data_6VI8 # _model_server_result.job_id fMkoqnlPIm9JJC0FgzRY5Q _model_server_result.datetime_utc '2024-10-19 20:17:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6VI8 # _exptl.entry_id 6VI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 15.999 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'OXYGEN ATOM' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VI8 _cell.length_a 58.04 _cell.length_b 58.04 _cell.length_c 231.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.02 50.264114 38.548333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 C FE FE . A FE 202 1_555 E O O . A O 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc10 C FE FE . A FE 202 1_555 G O11 3HA . A 3HA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula O _chem_comp.formula_weight 15.999 _chem_comp.id O _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VI8 _atom_sites.fract_transf_matrix[1][1] 0.017229 _atom_sites.fract_transf_matrix[1][2] 0.009947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 400 TRS TRS . C 3 FE A 1 202 201 FE FE . D 4 FE2 A 1 203 202 FE2 FE2 . E 5 O A 1 204 301 O O . F 5 O A 1 205 302 O O . G 6 3HA A 1 206 303 3HA 3HA . H 7 HOH A 1 301 74 HOH HOH . H 7 HOH A 2 302 91 HOH HOH . H 7 HOH A 3 303 147 HOH HOH . H 7 HOH A 4 304 81 HOH HOH . H 7 HOH A 5 305 140 HOH HOH . H 7 HOH A 6 306 69 HOH HOH . H 7 HOH A 7 307 106 HOH HOH . H 7 HOH A 8 308 51 HOH HOH . H 7 HOH A 9 309 162 HOH HOH . H 7 HOH A 10 310 187 HOH HOH . H 7 HOH A 11 311 39 HOH HOH . H 7 HOH A 12 312 67 HOH HOH . H 7 HOH A 13 313 14 HOH HOH . H 7 HOH A 14 314 23 HOH HOH . H 7 HOH A 15 315 55 HOH HOH . H 7 HOH A 16 316 75 HOH HOH . H 7 HOH A 17 317 182 HOH HOH . H 7 HOH A 18 318 176 HOH HOH . H 7 HOH A 19 319 132 HOH HOH . H 7 HOH A 20 320 46 HOH HOH . H 7 HOH A 21 321 10 HOH HOH . H 7 HOH A 22 322 82 HOH HOH . H 7 HOH A 23 323 175 HOH HOH . H 7 HOH A 24 324 76 HOH HOH . H 7 HOH A 25 325 36 HOH HOH . H 7 HOH A 26 326 60 HOH HOH . H 7 HOH A 27 327 181 HOH HOH . H 7 HOH A 28 328 65 HOH HOH . H 7 HOH A 29 329 133 HOH HOH . H 7 HOH A 30 330 87 HOH HOH . H 7 HOH A 31 331 42 HOH HOH . H 7 HOH A 32 332 47 HOH HOH . H 7 HOH A 33 333 73 HOH HOH . H 7 HOH A 34 334 54 HOH HOH . H 7 HOH A 35 335 9 HOH HOH . H 7 HOH A 36 336 62 HOH HOH . H 7 HOH A 37 337 72 HOH HOH . H 7 HOH A 38 338 45 HOH HOH . H 7 HOH A 39 339 107 HOH HOH . H 7 HOH A 40 340 3 HOH HOH . H 7 HOH A 41 341 125 HOH HOH . H 7 HOH A 42 342 71 HOH HOH . H 7 HOH A 43 343 12 HOH HOH . H 7 HOH A 44 344 2 HOH HOH . H 7 HOH A 45 345 28 HOH HOH . H 7 HOH A 46 346 37 HOH HOH . H 7 HOH A 47 347 41 HOH HOH . H 7 HOH A 48 348 18 HOH HOH . H 7 HOH A 49 349 61 HOH HOH . H 7 HOH A 50 350 78 HOH HOH . H 7 HOH A 51 351 34 HOH HOH . H 7 HOH A 52 352 188 HOH HOH . H 7 HOH A 53 353 170 HOH HOH . H 7 HOH A 54 354 13 HOH HOH . H 7 HOH A 55 355 172 HOH HOH . H 7 HOH A 56 356 11 HOH HOH . H 7 HOH A 57 357 70 HOH HOH . H 7 HOH A 58 358 63 HOH HOH . H 7 HOH A 59 359 31 HOH HOH . H 7 HOH A 60 360 8 HOH HOH . H 7 HOH A 61 361 52 HOH HOH . H 7 HOH A 62 362 109 HOH HOH . H 7 HOH A 63 363 24 HOH HOH . H 7 HOH A 64 364 97 HOH HOH . H 7 HOH A 65 365 48 HOH HOH . H 7 HOH A 66 366 80 HOH HOH . H 7 HOH A 67 367 114 HOH HOH . H 7 HOH A 68 368 6 HOH HOH . H 7 HOH A 69 369 64 HOH HOH . H 7 HOH A 70 370 95 HOH HOH . H 7 HOH A 71 371 32 HOH HOH . H 7 HOH A 72 372 15 HOH HOH . H 7 HOH A 73 373 104 HOH HOH . H 7 HOH A 74 374 190 HOH HOH . H 7 HOH A 75 375 5 HOH HOH . H 7 HOH A 76 376 79 HOH HOH . H 7 HOH A 77 377 4 HOH HOH . H 7 HOH A 78 378 16 HOH HOH . H 7 HOH A 79 379 183 HOH HOH . H 7 HOH A 80 380 43 HOH HOH . H 7 HOH A 81 381 53 HOH HOH . H 7 HOH A 82 382 122 HOH HOH . H 7 HOH A 83 383 33 HOH HOH . H 7 HOH A 84 384 128 HOH HOH . H 7 HOH A 85 385 152 HOH HOH . H 7 HOH A 86 386 40 HOH HOH . H 7 HOH A 87 387 110 HOH HOH . H 7 HOH A 88 388 193 HOH HOH . H 7 HOH A 89 389 25 HOH HOH . H 7 HOH A 90 390 135 HOH HOH . H 7 HOH A 91 391 35 HOH HOH . H 7 HOH A 92 392 21 HOH HOH . H 7 HOH A 93 393 26 HOH HOH . H 7 HOH A 94 394 7 HOH HOH . H 7 HOH A 95 395 49 HOH HOH . H 7 HOH A 96 396 86 HOH HOH . H 7 HOH A 97 397 84 HOH HOH . H 7 HOH A 98 398 83 HOH HOH . H 7 HOH A 99 399 108 HOH HOH . H 7 HOH A 100 400 179 HOH HOH . H 7 HOH A 101 401 68 HOH HOH . H 7 HOH A 102 402 105 HOH HOH . H 7 HOH A 103 403 17 HOH HOH . H 7 HOH A 104 404 59 HOH HOH . H 7 HOH A 105 405 103 HOH HOH . H 7 HOH A 106 406 121 HOH HOH . H 7 HOH A 107 407 94 HOH HOH . H 7 HOH A 108 408 119 HOH HOH . H 7 HOH A 109 409 85 HOH HOH . H 7 HOH A 110 410 138 HOH HOH . H 7 HOH A 111 411 22 HOH HOH . H 7 HOH A 112 412 30 HOH HOH . H 7 HOH A 113 413 20 HOH HOH . H 7 HOH A 114 414 143 HOH HOH . H 7 HOH A 115 415 38 HOH HOH . H 7 HOH A 116 416 93 HOH HOH . H 7 HOH A 117 417 178 HOH HOH . H 7 HOH A 118 418 174 HOH HOH . H 7 HOH A 119 419 192 HOH HOH . H 7 HOH A 120 420 130 HOH HOH . H 7 HOH A 121 421 88 HOH HOH . H 7 HOH A 122 422 160 HOH HOH . H 7 HOH A 123 423 1 HOH HOH . H 7 HOH A 124 424 99 HOH HOH . H 7 HOH A 125 425 164 HOH HOH . H 7 HOH A 126 426 92 HOH HOH . H 7 HOH A 127 427 167 HOH HOH . H 7 HOH A 128 428 117 HOH HOH . H 7 HOH A 129 429 150 HOH HOH . H 7 HOH A 130 430 163 HOH HOH . H 7 HOH A 131 431 27 HOH HOH . H 7 HOH A 132 432 139 HOH HOH . H 7 HOH A 133 433 153 HOH HOH . H 7 HOH A 134 434 111 HOH HOH . H 7 HOH A 135 435 102 HOH HOH . H 7 HOH A 136 436 189 HOH HOH . H 7 HOH A 137 437 89 HOH HOH . H 7 HOH A 138 438 98 HOH HOH . H 7 HOH A 139 439 141 HOH HOH . H 7 HOH A 140 440 19 HOH HOH . H 7 HOH A 141 441 137 HOH HOH . H 7 HOH A 142 442 173 HOH HOH . H 7 HOH A 143 443 123 HOH HOH . H 7 HOH A 144 444 165 HOH HOH . H 7 HOH A 145 445 146 HOH HOH . H 7 HOH A 146 446 155 HOH HOH . H 7 HOH A 147 447 127 HOH HOH . H 7 HOH A 148 448 129 HOH HOH . H 7 HOH A 149 449 126 HOH HOH . H 7 HOH A 150 450 124 HOH HOH . H 7 HOH A 151 451 148 HOH HOH . H 7 HOH A 152 452 169 HOH HOH . H 7 HOH A 153 453 101 HOH HOH . H 7 HOH A 154 454 29 HOH HOH . H 7 HOH A 155 455 151 HOH HOH . H 7 HOH A 156 456 184 HOH HOH . H 7 HOH A 157 457 185 HOH HOH . H 7 HOH A 158 458 180 HOH HOH . H 7 HOH A 159 459 177 HOH HOH . H 7 HOH A 160 460 161 HOH HOH . H 7 HOH A 161 461 158 HOH HOH . H 7 HOH A 162 462 131 HOH HOH . H 7 HOH A 163 463 157 HOH HOH . H 7 HOH A 164 464 100 HOH HOH . H 7 HOH A 165 465 191 HOH HOH . H 7 HOH A 166 466 118 HOH HOH . H 7 HOH A 167 467 57 HOH HOH . H 7 HOH A 168 468 113 HOH HOH . H 7 HOH A 169 469 154 HOH HOH . H 7 HOH A 170 470 145 HOH HOH . H 7 HOH A 171 471 166 HOH HOH . H 7 HOH A 172 472 159 HOH HOH . H 7 HOH A 173 473 112 HOH HOH . H 7 HOH A 174 474 90 HOH HOH . H 7 HOH A 175 475 168 HOH HOH . H 7 HOH A 176 476 186 HOH HOH . H 7 HOH A 177 477 77 HOH HOH . H 7 HOH A 178 478 144 HOH HOH . H 7 HOH A 179 479 115 HOH HOH . H 7 HOH A 180 480 120 HOH HOH . H 7 HOH A 181 481 156 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol O _atom_site.label_atom_id O _atom_site.label_comp_id O _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 9.887 _atom_site.Cartn_y 22.102 _atom_site.Cartn_z 4.295 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id O _atom_site.auth_comp_id O _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #