data_6VJA # _model_server_result.job_id Y0K9eHk-Uppl_IjxZEnSvA _model_server_result.datetime_utc '2024-11-04 22:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1003}' # _entry.id 6VJA # _exptl.entry_id 6VJA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VJA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 C CYS 167 1_555 A SG CYS 146 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 130 D CYS 167 1_555 B SG CYS 146 D CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 148 H CYS 140 1_555 C SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 C SG CYS 224 H CYS 216 1_555 E SG CYS 213 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 D SG CYS 22 I CYS 22 1_555 D SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 148 I CYS 140 1_555 D SG CYS 204 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 224 I CYS 216 1_555 F SG CYS 213 M CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 23 L CYS 23 1_555 E SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf10 E SG CYS 133 L CYS 134 1_555 E SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf11 F SG CYS 133 M CYS 134 1_555 F SG CYS 193 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6VJA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 C 1 1001 1001 Y01 Y01 . H 4 Y01 C 1 1002 1002 Y01 Y01 . I 4 Y01 C 1 1003 1000 Y01 Y01 . J 4 Y01 D 1 401 1000 Y01 Y01 . K 4 Y01 D 1 402 1002 Y01 Y01 . L 4 Y01 D 1 403 1001 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 4 155.555 143.905 171.917 1 142.18 ? CAA Y01 1003 C 1 HETATM 2 C CBA Y01 . . . I 4 155.514 145.411 171.667 1 142.18 ? CBA Y01 1003 C 1 HETATM 3 C CAB Y01 . . . I 4 155.005 146.065 172.947 1 142.18 ? CAB Y01 1003 C 1 HETATM 4 C CAN Y01 . . . I 4 154.484 145.691 170.582 1 142.18 ? CAN Y01 1003 C 1 HETATM 5 C CAJ Y01 . . . I 4 155.023 145.208 169.237 1 142.18 ? CAJ Y01 1003 C 1 HETATM 6 C CAO Y01 . . . I 4 154.006 145.546 168.146 1 142.18 ? CAO Y01 1003 C 1 HETATM 7 C CBB Y01 . . . I 4 154.646 145.727 166.77 1 142.18 ? CBB Y01 1003 C 1 HETATM 8 C CAC Y01 . . . I 4 156.125 146.049 166.913 1 142.18 ? CAC Y01 1003 C 1 HETATM 9 C CBE Y01 . . . I 4 154.519 144.428 165.976 1 142.18 ? CBE Y01 1003 C 1 HETATM 10 C CAP Y01 . . . I 4 153.383 143.554 166.546 1 142.18 ? CAP Y01 1003 C 1 HETATM 11 C CAQ Y01 . . . I 4 152.628 142.945 165.337 1 142.18 ? CAQ Y01 1003 C 1 HETATM 12 C CBG Y01 . . . I 4 153.473 143.345 164.127 1 142.18 ? CBG Y01 1003 C 1 HETATM 13 C CBI Y01 . . . I 4 154.058 144.706 164.558 1 142.18 ? CBI Y01 1003 C 1 HETATM 14 C CAE Y01 . . . I 4 152.958 145.763 164.573 1 142.18 ? CAE Y01 1003 C 1 HETATM 15 C CAU Y01 . . . I 4 155.14 145.042 163.557 1 142.18 ? CAU Y01 1003 C 1 HETATM 16 C CAS Y01 . . . I 4 154.548 145.071 162.141 1 142.18 ? CAS Y01 1003 C 1 HETATM 17 C CBF Y01 . . . I 4 153.769 143.815 161.784 1 142.18 ? CBF Y01 1003 C 1 HETATM 18 C CBD Y01 . . . I 4 152.705 143.581 162.848 1 142.18 ? CBD Y01 1003 C 1 HETATM 19 C CAK Y01 . . . I 4 151.891 142.324 162.535 1 142.18 ? CAK Y01 1003 C 1 HETATM 20 C CAI Y01 . . . I 4 151.492 142.292 161.09 1 142.18 ? CAI Y01 1003 C 1 HETATM 21 C CAZ Y01 . . . I 4 152.006 143.046 160.171 1 142.18 ? CAZ Y01 1003 C 1 HETATM 22 C CAV Y01 . . . I 4 151.457 142.926 158.767 1 142.18 ? CAV Y01 1003 C 1 HETATM 23 C CBH Y01 . . . I 4 153.172 143.934 160.396 1 142.18 ? CBH Y01 1003 C 1 HETATM 24 C CAD Y01 . . . I 4 152.676 145.354 160.163 1 142.18 ? CAD Y01 1003 C 1 HETATM 25 C CAT Y01 . . . I 4 154.262 143.622 159.38 1 142.18 ? CAT Y01 1003 C 1 HETATM 26 C CAR Y01 . . . I 4 153.734 143.642 157.952 1 142.18 ? CAR Y01 1003 C 1 HETATM 27 C CBC Y01 . . . I 4 152.554 142.704 157.732 1 142.18 ? CBC Y01 1003 C 1 HETATM 28 O OAW Y01 . . . I 4 151.986 143.006 156.433 1 142.18 ? OAW Y01 1003 C 1 HETATM 29 C CAY Y01 . . . I 4 151.689 142.002 155.593 1 142.18 ? CAY Y01 1003 C 1 HETATM 30 O OAG Y01 . . . I 4 151.882 140.864 155.925 1 142.18 ? OAG Y01 1003 C 1 HETATM 31 C CAM Y01 . . . I 4 151.109 142.315 154.241 1 142.18 ? CAM Y01 1003 C 1 HETATM 32 C CAL Y01 . . . I 4 151.007 141.073 153.355 1 142.18 ? CAL Y01 1003 C 1 HETATM 33 C CAX Y01 . . . I 4 150.006 140.09 153.897 1 142.18 ? CAX Y01 1003 C 1 HETATM 34 O OAH Y01 . . . I 4 150.402 138.862 154.252 1 142.18 ? OAH Y01 1003 C 1 HETATM 35 O OAF Y01 . . . I 4 148.85 140.411 154.018 1 142.18 ? OAF Y01 1003 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #