data_6VIV # _model_server_result.job_id tiVncOaebW67_kbz0Ugttw _model_server_result.datetime_utc '2024-11-13 21:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6viv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6VIV # _exptl.entry_id 6VIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.512 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VIV _cell.length_a 89.706 _cell.length_b 89.706 _cell.length_c 133.118 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A OE2 GLU 120 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 B O02 QZM . A QZM 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 B O03 QZM . A QZM 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 B O01 QZM . A QZM 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 B O02 QZM . A QZM 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc10 E MN MN . A MN 204 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc11 E MN MN . A MN 204 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? # _chem_comp.formula 'C25 H28 N4 O7' _chem_comp.formula_weight 496.512 _chem_comp.id QZM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SJ000986192 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O07 C01 QZM sing 386 n n C01 C24 QZM doub 387 n y C01 C02 QZM sing 388 n y O06 C02 QZM sing 389 n n O06 C25 QZM sing 390 n n C24 C21 QZM sing 391 n y C02 C03 QZM doub 392 n y C21 C04 QZM doub 393 n y C03 C04 QZM sing 394 n y C04 C05 QZM sing 395 n n C05 C06 QZM sing 396 n n C23 C12 QZM sing 397 n n N04 C12 QZM sing 398 n n N04 C13 QZM sing 399 n n C06 N01 QZM sing 400 n n C12 C22 QZM sing 401 n n C12 C11 QZM sing 402 n n N01 C07 QZM sing 403 n n N03 C11 QZM doub 404 n n N03 C08 QZM sing 405 n n C07 O01 QZM doub 406 n n C07 C08 QZM sing 407 n n C11 N02 QZM sing 408 n n C13 O05 QZM doub 409 n n C13 O04 QZM sing 410 n n C08 C09 QZM doub 411 n n N02 C10 QZM sing 412 n n C09 C10 QZM sing 413 n n C09 O02 QZM sing 414 n n C10 O03 QZM doub 415 n n C03 H1 QZM sing 416 n n C05 H2 QZM sing 417 n n C06 H4 QZM sing 418 n n C21 H7 QZM sing 419 n n C22 H8 QZM sing 420 n n C22 H9 QZM sing 421 n n C22 H10 QZM sing 422 n n C23 H11 QZM sing 423 n n C23 H12 QZM sing 424 n n C23 H13 QZM sing 425 n n C24 H14 QZM sing 426 n n C25 H15 QZM sing 427 n n C25 H16 QZM sing 428 n n C25 H17 QZM sing 429 n n N01 H18 QZM sing 430 n n N04 H19 QZM sing 431 n n O02 H20 QZM sing 432 n n O07 H22 QZM sing 433 n n O04 C41 QZM sing 434 n n C41 C42 QZM sing 435 n n C42 C43 QZM sing 436 n y C43 C44 QZM doub 437 n y C44 C45 QZM sing 438 n y C45 C46 QZM doub 439 n y C46 C47 QZM sing 440 n y C47 C42 QZM doub 441 n y C05 H3 QZM sing 442 n n C06 H5 QZM sing 443 n n N02 H23 QZM sing 444 n n C41 H21 QZM sing 445 n n C41 H24 QZM sing 446 n n C43 H25 QZM sing 447 n n C44 H26 QZM sing 448 n n C45 H27 QZM sing 449 n n C46 H28 QZM sing 450 n n C47 H29 QZM sing 451 n n # _atom_sites.entry_id 6VIV _atom_sites.fract_transf_matrix[1][1] 0.011148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QZM A 1 201 201 QZM 192 . C 3 QQ4 A 1 202 202 QQ4 PVP . D 4 MN A 1 203 1 MN MN . E 4 MN A 1 204 2 MN MN . F 5 SO4 A 1 205 2 SO4 SO4 . G 6 HOH A 1 301 11 HOH HOH . G 6 HOH A 2 302 18 HOH HOH . G 6 HOH A 3 303 7 HOH HOH . G 6 HOH A 4 304 13 HOH HOH . G 6 HOH A 5 305 4 HOH HOH . G 6 HOH A 6 306 1 HOH HOH . G 6 HOH A 7 307 24 HOH HOH . G 6 HOH A 8 308 29 HOH HOH . G 6 HOH A 9 309 25 HOH HOH . G 6 HOH A 10 310 15 HOH HOH . G 6 HOH A 11 311 2 HOH HOH . G 6 HOH A 12 312 11 HOH HOH . G 6 HOH A 13 313 4 HOH HOH . G 6 HOH A 14 314 15 HOH HOH . G 6 HOH A 15 315 8 HOH HOH . G 6 HOH A 16 316 23 HOH HOH . G 6 HOH A 17 317 20 HOH HOH . G 6 HOH A 18 318 19 HOH HOH . G 6 HOH A 19 319 17 HOH HOH . G 6 HOH A 20 320 16 HOH HOH . G 6 HOH A 21 321 9 HOH HOH . G 6 HOH A 22 322 27 HOH HOH . G 6 HOH A 23 323 11 HOH HOH . G 6 HOH A 24 324 3 HOH HOH . G 6 HOH A 25 325 24 HOH HOH . G 6 HOH A 26 326 3 HOH HOH . G 6 HOH A 27 327 17 HOH HOH . G 6 HOH A 28 328 7 HOH HOH . G 6 HOH A 29 329 16 HOH HOH . G 6 HOH A 30 330 10 HOH HOH . G 6 HOH A 31 331 22 HOH HOH . G 6 HOH A 32 332 21 HOH HOH . G 6 HOH A 33 333 14 HOH HOH . G 6 HOH A 34 334 47 HOH HOH . G 6 HOH A 35 335 20 HOH HOH . G 6 HOH A 36 336 15 HOH HOH . G 6 HOH A 37 337 5 HOH HOH . G 6 HOH A 38 338 26 HOH HOH . G 6 HOH A 39 339 28 HOH HOH . G 6 HOH A 40 340 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QZM . . . B 2 4.604 31.249 10.889 1 126.72 ? C01 QZM 201 A 1 HETATM 2 C C02 QZM . . . B 2 4.042 32.439 11.395 1 129.48 ? C02 QZM 201 A 1 HETATM 3 C C03 QZM . . . B 2 2.908 32.365 12.2 1 119.74 ? C03 QZM 201 A 1 HETATM 4 C C04 QZM . . . B 2 2.347 31.137 12.505 1 124.74 ? C04 QZM 201 A 1 HETATM 5 C C05 QZM . . . B 2 1.088 31.109 13.398 1 113.75 ? C05 QZM 201 A 1 HETATM 6 C C06 QZM . . . B 2 1.338 31.918 14.693 1 114.07 ? C06 QZM 201 A 1 HETATM 7 C C07 QZM . . . B 2 2.962 30.226 15.705 1 104.64 ? C07 QZM 201 A 1 HETATM 8 C C08 QZM . . . B 2 4.391 29.889 16.228 1 96.07 ? C08 QZM 201 A 1 HETATM 9 C C09 QZM . . . B 2 4.581 29.465 17.539 1 83.86 ? C09 QZM 201 A 1 HETATM 10 C C10 QZM . . . B 2 5.931 29.156 18.035 1 73.67 ? C10 QZM 201 A 1 HETATM 11 C C11 QZM . . . B 2 6.793 29.707 15.83 1 99.88 ? C11 QZM 201 A 1 HETATM 12 C C12 QZM . . . B 2 7.934 29.882 14.835 1 97.82 ? C12 QZM 201 A 1 HETATM 13 C C13 QZM . . . B 2 7.701 32.165 15.859 1 103 ? C13 QZM 201 A 1 HETATM 14 C C21 QZM . . . B 2 2.906 29.964 12.006 1 114.08 ? C21 QZM 201 A 1 HETATM 15 C C22 QZM . . . B 2 9.252 29.304 15.362 1 74.9 ? C22 QZM 201 A 1 HETATM 16 C C23 QZM . . . B 2 7.524 29.185 13.528 1 90.83 ? C23 QZM 201 A 1 HETATM 17 C C24 QZM . . . B 2 4.034 30.019 11.199 1 103.11 ? C24 QZM 201 A 1 HETATM 18 C C25 QZM . . . B 2 4.149 34.742 11.97 1 96.35 ? C25 QZM 201 A 1 HETATM 19 N N01 QZM . . . B 2 2.688 31.584 15.199 1 121.4 ? N01 QZM 201 A 1 HETATM 20 N N02 QZM . . . B 2 7.013 29.281 17.202 1 83.55 ? N02 QZM 201 A 1 HETATM 21 N N03 QZM . . . B 2 5.496 30.014 15.371 1 94.9 ? N03 QZM 201 A 1 HETATM 22 N N04 QZM . . . B 2 8.027 31.345 14.671 1 106.31 ? N04 QZM 201 A 1 HETATM 23 O O01 QZM . . . B 2 2.091 29.419 15.714 1 84.75 ? O01 QZM 201 A 1 HETATM 24 O O02 QZM . . . B 2 3.455 29.345 18.351 1 81.84 ? O02 QZM 201 A 1 HETATM 25 O O03 QZM . . . B 2 6.133 28.728 19.348 1 61.37 ? O03 QZM 201 A 1 HETATM 26 O O04 QZM . . . B 2 8.564 32.431 16.635 1 108.1 ? O04 QZM 201 A 1 HETATM 27 O O05 QZM . . . B 2 6.376 32.62 16.098 1 87.2 ? O05 QZM 201 A 1 HETATM 28 O O06 QZM . . . B 2 4.578 33.711 11.116 1 121.65 ? O06 QZM 201 A 1 HETATM 29 O O07 QZM . . . B 2 5.753 31.272 10.066 1 124.93 ? O07 QZM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #