data_6VJA
#
_model_server_result.job_id            Soofcx8WEEIKWa6-NCVFeA 
_model_server_result.datetime_utc      '2024-11-04 22:37:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    6VJA 
#
_exptl.entry_id    6VJA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VJA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 C CYS 167 1_555 A SG CYS 146 C CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 130 D CYS 167 1_555 B SG CYS 146 D CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 148 H CYS 140 1_555 C SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 C SG CYS 224 H CYS 216 1_555 E SG CYS 213 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 D SG CYS 22 I CYS 22 1_555 D SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 148 I CYS 140 1_555 D SG CYS 204 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 224 I CYS 216 1_555 F SG CYS 213 M CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 23 L CYS 23 1_555 E SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf10 E SG CYS 133 L CYS 134 1_555 E SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf11 F SG CYS 133 M CYS 134 1_555 F SG CYS 193 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6VJA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 Y01 C 1 1001 1001 Y01 Y01 . 
H 4 Y01 C 1 1002 1002 Y01 Y01 . 
I 4 Y01 C 1 1003 1000 Y01 Y01 . 
J 4 Y01 D 1 401 1000 Y01 Y01 . 
K 4 Y01 D 1 402 1002 Y01 Y01 . 
L 4 Y01 D 1 403 1001 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . K 4 171.652 144.53 180.316 1 162.41 ? CAA Y01 402 D 1 
HETATM 2 C CBA Y01 . . . K 4 172.505 145.034 181.474 1 162.41 ? CBA Y01 402 D 1 
HETATM 3 C CAB Y01 . . . K 4 172.799 146.504 181.197 1 162.41 ? CAB Y01 402 D 1 
HETATM 4 C CAN Y01 . . . K 4 173.821 144.267 181.439 1 162.41 ? CAN Y01 402 D 1 
HETATM 5 C CAJ Y01 . . . K 4 174.648 144.512 182.697 1 162.41 ? CAJ Y01 402 D 1 
HETATM 6 C CAO Y01 . . . K 4 173.974 144.006 183.972 1 162.41 ? CAO Y01 402 D 1 
HETATM 7 C CBB Y01 . . . K 4 175.104 143.67 184.956 1 162.41 ? CBB Y01 402 D 1 
HETATM 8 C CAC Y01 . . . K 4 176.12 144.821 184.918 1 162.41 ? CAC Y01 402 D 1 
HETATM 9 C CBE Y01 . . . K 4 174.54 143.4 186.365 1 162.41 ? CBE Y01 402 D 1 
HETATM 10 C CAP Y01 . . . K 4 173.454 142.306 186.259 1 162.41 ? CAP Y01 402 D 1 
HETATM 11 C CAQ Y01 . . . K 4 173.592 141.377 187.497 1 162.41 ? CAQ Y01 402 D 1 
HETATM 12 C CBG Y01 . . . K 4 174.653 142.059 188.364 1 162.41 ? CBG Y01 402 D 1 
HETATM 13 C CBI Y01 . . . K 4 175.553 142.784 187.328 1 162.41 ? CBI Y01 402 D 1 
HETATM 14 C CAE Y01 . . . K 4 176.421 141.767 186.587 1 162.41 ? CAE Y01 402 D 1 
HETATM 15 C CAU Y01 . . . K 4 176.407 143.749 188.131 1 162.41 ? CAU Y01 402 D 1 
HETATM 16 C CAS Y01 . . . K 4 177.234 143.006 189.187 1 162.41 ? CAS Y01 402 D 1 
HETATM 17 C CBF Y01 . . . K 4 176.413 142.059 190.054 1 162.41 ? CBF Y01 402 D 1 
HETATM 18 C CBD Y01 . . . K 4 175.551 141.146 189.178 1 162.41 ? CBD Y01 402 D 1 
HETATM 19 C CAK Y01 . . . K 4 174.716 140.199 190.053 1 162.41 ? CAK Y01 402 D 1 
HETATM 20 C CAI Y01 . . . K 4 175.599 139.516 191.058 1 162.41 ? CAI Y01 402 D 1 
HETATM 21 C CAZ Y01 . . . K 4 176.786 139.941 191.383 1 162.41 ? CAZ Y01 402 D 1 
HETATM 22 C CAV Y01 . . . K 4 177.607 139.122 192.366 1 162.41 ? CAV Y01 402 D 1 
HETATM 23 C CBH Y01 . . . K 4 177.352 141.254 190.931 1 162.41 ? CBH Y01 402 D 1 
HETATM 24 C CAD Y01 . . . K 4 178.636 140.969 190.148 1 162.41 ? CAD Y01 402 D 1 
HETATM 25 C CAT Y01 . . . K 4 177.753 142.108 192.132 1 162.41 ? CAT Y01 402 D 1 
HETATM 26 C CAR Y01 . . . K 4 178.659 141.325 193.081 1 162.41 ? CAR Y01 402 D 1 
HETATM 27 C CBC Y01 . . . K 4 178.051 139.997 193.542 1 162.41 ? CBC Y01 402 D 1 
HETATM 28 O OAW Y01 . . . K 4 179.066 139.34 194.349 1 162.41 ? OAW Y01 402 D 1 
HETATM 29 C CAY Y01 . . . K 4 178.743 138.265 195.088 1 162.41 ? CAY Y01 402 D 1 
HETATM 30 O OAG Y01 . . . K 4 177.612 137.84 195.107 1 162.41 ? OAG Y01 402 D 1 
HETATM 31 C CAM Y01 . . . K 4 179.792 137.634 195.971 1 162.41 ? CAM Y01 402 D 1 
HETATM 32 C CAL Y01 . . . K 4 179.398 136.194 196.298 1 162.41 ? CAL Y01 402 D 1 
HETATM 33 C CAX Y01 . . . K 4 179.405 135.411 195.015 1 162.41 ? CAX Y01 402 D 1 
HETATM 34 O OAH Y01 . . . K 4 178.263 134.916 194.511 1 162.41 ? OAH Y01 402 D 1 
HETATM 35 O OAF Y01 . . . K 4 180.455 135.227 194.447 1 162.41 ? OAF Y01 402 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#