data_6VI9
#
_model_server_result.job_id            6p2OIZFpAmKmrH3xU0Oitg 
_model_server_result.datetime_utc      '2024-10-19 20:17:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vi9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6VI9 
#
_exptl.entry_id    6VI9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              237.955 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R,6Z)-5-(hydroperoxy-kappaO)-5-(hydroxy-kappaO)-6-iminocyclohexa-1,3-diene-1-carboxylato(2-)iron 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VI9 
_cell.length_a            57.79 
_cell.length_b            57.79 
_cell.length_c            231.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VI9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 28.895 50.047608 38.573333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE QXM . A QXM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE QXM . A QXM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE QXM . A QXM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE QXM . A QXM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 B FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
#
_chem_comp.formula           'C7 H4 Fe N O5 1' 
_chem_comp.formula_weight    237.955 
_chem_comp.id                QXM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R,6Z)-5-(hydroperoxy-kappaO)-5-(hydroxy-kappaO)-6-iminocyclohexa-1,3-diene-1-carboxylato(2-)iron 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C02 QXM sing 277 n n 
C10 C09 QXM sing 278 n n 
C10 O11 QXM sing 279 n n 
FE O02 QXM sing 280 n n 
O01 O02 QXM sing 281 n n 
C02 C03 QXM sing 282 n n 
C02 N01 QXM doub 283 n n 
C03 C04 QXM sing 284 n n 
C03 C07 QXM doub 285 n n 
C04 O05 QXM doub 286 n n 
C04 O06 QXM sing 287 n n 
C07 C08 QXM sing 288 n n 
C08 C09 QXM doub 289 n n 
C10 O01 QXM sing 290 n n 
C07 H2 QXM sing 291 n n 
C08 H4 QXM sing 292 n n 
C09 H6 QXM sing 293 n n 
N01 H8 QXM sing 294 n n 
O11 FE QXM sing 295 n n 
#
_atom_sites.entry_id                     6VI9 
_atom_sites.fract_transf_matrix[1][1]    0.017304 
_atom_sites.fract_transf_matrix[1][2]    0.00999 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 301 301 FE2 FE2 . 
C 3 QXM A 1 302 302 QXM EC1 . 
D 4 TRS A 1 303 303 TRS TRS . 
E 5 HOH A 1 401 401 HOH HOH . 
E 5 HOH A 2 402 402 HOH HOH . 
E 5 HOH A 3 403 403 HOH HOH . 
E 5 HOH A 4 404 404 HOH HOH . 
E 5 HOH A 5 405 405 HOH HOH . 
E 5 HOH A 6 406 406 HOH HOH . 
E 5 HOH A 7 407 407 HOH HOH . 
E 5 HOH A 8 408 408 HOH HOH . 
E 5 HOH A 9 409 409 HOH HOH . 
E 5 HOH A 10 410 410 HOH HOH . 
E 5 HOH A 11 411 411 HOH HOH . 
E 5 HOH A 12 412 412 HOH HOH . 
E 5 HOH A 13 413 413 HOH HOH . 
E 5 HOH A 14 414 414 HOH HOH . 
E 5 HOH A 15 415 415 HOH HOH . 
E 5 HOH A 16 416 416 HOH HOH . 
E 5 HOH A 17 417 417 HOH HOH . 
E 5 HOH A 18 418 418 HOH HOH . 
E 5 HOH A 19 419 419 HOH HOH . 
E 5 HOH A 20 420 420 HOH HOH . 
E 5 HOH A 21 421 421 HOH HOH . 
E 5 HOH A 22 422 422 HOH HOH . 
E 5 HOH A 23 423 423 HOH HOH . 
E 5 HOH A 24 424 424 HOH HOH . 
E 5 HOH A 25 425 425 HOH HOH . 
E 5 HOH A 26 426 426 HOH HOH . 
E 5 HOH A 27 427 427 HOH HOH . 
E 5 HOH A 28 428 428 HOH HOH . 
E 5 HOH A 29 429 429 HOH HOH . 
E 5 HOH A 30 430 430 HOH HOH . 
E 5 HOH A 31 431 431 HOH HOH . 
E 5 HOH A 32 432 432 HOH HOH . 
E 5 HOH A 33 433 433 HOH HOH . 
E 5 HOH A 34 434 434 HOH HOH . 
E 5 HOH A 35 435 435 HOH HOH . 
E 5 HOH A 36 436 436 HOH HOH . 
E 5 HOH A 37 437 437 HOH HOH . 
E 5 HOH A 38 438 438 HOH HOH . 
E 5 HOH A 39 439 439 HOH HOH . 
E 5 HOH A 40 440 440 HOH HOH . 
E 5 HOH A 41 441 441 HOH HOH . 
E 5 HOH A 42 442 442 HOH HOH . 
E 5 HOH A 43 443 443 HOH HOH . 
E 5 HOH A 44 444 444 HOH HOH . 
E 5 HOH A 45 445 445 HOH HOH . 
E 5 HOH A 46 446 446 HOH HOH . 
E 5 HOH A 47 447 447 HOH HOH . 
E 5 HOH A 48 448 448 HOH HOH . 
E 5 HOH A 49 449 449 HOH HOH . 
E 5 HOH A 50 450 450 HOH HOH . 
E 5 HOH A 51 451 451 HOH HOH . 
E 5 HOH A 52 452 452 HOH HOH . 
E 5 HOH A 53 453 453 HOH HOH . 
E 5 HOH A 54 454 454 HOH HOH . 
E 5 HOH A 55 455 455 HOH HOH . 
E 5 HOH A 56 456 456 HOH HOH . 
E 5 HOH A 57 457 457 HOH HOH . 
E 5 HOH A 58 458 458 HOH HOH . 
E 5 HOH A 59 459 459 HOH HOH . 
E 5 HOH A 60 460 460 HOH HOH . 
E 5 HOH A 61 461 461 HOH HOH . 
E 5 HOH A 62 462 462 HOH HOH . 
E 5 HOH A 63 463 463 HOH HOH . 
E 5 HOH A 64 464 464 HOH HOH . 
E 5 HOH A 65 465 465 HOH HOH . 
E 5 HOH A 66 466 466 HOH HOH . 
E 5 HOH A 67 467 467 HOH HOH . 
E 5 HOH A 68 468 468 HOH HOH . 
E 5 HOH A 69 469 469 HOH HOH . 
E 5 HOH A 70 470 470 HOH HOH . 
E 5 HOH A 71 471 471 HOH HOH . 
E 5 HOH A 72 472 472 HOH HOH . 
E 5 HOH A 73 473 473 HOH HOH . 
E 5 HOH A 74 474 474 HOH HOH . 
E 5 HOH A 75 475 475 HOH HOH . 
E 5 HOH A 76 476 476 HOH HOH . 
E 5 HOH A 77 477 477 HOH HOH . 
E 5 HOH A 78 478 478 HOH HOH . 
E 5 HOH A 79 479 479 HOH HOH . 
E 5 HOH A 80 480 480 HOH HOH . 
E 5 HOH A 81 481 481 HOH HOH . 
E 5 HOH A 82 482 482 HOH HOH . 
E 5 HOH A 83 483 483 HOH HOH . 
E 5 HOH A 84 484 484 HOH HOH . 
E 5 HOH A 85 485 485 HOH HOH . 
E 5 HOH A 86 486 486 HOH HOH . 
E 5 HOH A 87 487 487 HOH HOH . 
E 5 HOH A 88 488 488 HOH HOH . 
E 5 HOH A 89 489 489 HOH HOH . 
E 5 HOH A 90 490 490 HOH HOH . 
E 5 HOH A 91 491 491 HOH HOH . 
E 5 HOH A 92 492 492 HOH HOH . 
E 5 HOH A 93 493 493 HOH HOH . 
E 5 HOH A 94 494 494 HOH HOH . 
E 5 HOH A 95 495 495 HOH HOH . 
E 5 HOH A 96 496 496 HOH HOH . 
E 5 HOH A 97 497 497 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 QXM . . . C 3 10.57 23.823 6.3 1 38.2 ? C10 QXM 302 A 1 
HETATM 2 FE FE QXM . . . C 3 10.522 21.201 7.112 1 36.82 ? FE QXM 302 A 1 
HETATM 3 O O01 QXM . . . C 3 9.914 22.782 4.933 1 43.89 ? O01 QXM 302 A 1 
HETATM 4 O O02 QXM . . . C 3 9.478 21.732 5.153 1 31.98 ? O02 QXM 302 A 1 
HETATM 5 C C02 QXM . . . C 3 9.12 24.138 6.861 1 38.85 ? C02 QXM 302 A 1 
HETATM 6 C C03 QXM . . . C 3 8.293 25.279 6.233 1 37.63 ? C03 QXM 302 A 1 
HETATM 7 C C04 QXM . . . C 3 6.749 25.249 6.201 1 32.08 ? C04 QXM 302 A 1 
HETATM 8 C C07 QXM . . . C 3 8.989 26.307 5.386 1 39.85 ? C07 QXM 302 A 1 
HETATM 9 C C08 QXM . . . C 3 10.365 26.043 4.84 1 50.52 ? C08 QXM 302 A 1 
HETATM 10 C C09 QXM . . . C 3 11.236 24.973 5.498 1 44.89 ? C09 QXM 302 A 1 
HETATM 11 N N01 QXM . . . C 3 8.528 23.33 7.628 1 28.2 ? N01 QXM 302 A 1 
HETATM 12 O O05 QXM . . . C 3 6.107 24.637 7.101 1 27.96 ? O05 QXM 302 A 1 
HETATM 13 O O06 QXM . . . C 3 6.107 25.852 5.277 1 28.36 -1 O06 QXM 302 A 1 
HETATM 14 O O11 QXM . . . C 3 11.51 23.499 7.304 1 30.8 ? O11 QXM 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#