data_6VJ6
#
_model_server_result.job_id            lIKDO4SbEaT9XtEG0dDaTg 
_model_server_result.datetime_utc      '2024-11-09 02:25:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    6VJ6 
#
_exptl.entry_id    6VJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.749 
_cell.angle_gamma         90 
_cell.entry_id            6VJ6 
_cell.length_a            151.425 
_cell.length_b            70.358 
_cell.length_c            79.357 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1,2 
B,F,H 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -2.42206 0 79.320029 
3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 34 A GLU 56 1_555 A N MSE 35 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 35 A MSE 57 1_555 A N VAL 36 A VAL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale3 A C LYS 62 A LYS 84 1_555 A N MSE 63 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 A C MSE 63 A MSE 85 1_555 A N GLY 64 A GLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 A C TYR 70 A TYR 92 1_555 A N MSE 71 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 A C MSE 71 A MSE 93 1_555 A N GLU 72 A GLU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale7 A C GLY 165 A GLY 187 1_555 A N MSE 166 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 A C MSE 166 A MSE 188 1_555 A N MSE 167 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale9 A C MSE 167 A MSE 189 1_555 A N VAL 168 A VAL 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale10 B C GLU 34 B GLU 56 1_555 B N MSE 35 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 B C MSE 35 B MSE 57 1_555 B N VAL 36 B VAL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale12 B C LYS 62 B LYS 84 1_555 B N MSE 63 B MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale13 B C MSE 63 B MSE 85 1_555 B N GLY 64 B GLY 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale14 B C TYR 70 B TYR 92 1_555 B N MSE 71 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale15 B C MSE 71 B MSE 93 1_555 B N GLU 72 B GLU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale16 B C GLY 165 B GLY 187 1_555 B N MSE 166 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale17 B C MSE 166 B MSE 188 1_555 B N MSE 167 B MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale18 B C MSE 167 B MSE 189 1_555 B N VAL 168 B VAL 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     6VJ6 
_atom_sites.fract_transf_matrix[1][1]    0.006604 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000202 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014213 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2NV A 1 301 1 2NV 2NV . 
D 3 GOL A 1 302 3 GOL GOL . 
E 3 GOL A 1 303 4 GOL GOL . 
F 2 2NV B 1 301 2 2NV 2NV . 
G 4 HOH A 1 401 46 HOH HOH . 
G 4 HOH A 2 402 99 HOH HOH . 
G 4 HOH A 3 403 15 HOH HOH . 
G 4 HOH A 4 404 115 HOH HOH . 
G 4 HOH A 5 405 5 HOH HOH . 
G 4 HOH A 6 406 108 HOH HOH . 
G 4 HOH A 7 407 10 HOH HOH . 
G 4 HOH A 8 408 37 HOH HOH . 
G 4 HOH A 9 409 42 HOH HOH . 
G 4 HOH A 10 410 21 HOH HOH . 
G 4 HOH A 11 411 136 HOH HOH . 
G 4 HOH A 12 412 51 HOH HOH . 
G 4 HOH A 13 413 9 HOH HOH . 
G 4 HOH A 14 414 64 HOH HOH . 
G 4 HOH A 15 415 58 HOH HOH . 
G 4 HOH A 16 416 48 HOH HOH . 
G 4 HOH A 17 417 45 HOH HOH . 
G 4 HOH A 18 418 20 HOH HOH . 
G 4 HOH A 19 419 103 HOH HOH . 
G 4 HOH A 20 420 98 HOH HOH . 
G 4 HOH A 21 421 72 HOH HOH . 
G 4 HOH A 22 422 47 HOH HOH . 
G 4 HOH A 23 423 85 HOH HOH . 
G 4 HOH A 24 424 84 HOH HOH . 
G 4 HOH A 25 425 25 HOH HOH . 
G 4 HOH A 26 426 39 HOH HOH . 
G 4 HOH A 27 427 101 HOH HOH . 
G 4 HOH A 28 428 142 HOH HOH . 
G 4 HOH A 29 429 141 HOH HOH . 
G 4 HOH A 30 430 49 HOH HOH . 
G 4 HOH A 31 431 56 HOH HOH . 
G 4 HOH A 32 432 79 HOH HOH . 
G 4 HOH A 33 433 75 HOH HOH . 
G 4 HOH A 34 434 130 HOH HOH . 
G 4 HOH A 35 435 94 HOH HOH . 
G 4 HOH A 36 436 120 HOH HOH . 
G 4 HOH A 37 437 36 HOH HOH . 
G 4 HOH A 38 438 34 HOH HOH . 
G 4 HOH A 39 439 12 HOH HOH . 
G 4 HOH A 40 440 134 HOH HOH . 
G 4 HOH A 41 441 22 HOH HOH . 
G 4 HOH A 42 442 19 HOH HOH . 
G 4 HOH A 43 443 125 HOH HOH . 
G 4 HOH A 44 444 66 HOH HOH . 
G 4 HOH A 45 445 41 HOH HOH . 
G 4 HOH A 46 446 40 HOH HOH . 
G 4 HOH A 47 447 11 HOH HOH . 
G 4 HOH A 48 448 87 HOH HOH . 
G 4 HOH A 49 449 71 HOH HOH . 
G 4 HOH A 50 450 159 HOH HOH . 
G 4 HOH A 51 451 104 HOH HOH . 
G 4 HOH A 52 452 17 HOH HOH . 
G 4 HOH A 53 453 18 HOH HOH . 
G 4 HOH A 54 454 97 HOH HOH . 
G 4 HOH A 55 455 77 HOH HOH . 
G 4 HOH A 56 456 53 HOH HOH . 
G 4 HOH A 57 457 33 HOH HOH . 
G 4 HOH A 58 458 38 HOH HOH . 
G 4 HOH A 59 459 135 HOH HOH . 
G 4 HOH A 60 460 57 HOH HOH . 
G 4 HOH A 61 461 122 HOH HOH . 
G 4 HOH A 62 462 143 HOH HOH . 
G 4 HOH A 63 463 63 HOH HOH . 
G 4 HOH A 64 464 91 HOH HOH . 
G 4 HOH A 65 465 96 HOH HOH . 
G 4 HOH A 66 466 83 HOH HOH . 
G 4 HOH A 67 467 132 HOH HOH . 
G 4 HOH A 68 468 116 HOH HOH . 
G 4 HOH A 69 469 59 HOH HOH . 
G 4 HOH A 70 470 100 HOH HOH . 
G 4 HOH A 71 471 23 HOH HOH . 
G 4 HOH A 72 472 117 HOH HOH . 
G 4 HOH A 73 473 124 HOH HOH . 
G 4 HOH A 74 474 93 HOH HOH . 
G 4 HOH A 75 475 127 HOH HOH . 
G 4 HOH A 76 476 73 HOH HOH . 
G 4 HOH A 77 477 88 HOH HOH . 
G 4 HOH A 78 478 89 HOH HOH . 
G 4 HOH A 79 479 128 HOH HOH . 
G 4 HOH A 80 480 112 HOH HOH . 
G 4 HOH A 81 481 44 HOH HOH . 
G 4 HOH A 82 482 106 HOH HOH . 
G 4 HOH A 83 483 133 HOH HOH . 
G 4 HOH A 84 484 123 HOH HOH . 
G 4 HOH A 85 485 111 HOH HOH . 
G 4 HOH A 86 486 109 HOH HOH . 
G 4 HOH A 87 487 157 HOH HOH . 
H 4 HOH B 1 401 70 HOH HOH . 
H 4 HOH B 2 402 31 HOH HOH . 
H 4 HOH B 3 403 8 HOH HOH . 
H 4 HOH B 4 404 102 HOH HOH . 
H 4 HOH B 5 405 158 HOH HOH . 
H 4 HOH B 6 406 67 HOH HOH . 
H 4 HOH B 7 407 7 HOH HOH . 
H 4 HOH B 8 408 82 HOH HOH . 
H 4 HOH B 9 409 27 HOH HOH . 
H 4 HOH B 10 410 6 HOH HOH . 
H 4 HOH B 11 411 145 HOH HOH . 
H 4 HOH B 12 412 160 HOH HOH . 
H 4 HOH B 13 413 137 HOH HOH . 
H 4 HOH B 14 414 50 HOH HOH . 
H 4 HOH B 15 415 69 HOH HOH . 
H 4 HOH B 16 416 52 HOH HOH . 
H 4 HOH B 17 417 90 HOH HOH . 
H 4 HOH B 18 418 138 HOH HOH . 
H 4 HOH B 19 419 28 HOH HOH . 
H 4 HOH B 20 420 78 HOH HOH . 
H 4 HOH B 21 421 16 HOH HOH . 
H 4 HOH B 22 422 14 HOH HOH . 
H 4 HOH B 23 423 55 HOH HOH . 
H 4 HOH B 24 424 150 HOH HOH . 
H 4 HOH B 25 425 74 HOH HOH . 
H 4 HOH B 26 426 146 HOH HOH . 
H 4 HOH B 27 427 119 HOH HOH . 
H 4 HOH B 28 428 121 HOH HOH . 
H 4 HOH B 29 429 65 HOH HOH . 
H 4 HOH B 30 430 131 HOH HOH . 
H 4 HOH B 31 431 62 HOH HOH . 
H 4 HOH B 32 432 30 HOH HOH . 
H 4 HOH B 33 433 13 HOH HOH . 
H 4 HOH B 34 434 24 HOH HOH . 
H 4 HOH B 35 435 81 HOH HOH . 
H 4 HOH B 36 436 86 HOH HOH . 
H 4 HOH B 37 437 153 HOH HOH . 
H 4 HOH B 38 438 60 HOH HOH . 
H 4 HOH B 39 439 147 HOH HOH . 
H 4 HOH B 40 440 43 HOH HOH . 
H 4 HOH B 41 441 154 HOH HOH . 
H 4 HOH B 42 442 29 HOH HOH . 
H 4 HOH B 43 443 26 HOH HOH . 
H 4 HOH B 44 444 129 HOH HOH . 
H 4 HOH B 45 445 54 HOH HOH . 
H 4 HOH B 46 446 92 HOH HOH . 
H 4 HOH B 47 447 95 HOH HOH . 
H 4 HOH B 48 448 113 HOH HOH . 
H 4 HOH B 49 449 144 HOH HOH . 
H 4 HOH B 50 450 32 HOH HOH . 
H 4 HOH B 51 451 61 HOH HOH . 
H 4 HOH B 52 452 156 HOH HOH . 
H 4 HOH B 53 453 76 HOH HOH . 
H 4 HOH B 54 454 68 HOH HOH . 
H 4 HOH B 55 455 80 HOH HOH . 
H 4 HOH B 56 456 152 HOH HOH . 
H 4 HOH B 57 457 155 HOH HOH . 
H 4 HOH B 58 458 35 HOH HOH . 
H 4 HOH B 59 459 151 HOH HOH . 
H 4 HOH B 60 460 118 HOH HOH . 
H 4 HOH B 61 461 107 HOH HOH . 
H 4 HOH B 62 462 149 HOH HOH . 
H 4 HOH B 63 463 139 HOH HOH . 
H 4 HOH B 64 464 105 HOH HOH . 
H 4 HOH B 65 465 161 HOH HOH . 
H 4 HOH B 66 466 126 HOH HOH . 
H 4 HOH B 67 467 114 HOH HOH . 
H 4 HOH B 68 468 110 HOH HOH . 
H 4 HOH B 69 469 140 HOH HOH . 
H 4 HOH B 70 470 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 6.207 26.423 44.032 1 109.9 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . E 3 6.686 26.582 42.699 1 104.31 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . E 3 4.801 26.964 44.187 1 112.33 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . E 3 4.363 26.783 45.534 1 117.21 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . E 3 3.817 26.323 43.23 1 104.49 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . E 3 2.47 26.687 43.522 1 94.38 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#