data_6VJH # _model_server_result.job_id xxp8YXPQTPp1gnin0-2Qiw _model_server_result.datetime_utc '2024-11-16 06:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6VJH # _exptl.entry_id 6VJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.512 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VJH _cell.length_a 88.971 _cell.length_b 88.971 _cell.length_c 133.396 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc7 B O02 QZM . A QZM 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 B O03 QZM . A QZM 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 B O01 QZM . A QZM 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc10 B O02 QZM . A QZM 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc11 E MN MN . A MN 204 1_555 F O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 E MN MN . A MN 204 1_555 F O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C25 H28 N4 O7' _chem_comp.formula_weight 496.512 _chem_comp.id QZM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SJ000986192 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O07 C01 QZM sing 386 n n C01 C24 QZM doub 387 n y C01 C02 QZM sing 388 n y O06 C02 QZM sing 389 n n O06 C25 QZM sing 390 n n C24 C21 QZM sing 391 n y C02 C03 QZM doub 392 n y C21 C04 QZM doub 393 n y C03 C04 QZM sing 394 n y C04 C05 QZM sing 395 n n C05 C06 QZM sing 396 n n C23 C12 QZM sing 397 n n N04 C12 QZM sing 398 n n N04 C13 QZM sing 399 n n C06 N01 QZM sing 400 n n C12 C22 QZM sing 401 n n C12 C11 QZM sing 402 n n N01 C07 QZM sing 403 n n N03 C11 QZM doub 404 n n N03 C08 QZM sing 405 n n C07 O01 QZM doub 406 n n C07 C08 QZM sing 407 n n C11 N02 QZM sing 408 n n C13 O05 QZM doub 409 n n C13 O04 QZM sing 410 n n C08 C09 QZM doub 411 n n N02 C10 QZM sing 412 n n C09 C10 QZM sing 413 n n C09 O02 QZM sing 414 n n C10 O03 QZM doub 415 n n C03 H1 QZM sing 416 n n C05 H2 QZM sing 417 n n C06 H4 QZM sing 418 n n C21 H7 QZM sing 419 n n C22 H8 QZM sing 420 n n C22 H9 QZM sing 421 n n C22 H10 QZM sing 422 n n C23 H11 QZM sing 423 n n C23 H12 QZM sing 424 n n C23 H13 QZM sing 425 n n C24 H14 QZM sing 426 n n C25 H15 QZM sing 427 n n C25 H16 QZM sing 428 n n C25 H17 QZM sing 429 n n N01 H18 QZM sing 430 n n N04 H19 QZM sing 431 n n O02 H20 QZM sing 432 n n O07 H22 QZM sing 433 n n O04 C41 QZM sing 434 n n C41 C42 QZM sing 435 n n C42 C43 QZM sing 436 n y C43 C44 QZM doub 437 n y C44 C45 QZM sing 438 n y C45 C46 QZM doub 439 n y C46 C47 QZM sing 440 n y C47 C42 QZM doub 441 n y C05 H3 QZM sing 442 n n C06 H5 QZM sing 443 n n N02 H23 QZM sing 444 n n C41 H21 QZM sing 445 n n C41 H24 QZM sing 446 n n C43 H25 QZM sing 447 n n C44 H26 QZM sing 448 n n C45 H27 QZM sing 449 n n C46 H28 QZM sing 450 n n C47 H29 QZM sing 451 n n # _atom_sites.entry_id 6VJH _atom_sites.fract_transf_matrix[1][1] 0.01124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QZM A 1 201 201 QZM 192 . C 3 QQ4 A 1 202 202 QQ4 PVP . D 4 MN A 1 203 1 MN MN . E 4 MN A 1 204 2 MN MN . F 5 HOH A 1 301 3 HOH HOH . F 5 HOH A 2 302 1 HOH HOH . F 5 HOH A 3 303 4 HOH HOH . F 5 HOH A 4 304 2 HOH HOH . F 5 HOH A 5 305 8 HOH HOH . F 5 HOH A 6 306 5 HOH HOH . F 5 HOH A 7 307 7 HOH HOH . F 5 HOH A 8 308 9 HOH HOH . F 5 HOH A 9 309 10 HOH HOH . F 5 HOH A 10 310 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QZM . . . B 2 12.17 39.156 -10.808 1 123 ? C01 QZM 201 A 1 HETATM 2 C C02 QZM . . . B 2 11.414 40.203 -11.315 1 111.78 ? C02 QZM 201 A 1 HETATM 3 C C03 QZM . . . B 2 12.053 41.346 -11.796 1 117.71 ? C03 QZM 201 A 1 HETATM 4 C C04 QZM . . . B 2 13.437 41.441 -11.778 1 116.19 ? C04 QZM 201 A 1 HETATM 5 C C05 QZM . . . B 2 14.129 42.718 -12.315 1 113.02 ? C05 QZM 201 A 1 HETATM 6 C C06 QZM . . . B 2 13.786 42.929 -13.807 1 109.46 ? C06 QZM 201 A 1 HETATM 7 C C07 QZM . . . B 2 14.643 41.447 -15.719 1 85.13 ? C07 QZM 201 A 1 HETATM 8 C C08 QZM . . . B 2 14.75 40.006 -16.293 1 89.1 ? C08 QZM 201 A 1 HETATM 9 C C09 QZM . . . B 2 15.317 39.733 -17.533 1 67.26 ? C09 QZM 201 A 1 HETATM 10 C C10 QZM . . . B 2 15.382 38.353 -18.002 1 69.69 ? C10 QZM 201 A 1 HETATM 11 C C11 QZM . . . B 2 14.355 37.609 -15.965 1 94.83 ? C11 QZM 201 A 1 HETATM 12 C C12 QZM . . . B 2 13.815 36.473 -15.108 1 93.61 ? C12 QZM 201 A 1 HETATM 13 C C13 QZM . . . B 2 11.847 36.874 -16.634 1 96.5 ? C13 QZM 201 A 1 HETATM 14 C C21 QZM . . . B 2 14.186 40.391 -11.27 1 103.17 ? C21 QZM 201 A 1 HETATM 15 C C22 QZM . . . B 2 14.473 35.145 -15.468 1 91.32 ? C22 QZM 201 A 1 HETATM 16 C C23 QZM . . . B 2 14.094 36.799 -13.65 1 78.23 ? C23 QZM 201 A 1 HETATM 17 C C24 QZM . . . B 2 13.555 39.252 -10.788 1 116.44 ? C24 QZM 201 A 1 HETATM 18 C C25 QZM . . . B 2 9.399 40.532 -12.508 1 117.16 ? C25 QZM 201 A 1 HETATM 19 N N01 QZM . . . B 2 13.933 41.612 -14.451 1 99.35 ? N01 QZM 201 A 1 HETATM 20 N N02 QZM . . . B 2 14.916 37.323 -17.251 1 73.33 ? N02 QZM 201 A 1 HETATM 21 N N03 QZM . . . B 2 14.27 38.938 -15.51 1 95.2 ? N03 QZM 201 A 1 HETATM 22 N N04 QZM . . . B 2 12.366 36.419 -15.339 1 95.98 ? N04 QZM 201 A 1 HETATM 23 O O01 QZM . . . B 2 15.105 42.394 -16.256 1 84.26 ? O01 QZM 201 A 1 HETATM 24 O O02 QZM . . . B 2 15.806 40.763 -18.335 1 88.05 ? O02 QZM 201 A 1 HETATM 25 O O03 QZM . . . B 2 15.939 38.05 -19.24 1 81.2 ? O03 QZM 201 A 1 HETATM 26 O O04 QZM . . . B 2 11.536 36.072 -17.445 1 124.14 ? O04 QZM 201 A 1 HETATM 27 O O05 QZM . . . B 2 11.722 38.249 -16.932 1 92.07 ? O05 QZM 201 A 1 HETATM 28 O O06 QZM . . . B 2 10.017 40.096 -11.328 1 108.73 ? O06 QZM 201 A 1 HETATM 29 O O07 QZM . . . B 2 11.508 38.006 -10.329 1 120.05 ? O07 QZM 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 758 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #