data_6VIB
#
_model_server_result.job_id            NI287taKmAh-DdR2f5LizA 
_model_server_result.datetime_utc      '2024-10-19 20:18:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6VIB 
#
_exptl.entry_id    6VIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6VIB 
_cell.length_a            58.33 
_cell.length_b            58.33 
_cell.length_c            232.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.165 -50.515262 38.673333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc9 C FE FE2 . A FE2 202 1_555 E O1 2FO . A 2FO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc10 C FE FE2 . A FE2 202 1_555 E O 2FO . A 2FO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 353 n n 
C C2 TRS sing 354 n n 
C C3 TRS sing 355 n n 
C N TRS sing 356 n n 
C1 O1 TRS sing 357 n n 
C1 H11 TRS sing 358 n n 
C1 H12 TRS sing 359 n n 
C2 O2 TRS sing 360 n n 
C2 H21 TRS sing 361 n n 
C2 H22 TRS sing 362 n n 
C3 O3 TRS sing 363 n n 
C3 H31 TRS sing 364 n n 
C3 H32 TRS sing 365 n n 
N HN1 TRS sing 366 n n 
N HN2 TRS sing 367 n n 
N HN3 TRS sing 368 n n 
O1 HO1 TRS sing 369 n n 
O2 HO2 TRS sing 370 n n 
O3 HO3 TRS sing 371 n n 
#
_atom_sites.entry_id                     6VIB 
_atom_sites.fract_transf_matrix[1][1]    0.017144 
_atom_sites.fract_transf_matrix[1][2]    0.009898 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00431 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRS A 1 201 201 TRS TRS . 
C 3 FE2 A 1 202 202 FE2 FE2 . 
D 3 FE2 A 1 203 203 FE2 FE2 . 
E 4 2FO A 1 204 300 2FO ACM . 
F 5 HOH A 1 301 172 HOH HOH . 
F 5 HOH A 2 302 121 HOH HOH . 
F 5 HOH A 3 303 28 HOH HOH . 
F 5 HOH A 4 304 79 HOH HOH . 
F 5 HOH A 5 305 87 HOH HOH . 
F 5 HOH A 6 306 48 HOH HOH . 
F 5 HOH A 7 307 92 HOH HOH . 
F 5 HOH A 8 308 56 HOH HOH . 
F 5 HOH A 9 309 140 HOH HOH . 
F 5 HOH A 10 310 128 HOH HOH . 
F 5 HOH A 11 311 71 HOH HOH . 
F 5 HOH A 12 312 138 HOH HOH . 
F 5 HOH A 13 313 64 HOH HOH . 
F 5 HOH A 14 314 116 HOH HOH . 
F 5 HOH A 15 315 20 HOH HOH . 
F 5 HOH A 16 316 50 HOH HOH . 
F 5 HOH A 17 317 40 HOH HOH . 
F 5 HOH A 18 318 136 HOH HOH . 
F 5 HOH A 19 319 108 HOH HOH . 
F 5 HOH A 20 320 8 HOH HOH . 
F 5 HOH A 21 321 12 HOH HOH . 
F 5 HOH A 22 322 27 HOH HOH . 
F 5 HOH A 23 323 113 HOH HOH . 
F 5 HOH A 24 324 75 HOH HOH . 
F 5 HOH A 25 325 95 HOH HOH . 
F 5 HOH A 26 326 82 HOH HOH . 
F 5 HOH A 27 327 41 HOH HOH . 
F 5 HOH A 28 328 51 HOH HOH . 
F 5 HOH A 29 329 153 HOH HOH . 
F 5 HOH A 30 330 65 HOH HOH . 
F 5 HOH A 31 331 154 HOH HOH . 
F 5 HOH A 32 332 1 HOH HOH . 
F 5 HOH A 33 333 96 HOH HOH . 
F 5 HOH A 34 334 30 HOH HOH . 
F 5 HOH A 35 335 125 HOH HOH . 
F 5 HOH A 36 336 69 HOH HOH . 
F 5 HOH A 37 337 132 HOH HOH . 
F 5 HOH A 38 338 142 HOH HOH . 
F 5 HOH A 39 339 160 HOH HOH . 
F 5 HOH A 40 340 78 HOH HOH . 
F 5 HOH A 41 341 106 HOH HOH . 
F 5 HOH A 42 342 61 HOH HOH . 
F 5 HOH A 43 343 88 HOH HOH . 
F 5 HOH A 44 344 21 HOH HOH . 
F 5 HOH A 45 345 6 HOH HOH . 
F 5 HOH A 46 346 7 HOH HOH . 
F 5 HOH A 47 347 18 HOH HOH . 
F 5 HOH A 48 348 72 HOH HOH . 
F 5 HOH A 49 349 53 HOH HOH . 
F 5 HOH A 50 350 22 HOH HOH . 
F 5 HOH A 51 351 94 HOH HOH . 
F 5 HOH A 52 352 67 HOH HOH . 
F 5 HOH A 53 353 26 HOH HOH . 
F 5 HOH A 54 354 134 HOH HOH . 
F 5 HOH A 55 355 74 HOH HOH . 
F 5 HOH A 56 356 31 HOH HOH . 
F 5 HOH A 57 357 25 HOH HOH . 
F 5 HOH A 58 358 57 HOH HOH . 
F 5 HOH A 59 359 29 HOH HOH . 
F 5 HOH A 60 360 52 HOH HOH . 
F 5 HOH A 61 361 16 HOH HOH . 
F 5 HOH A 62 362 99 HOH HOH . 
F 5 HOH A 63 363 55 HOH HOH . 
F 5 HOH A 64 364 14 HOH HOH . 
F 5 HOH A 65 365 80 HOH HOH . 
F 5 HOH A 66 366 63 HOH HOH . 
F 5 HOH A 67 367 124 HOH HOH . 
F 5 HOH A 68 368 19 HOH HOH . 
F 5 HOH A 69 369 3 HOH HOH . 
F 5 HOH A 70 370 4 HOH HOH . 
F 5 HOH A 71 371 68 HOH HOH . 
F 5 HOH A 72 372 9 HOH HOH . 
F 5 HOH A 73 373 173 HOH HOH . 
F 5 HOH A 74 374 10 HOH HOH . 
F 5 HOH A 75 375 83 HOH HOH . 
F 5 HOH A 76 376 11 HOH HOH . 
F 5 HOH A 77 377 62 HOH HOH . 
F 5 HOH A 78 378 13 HOH HOH . 
F 5 HOH A 79 379 135 HOH HOH . 
F 5 HOH A 80 380 38 HOH HOH . 
F 5 HOH A 81 381 60 HOH HOH . 
F 5 HOH A 82 382 15 HOH HOH . 
F 5 HOH A 83 383 98 HOH HOH . 
F 5 HOH A 84 384 44 HOH HOH . 
F 5 HOH A 85 385 58 HOH HOH . 
F 5 HOH A 86 386 24 HOH HOH . 
F 5 HOH A 87 387 23 HOH HOH . 
F 5 HOH A 88 388 5 HOH HOH . 
F 5 HOH A 89 389 35 HOH HOH . 
F 5 HOH A 90 390 36 HOH HOH . 
F 5 HOH A 91 391 39 HOH HOH . 
F 5 HOH A 92 392 85 HOH HOH . 
F 5 HOH A 93 393 119 HOH HOH . 
F 5 HOH A 94 394 54 HOH HOH . 
F 5 HOH A 95 395 32 HOH HOH . 
F 5 HOH A 96 396 163 HOH HOH . 
F 5 HOH A 97 397 17 HOH HOH . 
F 5 HOH A 98 398 115 HOH HOH . 
F 5 HOH A 99 399 93 HOH HOH . 
F 5 HOH A 100 400 151 HOH HOH . 
F 5 HOH A 101 401 97 HOH HOH . 
F 5 HOH A 102 402 131 HOH HOH . 
F 5 HOH A 103 403 103 HOH HOH . 
F 5 HOH A 104 404 91 HOH HOH . 
F 5 HOH A 105 405 86 HOH HOH . 
F 5 HOH A 106 406 84 HOH HOH . 
F 5 HOH A 107 407 100 HOH HOH . 
F 5 HOH A 108 408 81 HOH HOH . 
F 5 HOH A 109 409 37 HOH HOH . 
F 5 HOH A 110 410 89 HOH HOH . 
F 5 HOH A 111 411 146 HOH HOH . 
F 5 HOH A 112 412 156 HOH HOH . 
F 5 HOH A 113 413 165 HOH HOH . 
F 5 HOH A 114 414 90 HOH HOH . 
F 5 HOH A 115 415 169 HOH HOH . 
F 5 HOH A 116 416 158 HOH HOH . 
F 5 HOH A 117 417 70 HOH HOH . 
F 5 HOH A 118 418 126 HOH HOH . 
F 5 HOH A 119 419 49 HOH HOH . 
F 5 HOH A 120 420 2 HOH HOH . 
F 5 HOH A 121 421 34 HOH HOH . 
F 5 HOH A 122 422 77 HOH HOH . 
F 5 HOH A 123 423 114 HOH HOH . 
F 5 HOH A 124 424 129 HOH HOH . 
F 5 HOH A 125 425 133 HOH HOH . 
F 5 HOH A 126 426 130 HOH HOH . 
F 5 HOH A 127 427 174 HOH HOH . 
F 5 HOH A 128 428 164 HOH HOH . 
F 5 HOH A 129 429 43 HOH HOH . 
F 5 HOH A 130 430 175 HOH HOH . 
F 5 HOH A 131 431 109 HOH HOH . 
F 5 HOH A 132 432 171 HOH HOH . 
F 5 HOH A 133 433 66 HOH HOH . 
F 5 HOH A 134 434 118 HOH HOH . 
F 5 HOH A 135 435 46 HOH HOH . 
F 5 HOH A 136 436 110 HOH HOH . 
F 5 HOH A 137 437 102 HOH HOH . 
F 5 HOH A 138 438 123 HOH HOH . 
F 5 HOH A 139 439 155 HOH HOH . 
F 5 HOH A 140 440 159 HOH HOH . 
F 5 HOH A 141 441 176 HOH HOH . 
F 5 HOH A 142 442 42 HOH HOH . 
F 5 HOH A 143 443 139 HOH HOH . 
F 5 HOH A 144 444 144 HOH HOH . 
F 5 HOH A 145 445 107 HOH HOH . 
F 5 HOH A 146 446 59 HOH HOH . 
F 5 HOH A 147 447 104 HOH HOH . 
F 5 HOH A 148 448 177 HOH HOH . 
F 5 HOH A 149 449 162 HOH HOH . 
F 5 HOH A 150 450 152 HOH HOH . 
F 5 HOH A 151 451 47 HOH HOH . 
F 5 HOH A 152 452 122 HOH HOH . 
F 5 HOH A 153 453 141 HOH HOH . 
F 5 HOH A 154 454 127 HOH HOH . 
F 5 HOH A 155 455 161 HOH HOH . 
F 5 HOH A 156 456 45 HOH HOH . 
F 5 HOH A 157 457 112 HOH HOH . 
F 5 HOH A 158 458 111 HOH HOH . 
F 5 HOH A 159 459 101 HOH HOH . 
F 5 HOH A 160 460 147 HOH HOH . 
F 5 HOH A 161 461 117 HOH HOH . 
F 5 HOH A 162 462 73 HOH HOH . 
F 5 HOH A 163 463 137 HOH HOH . 
F 5 HOH A 164 464 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . B 2 -16.347 -9.111 -10.909 1 32.91 ? C TRS 201 A 1 
HETATM 2 C C1 TRS . . . B 2 -17.293 -9.827 -9.952 1 35.12 ? C1 TRS 201 A 1 
HETATM 3 C C2 TRS . . . B 2 -17.069 -8.82 -12.24 1 38.79 ? C2 TRS 201 A 1 
HETATM 4 C C3 TRS . . . B 2 -15.835 -7.809 -10.275 1 37.51 ? C3 TRS 201 A 1 
HETATM 5 N N TRS . . . B 2 -15.251 -10.052 -11.243 1 32.27 ? N TRS 201 A 1 
HETATM 6 O O1 TRS . . . B 2 -17.463 -11.106 -10.492 1 33.52 ? O1 TRS 201 A 1 
HETATM 7 O O2 TRS . . . B 2 -16.113 -8.662 -13.278 1 38.89 ? O2 TRS 201 A 1 
HETATM 8 O O3 TRS . . . B 2 -16.916 -6.905 -10.125 1 46.84 ? O3 TRS 201 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#