 n n 
C N TRS sing 355 n n 
C1 O1 TRS sing 356 n n 
C1 H11 TRS sing 357 n n 
C1 H12 TRS sing 358 n n 
C2 O2 TRS sing 359 n n 
C2 H21 TRS sing 360 n n 
C2 H22 TRS sing 361 n n 
C3 O3 TRS sing 362 n n 
C3 H31 TRS sing 363 n n 
C3 H32 TRS sing 364 n n 
N HN1 TRS sing 365 n n 
N HN2 TRS sing 366 n n 
N HN3 TRS sing 367 n n 
O1 HO1 TRS sing 368 n n 
O2 HO2 TRS sing 369 n n 
O3 HO3 TRS sing 370 n n 
#
_atom_sites.entry_id                     6VI7 
_atom_sites.fract_transf_matrix[1][1]    0.017229 
_atom_sites.fract_transf_matrix[1][2]    0.009947 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3HA A 1 201 201 3HA 3HA . 
C 3 FE2 A 1 202 202 FE2 FE2 . 
D 3 FE2 A 1 203 203 FE2 FE2 . 
E 4 TRS A 1 204 204 TRS TRS . 
F 5 HOH A 1 301 301 HOH HOH . 
F 5 HOH A 2 302 302 HOH HOH . 
F 5 HOH A 3 303 303 HOH HOH . 
F 5 HOH A 4 304 304 HOH HOH . 
F 5 HOH A 5 305 305 HOH HOH . 
F 5 HOH A 6 306 306 HOH HOH . 
F 5 HOH A 7 307 307 HOH HOH . 
F 5 HOH A 8 308 308 HOH HOH . 
F 5 HOH A 9 309 309 HOH HOH . 
F 5 HOH A 10 310 310 HOH HOH . 
F 5 HOH A 11 311 311 HOH HOH . 
F 5 HOH A 12 312 312 HOH HOH . 
F 5 HOH A 13 313 313 HOH HOH . 
F 5 HOH A 14 314 314 HOH HOH . 
F 5 HOH A 15 315 315 HOH HOH . 
F 5 HOH A 16 316 316 HOH HOH . 
F 5 HOH A 17 317 317 HOH HOH . 
F 5 HOH A 18 318 318 HOH HOH . 
F 5 HOH A 19 319 319 HOH HOH . 
F 5 HOH A 20 320 320 HOH HOH . 
F 5 HOH A 21 321 321 HOH HOH . 
F 5 HOH A 22 322 322 HOH HOH . 
F 5 HOH A 23 323 323 HOH HOH . 
F 5 HOH A 24 324 324 HOH HOH . 
F 5 HOH A 25 325 325 HOH HOH . 
F 5 HOH A 26 326 326 HOH HOH . 
F 5 HOH A 27 327 327 HOH HOH . 
F 5 HOH A 28 328 328 HOH HOH . 
F 5 HOH A 29 329 329 HOH HOH . 
F 5 HOH A 30 330 330 HOH HOH . 
F 5 HOH A 31 331 331 HOH HOH . 
F 5 HOH A 32 332 332 HOH HOH . 
F 5 HOH A 33 333 333 HOH HOH . 
F 5 HOH A 34 334 334 HOH HOH . 
F 5 HOH A 35 335 335 HOH HOH . 
F 5 HOH A 36 336 336 HOH HOH . 
F 5 HOH A 37 337 337 HOH HOH . 
F 5 HOH A 38 338 338 HOH HOH . 
F 5 HOH A 39 339 339 HOH HOH . 
F 5 HOH A 40 340 340 HOH HOH . 
F 5 HOH A 41 341 341 HOH HOH . 
F 5 HOH A 42 342 342 HOH HOH . 
F 5 HOH A 43 343 343 HOH HOH . 
F 5 HOH A 44 344 344 HOH HOH . 
F 5 HOH A 45 345 345 HOH HOH . 
F 5 HOH A 46 346 346 HOH HOH . 
F 5 HOH A 47 347 347 HOH HOH . 
F 5 HOH A 48 348 348 HOH HOH . 
F 5 HOH A 49 349 349 HOH HOH . 
F 5 HOH A 50 350 350 HOH HOH . 
F 5 HOH A 51 351 351 HOH HOH . 
F 5 HOH A 52 352 352 HOH HOH . 
F 5 HOH A 53 353 353 HOH HOH . 
F 5 HOH A 54 354 354 HOH HOH . 
F 5 HOH A 55 355 355 HOH HOH . 
F 5 HOH A 56 356 356 HOH HOH . 
F 5 HOH A 57 357 357 HOH HOH . 
F 5 HOH A 58 358 358 HOH HOH . 
F 5 HOH A 59 359 359 HOH HOH . 
F 5 HOH A 60 360 360 HOH HOH . 
F 5 HOH A 61 361 361 HOH HOH . 
F 5 HOH A 62 362 362 HOH HOH . 
F 5 HOH A 63 363 363 HOH HOH . 
F 5 HOH A 64 364 364 HOH HOH . 
F 5 HOH A 65 365 365 HOH HOH . 
F 5 HOH A 66 366 366 HOH HOH . 
F 5 HOH A 67 367 367 HOH HOH . 
F 5 HOH A 68 368 368 HOH HOH . 
F 5 HOH A 69 369 369 HOH HOH . 
F 5 HOH A 70 370 370 HOH HOH . 
F 5 HOH A 71 371 371 HOH HOH . 
F 5 HOH A 72 372 372 HOH HOH . 
F 5 HOH A 73 373 373 HOH HOH . 
F 5 HOH A 74 374 374 HOH HOH . 
F 5 HOH A 75 375 375 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . E 4 -12.636 58.984 -11.015 1 48.16 ? C TRS 204 A 1 
HETATM 2 C C1 TRS . . . E 4 -13.362 57.671 -10.724 1 41.19 ? C1 TRS 204 A 1 
HETATM 3 C C2 TRS . . . E 4 -11.866 58.889 -12.334 1 44.85 ? C2 TRS 204 A 1 
HETATM 4 C C3 TRS . . . E 4 -13.644 60.116 -11.144 1 42.27 ? C3 TRS 204 A 1 
HETATM 5 N N TRS . . . E 4 -11.73 59.327 -9.902 1 42.65 ? N TRS 204 A 1 
HETATM 6 O O1 TRS . . . E 4 -12.61 56.814 -9.885 1 40.24 ? O1 TRS 204 A 1 
HETATM 7 O O2 TRS . . . E 4 -12.742 59.2 -13.402 1 42.47 ? O2 TRS 204 A 1 
HETATM 8 O O3 TRS . . . E 4 -12.973 61.304 -10.772 1 43.33 ? O3 TRS 204 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#