data_6VJA
#
_model_server_result.job_id            c7jliA_zA-DgLuPJpA2GTg 
_model_server_result.datetime_utc      '2025-01-08 04:29:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1002}' 
#
_entry.id    6VJA 
#
_exptl.entry_id    6VJA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VJA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 C CYS 167 1_555 A SG CYS 146 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 130 D CYS 167 1_555 B SG CYS 146 D CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 148 H CYS 140 1_555 C SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 C SG CYS 224 H CYS 216 1_555 E SG CYS 213 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 D SG CYS 22 I CYS 22 1_555 D SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 148 I CYS 140 1_555 D SG CYS 204 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 224 I CYS 216 1_555 F SG CYS 213 M CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 23 L CYS 23 1_555 E SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf10 E SG CYS 133 L CYS 134 1_555 E SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf11 F SG CYS 133 M CYS 134 1_555 F SG CYS 193 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     6VJA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 Y01 C 1 1001 1001 Y01 Y01 . 
H 4 Y01 C 1 1002 1002 Y01 Y01 . 
I 4 Y01 C 1 1003 1000 Y01 Y01 . 
J 4 Y01 D 1 401 1000 Y01 Y01 . 
K 4 Y01 D 1 402 1002 Y01 Y01 . 
L 4 Y01 D 1 403 1001 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . H 4 135.326 165.213 181.514 1 162.8 ? CAA Y01 1002 C 1 
HETATM 2 C CBA Y01 . . . H 4 136.752 165.567 181.918 1 162.8 ? CBA Y01 1002 C 1 
HETATM 3 C CAB Y01 . . . H 4 137.704 164.593 181.226 1 162.8 ? CAB Y01 1002 C 1 
HETATM 4 C CAN Y01 . . . H 4 136.863 165.415 183.433 1 162.8 ? CAN Y01 1002 C 1 
HETATM 5 C CAJ Y01 . . . H 4 135.701 166.168 184.08 1 162.8 ? CAJ Y01 1002 C 1 
HETATM 6 C CAO Y01 . . . H 4 135.956 166.314 185.575 1 162.8 ? CAO Y01 1002 C 1 
HETATM 7 C CBB Y01 . . . H 4 134.753 166.966 186.258 1 162.8 ? CBB Y01 1002 C 1 
HETATM 8 C CAC Y01 . . . H 4 133.559 166.02 186.117 1 162.8 ? CAC Y01 1002 C 1 
HETATM 9 C CBE Y01 . . . H 4 135.168 167.201 187.714 1 162.8 ? CBE Y01 1002 C 1 
HETATM 10 C CAP Y01 . . . H 4 136.422 168.102 187.66 1 162.8 ? CAP Y01 1002 C 1 
HETATM 11 C CAQ Y01 . . . H 4 136.327 169.077 188.858 1 162.8 ? CAQ Y01 1002 C 1 
HETATM 12 C CBG Y01 . . . H 4 135.138 168.55 189.665 1 162.8 ? CBG Y01 1002 C 1 
HETATM 13 C CBI Y01 . . . H 4 134.189 168 188.57 1 162.8 ? CBI Y01 1002 C 1 
HETATM 14 C CAE Y01 . . . H 4 133.62 169.149 187.741 1 162.8 ? CAE Y01 1002 C 1 
HETATM 15 C CAU Y01 . . . H 4 133.097 167.233 189.304 1 162.8 ? CAU Y01 1002 C 1 
HETATM 16 C CAS Y01 . . . H 4 132.359 168.131 190.315 1 162.8 ? CAS Y01 1002 C 1 
HETATM 17 C CBF Y01 . . . H 4 133.27 168.938 191.241 1 162.8 ? CBF Y01 1002 C 1 
HETATM 18 C CBD Y01 . . . H 4 134.41 169.609 190.466 1 162.8 ? CBD Y01 1002 C 1 
HETATM 19 C CAK Y01 . . . H 4 135.405 170.21 191.465 1 162.8 ? CAK Y01 1002 C 1 
HETATM 20 C CAI Y01 . . . H 4 134.668 171.068 192.447 1 162.8 ? CAI Y01 1002 C 1 
HETATM 21 C CAZ Y01 . . . H 4 133.382 171.025 192.627 1 162.8 ? CAZ Y01 1002 C 1 
HETATM 22 C CAV Y01 . . . H 4 132.779 172.04 193.574 1 162.8 ? CAV Y01 1002 C 1 
HETATM 23 C CBH Y01 . . . H 4 132.486 170.004 192.002 1 162.8 ? CBH Y01 1002 C 1 
HETATM 24 C CAD Y01 . . . H 4 131.57 170.748 191.031 1 162.8 ? CAD Y01 1002 C 1 
HETATM 25 C CAT Y01 . . . H 4 131.579 169.367 193.055 1 162.8 ? CAT Y01 1002 C 1 
HETATM 26 C CAR Y01 . . . H 4 130.866 170.419 193.91 1 162.8 ? CAR Y01 1002 C 1 
HETATM 27 C CBC Y01 . . . H 4 131.833 171.397 194.583 1 162.8 ? CBC Y01 1002 C 1 
HETATM 28 O OAW Y01 . . . H 4 131.082 172.489 195.179 1 162.8 ? OAW Y01 1002 C 1 
HETATM 29 C CAY Y01 . . . H 4 130.8 172.478 196.494 1 162.8 ? CAY Y01 1002 C 1 
HETATM 30 O OAG Y01 . . . H 4 130.019 173.301 196.91 1 162.8 ? OAG Y01 1002 C 1 
HETATM 31 C CAM Y01 . . . H 4 131.448 171.447 197.396 1 162.8 ? CAM Y01 1002 C 1 
HETATM 32 C CAL Y01 . . . H 4 131.502 171.827 198.881 1 162.8 ? CAL Y01 1002 C 1 
HETATM 33 C CAX Y01 . . . H 4 130.131 172.083 199.444 1 162.8 ? CAX Y01 1002 C 1 
HETATM 34 O OAH Y01 . . . H 4 129.121 171.261 199.136 1 162.8 ? OAH Y01 1002 C 1 
HETATM 35 O OAF Y01 . . . H 4 129.942 173.027 200.17 1 162.8 ? OAF Y01 1002 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#