data_6VIB # _model_server_result.job_id wF4O8YB3XVTia33sZj-XTQ _model_server_result.datetime_utc '2025-01-11 12:03:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6VIB # _exptl.entry_id 6VIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 185.134 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,3Z)-2-[(2Z)-3-hydroxyprop-2-en-1-ylidene]-3-iminobutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6VIB _cell.length_a 58.33 _cell.length_b 58.33 _cell.length_c 232.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.165 -50.515262 38.673333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 72 A HIS 51 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A OE1 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A OE2 GLU 78 A GLU 57 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 A NE2 HIS 116 A HIS 95 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A SG CYS 146 A CYS 125 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A SG CYS 149 A CYS 128 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 A SG CYS 183 A CYS 162 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A SG CYS 186 A CYS 165 1_555 D FE FE2 . A FE2 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc9 C FE FE2 . A FE2 202 1_555 E O1 2FO . A 2FO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 C FE FE2 . A FE2 202 1_555 E O 2FO . A 2FO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'C7 H7 N O5' _chem_comp.formula_weight 185.134 _chem_comp.id 2FO _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,3Z)-2-[(2Z)-3-hydroxyprop-2-en-1-ylidene]-3-iminobutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 2FO doub 1 n n O4 C6 2FO doub 2 n n C4 C3 2FO sing 3 n n C4 C5 2FO doub 4 z n O C1 2FO sing 5 n n C1 C 2FO sing 6 n n C3 C2 2FO doub 7 z n C5 O2 2FO sing 8 n n C6 C2 2FO sing 9 n n C6 O3 2FO sing 10 n n C2 C 2FO sing 11 n n C N 2FO doub 12 n n O3 H1 2FO sing 13 n n O H4 2FO sing 14 n n N H5 2FO sing 15 n n C3 H8 2FO sing 16 n n C4 H10 2FO sing 17 n n C5 H12 2FO sing 18 n n O2 H2 2FO sing 19 n n # _atom_sites.entry_id 6VIB _atom_sites.fract_transf_matrix[1][1] 0.017144 _atom_sites.fract_transf_matrix[1][2] 0.009898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 201 TRS TRS . C 3 FE2 A 1 202 202 FE2 FE2 . D 3 FE2 A 1 203 203 FE2 FE2 . E 4 2FO A 1 204 300 2FO ACM . F 5 HOH A 1 301 172 HOH HOH . F 5 HOH A 2 302 121 HOH HOH . F 5 HOH A 3 303 28 HOH HOH . F 5 HOH A 4 304 79 HOH HOH . F 5 HOH A 5 305 87 HOH HOH . F 5 HOH A 6 306 48 HOH HOH . F 5 HOH A 7 307 92 HOH HOH . F 5 HOH A 8 308 56 HOH HOH . F 5 HOH A 9 309 140 HOH HOH . F 5 HOH A 10 310 128 HOH HOH . F 5 HOH A 11 311 71 HOH HOH . F 5 HOH A 12 312 138 HOH HOH . F 5 HOH A 13 313 64 HOH HOH . F 5 HOH A 14 314 116 HOH HOH . F 5 HOH A 15 315 20 HOH HOH . F 5 HOH A 16 316 50 HOH HOH . F 5 HOH A 17 317 40 HOH HOH . F 5 HOH A 18 318 136 HOH HOH . F 5 HOH A 19 319 108 HOH HOH . F 5 HOH A 20 320 8 HOH HOH . F 5 HOH A 21 321 12 HOH HOH . F 5 HOH A 22 322 27 HOH HOH . F 5 HOH A 23 323 113 HOH HOH . F 5 HOH A 24 324 75 HOH HOH . F 5 HOH A 25 325 95 HOH HOH . F 5 HOH A 26 326 82 HOH HOH . F 5 HOH A 27 327 41 HOH HOH . F 5 HOH A 28 328 51 HOH HOH . F 5 HOH A 29 329 153 HOH HOH . F 5 HOH A 30 330 65 HOH HOH . F 5 HOH A 31 331 154 HOH HOH . F 5 HOH A 32 332 1 HOH HOH . F 5 HOH A 33 333 96 HOH HOH . F 5 HOH A 34 334 30 HOH HOH . F 5 HOH A 35 335 125 HOH HOH . F 5 HOH A 36 336 69 HOH HOH . F 5 HOH A 37 337 132 HOH HOH . F 5 HOH A 38 338 142 HOH HOH . F 5 HOH A 39 339 160 HOH HOH . F 5 HOH A 40 340 78 HOH HOH . F 5 HOH A 41 341 106 HOH HOH . F 5 HOH A 42 342 61 HOH HOH . F 5 HOH A 43 343 88 HOH HOH . F 5 HOH A 44 344 21 HOH HOH . F 5 HOH A 45 345 6 HOH HOH . F 5 HOH A 46 346 7 HOH HOH . F 5 HOH A 47 347 18 HOH HOH . F 5 HOH A 48 348 72 HOH HOH . F 5 HOH A 49 349 53 HOH HOH . F 5 HOH A 50 350 22 HOH HOH . F 5 HOH A 51 351 94 HOH HOH . F 5 HOH A 52 352 67 HOH HOH . F 5 HOH A 53 353 26 HOH HOH . F 5 HOH A 54 354 134 HOH HOH . F 5 HOH A 55 355 74 HOH HOH . F 5 HOH A 56 356 31 HOH HOH . F 5 HOH A 57 357 25 HOH HOH . F 5 HOH A 58 358 57 HOH HOH . F 5 HOH A 59 359 29 HOH HOH . F 5 HOH A 60 360 52 HOH HOH . F 5 HOH A 61 361 16 HOH HOH . F 5 HOH A 62 362 99 HOH HOH . F 5 HOH A 63 363 55 HOH HOH . F 5 HOH A 64 364 14 HOH HOH . F 5 HOH A 65 365 80 HOH HOH . F 5 HOH A 66 366 63 HOH HOH . F 5 HOH A 67 367 124 HOH HOH . F 5 HOH A 68 368 19 HOH HOH . F 5 HOH A 69 369 3 HOH HOH . F 5 HOH A 70 370 4 HOH HOH . F 5 HOH A 71 371 68 HOH HOH . F 5 HOH A 72 372 9 HOH HOH . F 5 HOH A 73 373 173 HOH HOH . F 5 HOH A 74 374 10 HOH HOH . F 5 HOH A 75 375 83 HOH HOH . F 5 HOH A 76 376 11 HOH HOH . F 5 HOH A 77 377 62 HOH HOH . F 5 HOH A 78 378 13 HOH HOH . F 5 HOH A 79 379 135 HOH HOH . F 5 HOH A 80 380 38 HOH HOH . F 5 HOH A 81 381 60 HOH HOH . F 5 HOH A 82 382 15 HOH HOH . F 5 HOH A 83 383 98 HOH HOH . F 5 HOH A 84 384 44 HOH HOH . F 5 HOH A 85 385 58 HOH HOH . F 5 HOH A 86 386 24 HOH HOH . F 5 HOH A 87 387 23 HOH HOH . F 5 HOH A 88 388 5 HOH HOH . F 5 HOH A 89 389 35 HOH HOH . F 5 HOH A 90 390 36 HOH HOH . F 5 HOH A 91 391 39 HOH HOH . F 5 HOH A 92 392 85 HOH HOH . F 5 HOH A 93 393 119 HOH HOH . F 5 HOH A 94 394 54 HOH HOH . F 5 HOH A 95 395 32 HOH HOH . F 5 HOH A 96 396 163 HOH HOH . F 5 HOH A 97 397 17 HOH HOH . F 5 HOH A 98 398 115 HOH HOH . F 5 HOH A 99 399 93 HOH HOH . F 5 HOH A 100 400 151 HOH HOH . F 5 HOH A 101 401 97 HOH HOH . F 5 HOH A 102 402 131 HOH HOH . F 5 HOH A 103 403 103 HOH HOH . F 5 HOH A 104 404 91 HOH HOH . F 5 HOH A 105 405 86 HOH HOH . F 5 HOH A 106 406 84 HOH HOH . F 5 HOH A 107 407 100 HOH HOH . F 5 HOH A 108 408 81 HOH HOH . F 5 HOH A 109 409 37 HOH HOH . F 5 HOH A 110 410 89 HOH HOH . F 5 HOH A 111 411 146 HOH HOH . F 5 HOH A 112 412 156 HOH HOH . F 5 HOH A 113 413 165 HOH HOH . F 5 HOH A 114 414 90 HOH HOH . F 5 HOH A 115 415 169 HOH HOH . F 5 HOH A 116 416 158 HOH HOH . F 5 HOH A 117 417 70 HOH HOH . F 5 HOH A 118 418 126 HOH HOH . F 5 HOH A 119 419 49 HOH HOH . F 5 HOH A 120 420 2 HOH HOH . F 5 HOH A 121 421 34 HOH HOH . F 5 HOH A 122 422 77 HOH HOH . F 5 HOH A 123 423 114 HOH HOH . F 5 HOH A 124 424 129 HOH HOH . F 5 HOH A 125 425 133 HOH HOH . F 5 HOH A 126 426 130 HOH HOH . F 5 HOH A 127 427 174 HOH HOH . F 5 HOH A 128 428 164 HOH HOH . F 5 HOH A 129 429 43 HOH HOH . F 5 HOH A 130 430 175 HOH HOH . F 5 HOH A 131 431 109 HOH HOH . F 5 HOH A 132 432 171 HOH HOH . F 5 HOH A 133 433 66 HOH HOH . F 5 HOH A 134 434 118 HOH HOH . F 5 HOH A 135 435 46 HOH HOH . F 5 HOH A 136 436 110 HOH HOH . F 5 HOH A 137 437 102 HOH HOH . F 5 HOH A 138 438 123 HOH HOH . F 5 HOH A 139 439 155 HOH HOH . F 5 HOH A 140 440 159 HOH HOH . F 5 HOH A 141 441 176 HOH HOH . F 5 HOH A 142 442 42 HOH HOH . F 5 HOH A 143 443 139 HOH HOH . F 5 HOH A 144 444 144 HOH HOH . F 5 HOH A 145 445 107 HOH HOH . F 5 HOH A 146 446 59 HOH HOH . F 5 HOH A 147 447 104 HOH HOH . F 5 HOH A 148 448 177 HOH HOH . F 5 HOH A 149 449 162 HOH HOH . F 5 HOH A 150 450 152 HOH HOH . F 5 HOH A 151 451 47 HOH HOH . F 5 HOH A 152 452 122 HOH HOH . F 5 HOH A 153 453 141 HOH HOH . F 5 HOH A 154 454 127 HOH HOH . F 5 HOH A 155 455 161 HOH HOH . F 5 HOH A 156 456 45 HOH HOH . F 5 HOH A 157 457 112 HOH HOH . F 5 HOH A 158 458 111 HOH HOH . F 5 HOH A 159 459 101 HOH HOH . F 5 HOH A 160 460 147 HOH HOH . F 5 HOH A 161 461 117 HOH HOH . F 5 HOH A 162 462 73 HOH HOH . F 5 HOH A 163 463 137 HOH HOH . F 5 HOH A 164 464 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 2FO . . . E 4 -6.41 -25.168 6.994 0.8 20.52 ? O3 2FO 204 A 1 HETATM 2 C C6 2FO . . . E 4 -7.051 -25.612 5.999 0.8 21.27 ? C6 2FO 204 A 1 HETATM 3 O O4 2FO . . . E 4 -6.421 -26.055 4.973 0.8 24.51 ? O4 2FO 204 A 1 HETATM 4 C C2 2FO . A . E 4 -8.603 -25.629 6.137 0.45 29.54 ? C2 2FO 204 A 1 HETATM 5 C C2 2FO . B . E 4 -8.607 -25.558 6.047 0.35 29.55 ? C2 2FO 204 A 1 HETATM 6 C C 2FO . . . E 4 -9.246 -24.428 6.853 0.8 30.68 ? C 2FO 204 A 1 HETATM 7 C C1 2FO . . . E 4 -10.47 -23.429 6.511 0.8 34.54 ? C1 2FO 204 A 1 HETATM 8 O O1 2FO . . . E 4 -9.902 -22.55 5.737 0.8 35.46 ? O1 2FO 204 A 1 HETATM 9 O O 2FO . . . E 4 -11.785 -23.345 7.068 0.8 24.78 ? O 2FO 204 A 1 HETATM 10 N N 2FO . . . E 4 -8.705 -24.058 7.912 0.8 31.16 ? N 2FO 204 A 1 HETATM 11 C C3 2FO . A . E 4 -9.183 -26.703 5.67 0.45 31.55 ? C3 2FO 204 A 1 HETATM 12 C C3 2FO . B . E 4 -9.279 -26.46 5.394 0.35 31.34 ? C3 2FO 204 A 1 HETATM 13 C C4 2FO . A . E 4 -10.716 -27.046 5.673 0.45 33.29 ? C4 2FO 204 A 1 HETATM 14 C C4 2FO . B . E 4 -10.842 -26.45 5.413 0.35 32.34 ? C4 2FO 204 A 1 HETATM 15 C C5 2FO . A . E 4 -11.577 -26.679 6.639 0.45 33.79 ? C5 2FO 204 A 1 HETATM 16 C C5 2FO . B . E 4 -11.507 -27.195 6.315 0.35 32.33 ? C5 2FO 204 A 1 HETATM 17 O O2 2FO . A . E 4 -11.253 -25.908 7.76 0.45 24.24 ? O2 2FO 204 A 1 HETATM 18 O O2 2FO . B . E 4 -10.895 -28.012 7.266 0.35 24.31 ? O2 2FO 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #