data_6VIA # _model_server_result.job_id X54bO8Kn14n2cmo3mHN9UA _model_server_result.datetime_utc '2024-11-26 08:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6via # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 6VIA # _exptl.entry_id 6VIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.135 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3E)-2-hydroxy-3-imino-2,3-dihydrooxepine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VIA _cell.length_a 58.517 _cell.length_b 58.517 _cell.length_c 231.902 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.2585 -50.677209 38.650333 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 E FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 E FE FE . A FE 204 1_555 F O OH . A OH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc10 E FE FE . A FE 204 1_555 G O12 EAY . A EAY 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C7 H7 N O4' _chem_comp.formula_weight 169.135 _chem_comp.id EAY _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3E)-2-hydroxy-3-imino-2,3-dihydrooxepine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C04 EAY doub 83 n n C07 C08 EAY sing 84 n n C07 C03 EAY doub 85 n n C08 C09 EAY doub 86 n n C03 C04 EAY sing 87 n n C03 C02 EAY sing 88 n n C04 O05 EAY sing 89 n n C11 C02 EAY sing 90 n n C11 O12 EAY sing 91 n n C11 O10 EAY sing 92 n n C02 N01 EAY doub 93 n n C09 O10 EAY sing 94 n n N01 H1 EAY sing 95 n n O05 H3 EAY sing 96 n n C07 H4 EAY sing 97 n n C08 H6 EAY sing 98 n n C09 H8 EAY sing 99 n n C11 H10 EAY sing 100 n n O12 H11 EAY sing 101 n n # _atom_sites.entry_id 6VIA _atom_sites.fract_transf_matrix[1][1] 0.017089 _atom_sites.fract_transf_matrix[1][2] 0.009866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 400 TRS TRS . C 2 TRS A 1 202 401 TRS TRS . D 3 FE2 A 1 203 202 FE2 FE2 . E 4 FE A 1 204 201 FE FE . F 5 OH A 1 205 302 OH OH . G 6 EAY A 1 206 301 EAY LIG . H 7 HOH A 1 301 31 HOH HOH . H 7 HOH A 2 302 208 HOH HOH . H 7 HOH A 3 303 178 HOH HOH . H 7 HOH A 4 304 165 HOH HOH . H 7 HOH A 5 305 44 HOH HOH . H 7 HOH A 6 306 69 HOH HOH . H 7 HOH A 7 307 108 HOH HOH . H 7 HOH A 8 308 97 HOH HOH . H 7 HOH A 9 309 64 HOH HOH . H 7 HOH A 10 310 226 HOH HOH . H 7 HOH A 11 311 24 HOH HOH . H 7 HOH A 12 312 26 HOH HOH . H 7 HOH A 13 313 38 HOH HOH . H 7 HOH A 14 314 73 HOH HOH . H 7 HOH A 15 315 61 HOH HOH . H 7 HOH A 16 316 10 HOH HOH . H 7 HOH A 17 317 68 HOH HOH . H 7 HOH A 18 318 217 HOH HOH . H 7 HOH A 19 319 30 HOH HOH . H 7 HOH A 20 320 18 HOH HOH . H 7 HOH A 21 321 60 HOH HOH . H 7 HOH A 22 322 112 HOH HOH . H 7 HOH A 23 323 6 HOH HOH . H 7 HOH A 24 324 48 HOH HOH . H 7 HOH A 25 325 206 HOH HOH . H 7 HOH A 26 326 126 HOH HOH . H 7 HOH A 27 327 167 HOH HOH . H 7 HOH A 28 328 17 HOH HOH . H 7 HOH A 29 329 42 HOH HOH . H 7 HOH A 30 330 78 HOH HOH . H 7 HOH A 31 331 8 HOH HOH . H 7 HOH A 32 332 63 HOH HOH . H 7 HOH A 33 333 16 HOH HOH . H 7 HOH A 34 334 139 HOH HOH . H 7 HOH A 35 335 101 HOH HOH . H 7 HOH A 36 336 100 HOH HOH . H 7 HOH A 37 337 82 HOH HOH . H 7 HOH A 38 338 45 HOH HOH . H 7 HOH A 39 339 146 HOH HOH . H 7 HOH A 40 340 155 HOH HOH . H 7 HOH A 41 341 19 HOH HOH . H 7 HOH A 42 342 22 HOH HOH . H 7 HOH A 43 343 4 HOH HOH . H 7 HOH A 44 344 58 HOH HOH . H 7 HOH A 45 345 20 HOH HOH . H 7 HOH A 46 346 96 HOH HOH . H 7 HOH A 47 347 1 HOH HOH . H 7 HOH A 48 348 36 HOH HOH . H 7 HOH A 49 349 109 HOH HOH . H 7 HOH A 50 350 9 HOH HOH . H 7 HOH A 51 351 169 HOH HOH . H 7 HOH A 52 352 121 HOH HOH . H 7 HOH A 53 353 11 HOH HOH . H 7 HOH A 54 354 190 HOH HOH . H 7 HOH A 55 355 35 HOH HOH . H 7 HOH A 56 356 199 HOH HOH . H 7 HOH A 57 357 66 HOH HOH . H 7 HOH A 58 358 12 HOH HOH . H 7 HOH A 59 359 93 HOH HOH . H 7 HOH A 60 360 2 HOH HOH . H 7 HOH A 61 361 51 HOH HOH . H 7 HOH A 62 362 50 HOH HOH . H 7 HOH A 63 363 57 HOH HOH . H 7 HOH A 64 364 46 HOH HOH . H 7 HOH A 65 365 7 HOH HOH . H 7 HOH A 66 366 140 HOH HOH . H 7 HOH A 67 367 161 HOH HOH . H 7 HOH A 68 368 5 HOH HOH . H 7 HOH A 69 369 29 HOH HOH . H 7 HOH A 70 370 43 HOH HOH . H 7 HOH A 71 371 198 HOH HOH . H 7 HOH A 72 372 76 HOH HOH . H 7 HOH A 73 373 79 HOH HOH . H 7 HOH A 74 374 25 HOH HOH . H 7 HOH A 75 375 102 HOH HOH . H 7 HOH A 76 376 34 HOH HOH . H 7 HOH A 77 377 110 HOH HOH . H 7 HOH A 78 378 52 HOH HOH . H 7 HOH A 79 379 15 HOH HOH . H 7 HOH A 80 380 144 HOH HOH . H 7 HOH A 81 381 27 HOH HOH . H 7 HOH A 82 382 55 HOH HOH . H 7 HOH A 83 383 154 HOH HOH . H 7 HOH A 84 384 92 HOH HOH . H 7 HOH A 85 385 123 HOH HOH . H 7 HOH A 86 386 87 HOH HOH . H 7 HOH A 87 387 111 HOH HOH . H 7 HOH A 88 388 122 HOH HOH . H 7 HOH A 89 389 37 HOH HOH . H 7 HOH A 90 390 28 HOH HOH . H 7 HOH A 91 391 77 HOH HOH . H 7 HOH A 92 392 32 HOH HOH . H 7 HOH A 93 393 56 HOH HOH . H 7 HOH A 94 394 23 HOH HOH . H 7 HOH A 95 395 13 HOH HOH . H 7 HOH A 96 396 153 HOH HOH . H 7 HOH A 97 397 3 HOH HOH . H 7 HOH A 98 398 39 HOH HOH . H 7 HOH A 99 399 33 HOH HOH . H 7 HOH A 100 400 21 HOH HOH . H 7 HOH A 101 401 14 HOH HOH . H 7 HOH A 102 402 158 HOH HOH . H 7 HOH A 103 403 41 HOH HOH . H 7 HOH A 104 404 172 HOH HOH . H 7 HOH A 105 405 91 HOH HOH . H 7 HOH A 106 406 201 HOH HOH . H 7 HOH A 107 407 104 HOH HOH . H 7 HOH A 108 408 135 HOH HOH . H 7 HOH A 109 409 62 HOH HOH . H 7 HOH A 110 410 119 HOH HOH . H 7 HOH A 111 411 171 HOH HOH . H 7 HOH A 112 412 177 HOH HOH . H 7 HOH A 113 413 49 HOH HOH . H 7 HOH A 114 414 225 HOH HOH . H 7 HOH A 115 415 162 HOH HOH . H 7 HOH A 116 416 180 HOH HOH . H 7 HOH A 117 417 150 HOH HOH . H 7 HOH A 118 418 185 HOH HOH . H 7 HOH A 119 419 143 HOH HOH . H 7 HOH A 120 420 141 HOH HOH . H 7 HOH A 121 421 47 HOH HOH . H 7 HOH A 122 422 84 HOH HOH . H 7 HOH A 123 423 133 HOH HOH . H 7 HOH A 124 424 207 HOH HOH . H 7 HOH A 125 425 74 HOH HOH . H 7 HOH A 126 426 118 HOH HOH . H 7 HOH A 127 427 228 HOH HOH . H 7 HOH A 128 428 136 HOH HOH . H 7 HOH A 129 429 163 HOH HOH . H 7 HOH A 130 430 85 HOH HOH . H 7 HOH A 131 431 147 HOH HOH . H 7 HOH A 132 432 222 HOH HOH . H 7 HOH A 133 433 157 HOH HOH . H 7 HOH A 134 434 105 HOH HOH . H 7 HOH A 135 435 230 HOH HOH . H 7 HOH A 136 436 195 HOH HOH . H 7 HOH A 137 437 142 HOH HOH . H 7 HOH A 138 438 94 HOH HOH . H 7 HOH A 139 439 152 HOH HOH . H 7 HOH A 140 440 219 HOH HOH . H 7 HOH A 141 441 54 HOH HOH . H 7 HOH A 142 442 227 HOH HOH . H 7 HOH A 143 443 211 HOH HOH . H 7 HOH A 144 444 229 HOH HOH . H 7 HOH A 145 445 191 HOH HOH . H 7 HOH A 146 446 81 HOH HOH . H 7 HOH A 147 447 156 HOH HOH . H 7 HOH A 148 448 148 HOH HOH . H 7 HOH A 149 449 193 HOH HOH . H 7 HOH A 150 450 220 HOH HOH . H 7 HOH A 151 451 189 HOH HOH . H 7 HOH A 152 452 53 HOH HOH . H 7 HOH A 153 453 231 HOH HOH . H 7 HOH A 154 454 120 HOH HOH . H 7 HOH A 155 455 99 HOH HOH . H 7 HOH A 156 456 224 HOH HOH . H 7 HOH A 157 457 212 HOH HOH . H 7 HOH A 158 458 213 HOH HOH . H 7 HOH A 159 459 181 HOH HOH . H 7 HOH A 160 460 184 HOH HOH . H 7 HOH A 161 461 88 HOH HOH . H 7 HOH A 162 462 186 HOH HOH . H 7 HOH A 163 463 40 HOH HOH . H 7 HOH A 164 464 71 HOH HOH . H 7 HOH A 165 465 103 HOH HOH . H 7 HOH A 166 466 202 HOH HOH . H 7 HOH A 167 467 215 HOH HOH . H 7 HOH A 168 468 168 HOH HOH . H 7 HOH A 169 469 183 HOH HOH . H 7 HOH A 170 470 90 HOH HOH . H 7 HOH A 171 471 188 HOH HOH . H 7 HOH A 172 472 132 HOH HOH . H 7 HOH A 173 473 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 EAY . . . G 6 -8.836 -24.002 7.608 0.8 38.24 ? N01 EAY 206 A 1 HETATM 2 C C02 EAY . . . G 6 -9.512 -24.853 6.954 0.8 38.21 ? C02 EAY 206 A 1 HETATM 3 C C03 EAY . . . G 6 -8.743 -25.75 5.956 0.8 36.39 ? C03 EAY 206 A 1 HETATM 4 C C04 EAY . . . G 6 -7.214 -25.725 5.958 0.8 31.17 ? C04 EAY 206 A 1 HETATM 5 O O05 EAY . . . G 6 -6.615 -25.165 6.913 0.8 28.52 ? O05 EAY 206 A 1 HETATM 6 O O06 EAY . . . G 6 -6.559 -26.279 5.041 0.8 32.73 -1 O06 EAY 206 A 1 HETATM 7 C C07 EAY . . . G 6 -9.433 -26.868 5.162 0.8 42.85 ? C07 EAY 206 A 1 HETATM 8 C C08 EAY . . . G 6 -10.757 -27.429 5.67 0.8 43.54 ? C08 EAY 206 A 1 HETATM 9 C C09 EAY . . . G 6 -11.079 -27.187 7.146 0.8 39.81 ? C09 EAY 206 A 1 HETATM 10 O O10 EAY . . . G 6 -11.539 -25.946 7.635 0.8 42.36 ? O10 EAY 206 A 1 HETATM 11 C C11 EAY . . . G 6 -11.079 -24.82 6.914 0.8 46.39 ? C11 EAY 206 A 1 HETATM 12 O O12 EAY . . . G 6 -11.866 -23.578 7.29 0.8 36.28 ? O12 EAY 206 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #