data_6VJJ # _model_server_result.job_id k7FaJ_oXpgaDYKWWC7QYvw _model_server_result.datetime_utc '2024-11-02 12:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 6VJJ # _exptl.entry_id 6VJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VJJ _cell.length_a 44.132 _cell.length_b 67.572 _cell.length_c 71.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 C MG MG . A MG 201 1_555 D O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 C MG MG . A MG 201 1_555 D O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 C MG MG . A MG 201 1_555 K O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 C MG MG . A MG 201 1_555 K O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6VJJ _atom_sites.fract_transf_matrix[1][1] 0.022659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 1 MG MG . D 4 GNP A 1 202 2 GNP GNP . E 5 CL A 1 203 3 CL CL . F 5 CL A 1 204 4 CL CL . G 5 CL A 1 205 5 CL CL . H 6 EDO A 1 206 6 EDO EDO . I 7 MPD A 1 207 8 MPD MPD . J 6 EDO B 1 201 7 EDO EDO . K 8 HOH A 1 301 46 HOH HOH . K 8 HOH A 2 302 124 HOH HOH . K 8 HOH A 3 303 95 HOH HOH . K 8 HOH A 4 304 31 HOH HOH . K 8 HOH A 5 305 23 HOH HOH . K 8 HOH A 6 306 134 HOH HOH . K 8 HOH A 7 307 96 HOH HOH . K 8 HOH A 8 308 68 HOH HOH . K 8 HOH A 9 309 63 HOH HOH . K 8 HOH A 10 310 71 HOH HOH . K 8 HOH A 11 311 76 HOH HOH . K 8 HOH A 12 312 126 HOH HOH . K 8 HOH A 13 313 22 HOH HOH . K 8 HOH A 14 314 58 HOH HOH . K 8 HOH A 15 315 77 HOH HOH . K 8 HOH A 16 316 9 HOH HOH . K 8 HOH A 17 317 97 HOH HOH . K 8 HOH A 18 318 10 HOH HOH . K 8 HOH A 19 319 1 HOH HOH . K 8 HOH A 20 320 18 HOH HOH . K 8 HOH A 21 321 73 HOH HOH . K 8 HOH A 22 322 121 HOH HOH . K 8 HOH A 23 323 108 HOH HOH . K 8 HOH A 24 324 81 HOH HOH . K 8 HOH A 25 325 4 HOH HOH . K 8 HOH A 26 326 11 HOH HOH . K 8 HOH A 27 327 6 HOH HOH . K 8 HOH A 28 328 2 HOH HOH . K 8 HOH A 29 329 41 HOH HOH . K 8 HOH A 30 330 38 HOH HOH . K 8 HOH A 31 331 111 HOH HOH . K 8 HOH A 32 332 140 HOH HOH . K 8 HOH A 33 333 48 HOH HOH . K 8 HOH A 34 334 40 HOH HOH . K 8 HOH A 35 335 99 HOH HOH . K 8 HOH A 36 336 3 HOH HOH . K 8 HOH A 37 337 93 HOH HOH . K 8 HOH A 38 338 65 HOH HOH . K 8 HOH A 39 339 80 HOH HOH . K 8 HOH A 40 340 15 HOH HOH . K 8 HOH A 41 341 119 HOH HOH . K 8 HOH A 42 342 67 HOH HOH . K 8 HOH A 43 343 90 HOH HOH . K 8 HOH A 44 344 104 HOH HOH . K 8 HOH A 45 345 44 HOH HOH . K 8 HOH A 46 346 100 HOH HOH . K 8 HOH A 47 347 56 HOH HOH . K 8 HOH A 48 348 42 HOH HOH . K 8 HOH A 49 349 12 HOH HOH . K 8 HOH A 50 350 61 HOH HOH . K 8 HOH A 51 351 53 HOH HOH . K 8 HOH A 52 352 14 HOH HOH . K 8 HOH A 53 353 83 HOH HOH . K 8 HOH A 54 354 5 HOH HOH . K 8 HOH A 55 355 7 HOH HOH . K 8 HOH A 56 356 84 HOH HOH . K 8 HOH A 57 357 89 HOH HOH . K 8 HOH A 58 358 28 HOH HOH . K 8 HOH A 59 359 59 HOH HOH . K 8 HOH A 60 360 127 HOH HOH . K 8 HOH A 61 361 137 HOH HOH . K 8 HOH A 62 362 110 HOH HOH . K 8 HOH A 63 363 64 HOH HOH . K 8 HOH A 64 364 114 HOH HOH . K 8 HOH A 65 365 129 HOH HOH . K 8 HOH A 66 366 29 HOH HOH . K 8 HOH A 67 367 109 HOH HOH . K 8 HOH A 68 368 85 HOH HOH . K 8 HOH A 69 369 45 HOH HOH . K 8 HOH A 70 370 79 HOH HOH . K 8 HOH A 71 371 94 HOH HOH . K 8 HOH A 72 372 117 HOH HOH . K 8 HOH A 73 373 55 HOH HOH . K 8 HOH A 74 374 26 HOH HOH . K 8 HOH A 75 375 27 HOH HOH . K 8 HOH A 76 376 142 HOH HOH . K 8 HOH A 77 377 107 HOH HOH . K 8 HOH A 78 378 143 HOH HOH . K 8 HOH A 79 379 105 HOH HOH . K 8 HOH A 80 380 132 HOH HOH . K 8 HOH A 81 381 113 HOH HOH . K 8 HOH A 82 382 106 HOH HOH . K 8 HOH A 83 383 130 HOH HOH . K 8 HOH A 84 384 112 HOH HOH . K 8 HOH A 85 385 101 HOH HOH . K 8 HOH A 86 386 25 HOH HOH . K 8 HOH A 87 387 135 HOH HOH . K 8 HOH A 88 388 139 HOH HOH . K 8 HOH A 89 389 125 HOH HOH . K 8 HOH A 90 390 118 HOH HOH . L 8 HOH B 1 301 35 HOH HOH . L 8 HOH B 2 302 141 HOH HOH . L 8 HOH B 3 303 122 HOH HOH . L 8 HOH B 4 304 49 HOH HOH . L 8 HOH B 5 305 8 HOH HOH . L 8 HOH B 6 306 92 HOH HOH . L 8 HOH B 7 307 52 HOH HOH . L 8 HOH B 8 308 33 HOH HOH . L 8 HOH B 9 309 37 HOH HOH . L 8 HOH B 10 310 69 HOH HOH . L 8 HOH B 11 311 20 HOH HOH . L 8 HOH B 12 312 57 HOH HOH . L 8 HOH B 13 313 19 HOH HOH . L 8 HOH B 14 314 50 HOH HOH . L 8 HOH B 15 315 17 HOH HOH . L 8 HOH B 16 316 47 HOH HOH . L 8 HOH B 17 317 13 HOH HOH . L 8 HOH B 18 318 87 HOH HOH . L 8 HOH B 19 319 102 HOH HOH . L 8 HOH B 20 320 21 HOH HOH . L 8 HOH B 21 321 39 HOH HOH . L 8 HOH B 22 322 75 HOH HOH . L 8 HOH B 23 323 34 HOH HOH . L 8 HOH B 24 324 115 HOH HOH . L 8 HOH B 25 325 32 HOH HOH . L 8 HOH B 26 326 74 HOH HOH . L 8 HOH B 27 327 116 HOH HOH . L 8 HOH B 28 328 60 HOH HOH . L 8 HOH B 29 329 43 HOH HOH . L 8 HOH B 30 330 78 HOH HOH . L 8 HOH B 31 331 30 HOH HOH . L 8 HOH B 32 332 51 HOH HOH . L 8 HOH B 33 333 91 HOH HOH . L 8 HOH B 34 334 16 HOH HOH . L 8 HOH B 35 335 66 HOH HOH . L 8 HOH B 36 336 131 HOH HOH . L 8 HOH B 37 337 24 HOH HOH . L 8 HOH B 38 338 72 HOH HOH . L 8 HOH B 39 339 133 HOH HOH . L 8 HOH B 40 340 36 HOH HOH . L 8 HOH B 41 341 82 HOH HOH . L 8 HOH B 42 342 62 HOH HOH . L 8 HOH B 43 343 54 HOH HOH . L 8 HOH B 44 344 103 HOH HOH . L 8 HOH B 45 345 123 HOH HOH . L 8 HOH B 46 346 88 HOH HOH . L 8 HOH B 47 347 144 HOH HOH . L 8 HOH B 48 348 98 HOH HOH . L 8 HOH B 49 349 145 HOH HOH . L 8 HOH B 50 350 120 HOH HOH . L 8 HOH B 51 351 136 HOH HOH . L 8 HOH B 52 352 138 HOH HOH . L 8 HOH B 53 353 128 HOH HOH . L 8 HOH B 54 354 86 HOH HOH . L 8 HOH B 55 355 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 6 -19.387 -28.243 13.27 1 22.31 ? C1 EDO 206 A 1 HETATM 2 O O1 EDO . . . H 6 -18.123 -28.776 13.679 1 22.62 ? O1 EDO 206 A 1 HETATM 3 C C2 EDO . . . H 6 -19.228 -27.464 11.97 1 26.22 ? C2 EDO 206 A 1 HETATM 4 O O2 EDO . . . H 6 -18.419 -26.308 12.21 1 31.28 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #