data_6VIA # _model_server_result.job_id AD2apYu4ij28irzs3T81Zw _model_server_result.datetime_utc '2024-11-26 08:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6via # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6VIA # _exptl.entry_id 6VIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VIA _cell.length_a 58.517 _cell.length_b 58.517 _cell.length_c 231.902 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.2585 -50.677209 38.650333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 E FE FE . A FE 204 1_555 F O OH . A OH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc10 E FE FE . A FE 204 1_555 G O12 EAY . A EAY 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VIA _atom_sites.fract_transf_matrix[1][1] 0.017089 _atom_sites.fract_transf_matrix[1][2] 0.009866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 400 TRS TRS . C 2 TRS A 1 202 401 TRS TRS . D 3 FE2 A 1 203 202 FE2 FE2 . E 4 FE A 1 204 201 FE FE . F 5 OH A 1 205 302 OH OH . G 6 EAY A 1 206 301 EAY LIG . H 7 HOH A 1 301 31 HOH HOH . H 7 HOH A 2 302 208 HOH HOH . H 7 HOH A 3 303 178 HOH HOH . H 7 HOH A 4 304 165 HOH HOH . H 7 HOH A 5 305 44 HOH HOH . H 7 HOH A 6 306 69 HOH HOH . H 7 HOH A 7 307 108 HOH HOH . H 7 HOH A 8 308 97 HOH HOH . H 7 HOH A 9 309 64 HOH HOH . H 7 HOH A 10 310 226 HOH HOH . H 7 HOH A 11 311 24 HOH HOH . H 7 HOH A 12 312 26 HOH HOH . H 7 HOH A 13 313 38 HOH HOH . H 7 HOH A 14 314 73 HOH HOH . H 7 HOH A 15 315 61 HOH HOH . H 7 HOH A 16 316 10 HOH HOH . H 7 HOH A 17 317 68 HOH HOH . H 7 HOH A 18 318 217 HOH HOH . H 7 HOH A 19 319 30 HOH HOH . H 7 HOH A 20 320 18 HOH HOH . H 7 HOH A 21 321 60 HOH HOH . H 7 HOH A 22 322 112 HOH HOH . H 7 HOH A 23 323 6 HOH HOH . H 7 HOH A 24 324 48 HOH HOH . H 7 HOH A 25 325 206 HOH HOH . H 7 HOH A 26 326 126 HOH HOH . H 7 HOH A 27 327 167 HOH HOH . H 7 HOH A 28 328 17 HOH HOH . H 7 HOH A 29 329 42 HOH HOH . H 7 HOH A 30 330 78 HOH HOH . H 7 HOH A 31 331 8 HOH HOH . H 7 HOH A 32 332 63 HOH HOH . H 7 HOH A 33 333 16 HOH HOH . H 7 HOH A 34 334 139 HOH HOH . H 7 HOH A 35 335 101 HOH HOH . H 7 HOH A 36 336 100 HOH HOH . H 7 HOH A 37 337 82 HOH HOH . H 7 HOH A 38 338 45 HOH HOH . H 7 HOH A 39 339 146 HOH HOH . H 7 HOH A 40 340 155 HOH HOH . H 7 HOH A 41 341 19 HOH HOH . H 7 HOH A 42 342 22 HOH HOH . H 7 HOH A 43 343 4 HOH HOH . H 7 HOH A 44 344 58 HOH HOH . H 7 HOH A 45 345 20 HOH HOH . H 7 HOH A 46 346 96 HOH HOH . H 7 HOH A 47 347 1 HOH HOH . H 7 HOH A 48 348 36 HOH HOH . H 7 HOH A 49 349 109 HOH HOH . H 7 HOH A 50 350 9 HOH HOH . H 7 HOH A 51 351 169 HOH HOH . H 7 HOH A 52 352 121 HOH HOH . H 7 HOH A 53 353 11 HOH HOH . H 7 HOH A 54 354 190 HOH HOH . H 7 HOH A 55 355 35 HOH HOH . H 7 HOH A 56 356 199 HOH HOH . H 7 HOH A 57 357 66 HOH HOH . H 7 HOH A 58 358 12 HOH HOH . H 7 HOH A 59 359 93 HOH HOH . H 7 HOH A 60 360 2 HOH HOH . H 7 HOH A 61 361 51 HOH HOH . H 7 HOH A 62 362 50 HOH HOH . H 7 HOH A 63 363 57 HOH HOH . H 7 HOH A 64 364 46 HOH HOH . H 7 HOH A 65 365 7 HOH HOH . H 7 HOH A 66 366 140 HOH HOH . H 7 HOH A 67 367 161 HOH HOH . H 7 HOH A 68 368 5 HOH HOH . H 7 HOH A 69 369 29 HOH HOH . H 7 HOH A 70 370 43 HOH HOH . H 7 HOH A 71 371 198 HOH HOH . H 7 HOH A 72 372 76 HOH HOH . H 7 HOH A 73 373 79 HOH HOH . H 7 HOH A 74 374 25 HOH HOH . H 7 HOH A 75 375 102 HOH HOH . H 7 HOH A 76 376 34 HOH HOH . H 7 HOH A 77 377 110 HOH HOH . H 7 HOH A 78 378 52 HOH HOH . H 7 HOH A 79 379 15 HOH HOH . H 7 HOH A 80 380 144 HOH HOH . H 7 HOH A 81 381 27 HOH HOH . H 7 HOH A 82 382 55 HOH HOH . H 7 HOH A 83 383 154 HOH HOH . H 7 HOH A 84 384 92 HOH HOH . H 7 HOH A 85 385 123 HOH HOH . H 7 HOH A 86 386 87 HOH HOH . H 7 HOH A 87 387 111 HOH HOH . H 7 HOH A 88 388 122 HOH HOH . H 7 HOH A 89 389 37 HOH HOH . H 7 HOH A 90 390 28 HOH HOH . H 7 HOH A 91 391 77 HOH HOH . H 7 HOH A 92 392 32 HOH HOH . H 7 HOH A 93 393 56 HOH HOH . H 7 HOH A 94 394 23 HOH HOH . H 7 HOH A 95 395 13 HOH HOH . H 7 HOH A 96 396 153 HOH HOH . H 7 HOH A 97 397 3 HOH HOH . H 7 HOH A 98 398 39 HOH HOH . H 7 HOH A 99 399 33 HOH HOH . H 7 HOH A 100 400 21 HOH HOH . H 7 HOH A 101 401 14 HOH HOH . H 7 HOH A 102 402 158 HOH HOH . H 7 HOH A 103 403 41 HOH HOH . H 7 HOH A 104 404 172 HOH HOH . H 7 HOH A 105 405 91 HOH HOH . H 7 HOH A 106 406 201 HOH HOH . H 7 HOH A 107 407 104 HOH HOH . H 7 HOH A 108 408 135 HOH HOH . H 7 HOH A 109 409 62 HOH HOH . H 7 HOH A 110 410 119 HOH HOH . H 7 HOH A 111 411 171 HOH HOH . H 7 HOH A 112 412 177 HOH HOH . H 7 HOH A 113 413 49 HOH HOH . H 7 HOH A 114 414 225 HOH HOH . H 7 HOH A 115 415 162 HOH HOH . H 7 HOH A 116 416 180 HOH HOH . H 7 HOH A 117 417 150 HOH HOH . H 7 HOH A 118 418 185 HOH HOH . H 7 HOH A 119 419 143 HOH HOH . H 7 HOH A 120 420 141 HOH HOH . H 7 HOH A 121 421 47 HOH HOH . H 7 HOH A 122 422 84 HOH HOH . H 7 HOH A 123 423 133 HOH HOH . H 7 HOH A 124 424 207 HOH HOH . H 7 HOH A 125 425 74 HOH HOH . H 7 HOH A 126 426 118 HOH HOH . H 7 HOH A 127 427 228 HOH HOH . H 7 HOH A 128 428 136 HOH HOH . H 7 HOH A 129 429 163 HOH HOH . H 7 HOH A 130 430 85 HOH HOH . H 7 HOH A 131 431 147 HOH HOH . H 7 HOH A 132 432 222 HOH HOH . H 7 HOH A 133 433 157 HOH HOH . H 7 HOH A 134 434 105 HOH HOH . H 7 HOH A 135 435 230 HOH HOH . H 7 HOH A 136 436 195 HOH HOH . H 7 HOH A 137 437 142 HOH HOH . H 7 HOH A 138 438 94 HOH HOH . H 7 HOH A 139 439 152 HOH HOH . H 7 HOH A 140 440 219 HOH HOH . H 7 HOH A 141 441 54 HOH HOH . H 7 HOH A 142 442 227 HOH HOH . H 7 HOH A 143 443 211 HOH HOH . H 7 HOH A 144 444 229 HOH HOH . H 7 HOH A 145 445 191 HOH HOH . H 7 HOH A 146 446 81 HOH HOH . H 7 HOH A 147 447 156 HOH HOH . H 7 HOH A 148 448 148 HOH HOH . H 7 HOH A 149 449 193 HOH HOH . H 7 HOH A 150 450 220 HOH HOH . H 7 HOH A 151 451 189 HOH HOH . H 7 HOH A 152 452 53 HOH HOH . H 7 HOH A 153 453 231 HOH HOH . H 7 HOH A 154 454 120 HOH HOH . H 7 HOH A 155 455 99 HOH HOH . H 7 HOH A 156 456 224 HOH HOH . H 7 HOH A 157 457 212 HOH HOH . H 7 HOH A 158 458 213 HOH HOH . H 7 HOH A 159 459 181 HOH HOH . H 7 HOH A 160 460 184 HOH HOH . H 7 HOH A 161 461 88 HOH HOH . H 7 HOH A 162 462 186 HOH HOH . H 7 HOH A 163 463 40 HOH HOH . H 7 HOH A 164 464 71 HOH HOH . H 7 HOH A 165 465 103 HOH HOH . H 7 HOH A 166 466 202 HOH HOH . H 7 HOH A 167 467 215 HOH HOH . H 7 HOH A 168 468 168 HOH HOH . H 7 HOH A 169 469 183 HOH HOH . H 7 HOH A 170 470 90 HOH HOH . H 7 HOH A 171 471 188 HOH HOH . H 7 HOH A 172 472 132 HOH HOH . H 7 HOH A 173 473 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.85 _atom_site.Cartn_y -5.543 _atom_site.Cartn_z -10.38 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #