data_6VJJ
#
_model_server_result.job_id            hn1KxMcvXvgQG7AqnHcwMw 
_model_server_result.datetime_utc      '2024-12-01 08:03:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vjj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":207}' 
#
_entry.id    6VJJ 
#
_exptl.entry_id    6VJJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VJJ 
_cell.length_a            44.132 
_cell.length_b            67.572 
_cell.length_c            71.26 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VJJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 C MG MG . A MG 201 1_555 D O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc4 C MG MG . A MG 201 1_555 D O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 K O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc6 C MG MG . A MG 201 1_555 K O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 297 n n 
C1 H11 MPD sing 298 n n 
C1 H12 MPD sing 299 n n 
C1 H13 MPD sing 300 n n 
C2 O2 MPD sing 301 n n 
C2 CM MPD sing 302 n n 
C2 C3 MPD sing 303 n n 
O2 HO2 MPD sing 304 n n 
CM HM1 MPD sing 305 n n 
CM HM2 MPD sing 306 n n 
CM HM3 MPD sing 307 n n 
C3 C4 MPD sing 308 n n 
C3 H31 MPD sing 309 n n 
C3 H32 MPD sing 310 n n 
C4 O4 MPD sing 311 n n 
C4 C5 MPD sing 312 n n 
C4 H4 MPD sing 313 n n 
O4 HO4 MPD sing 314 n n 
C5 H51 MPD sing 315 n n 
C5 H52 MPD sing 316 n n 
C5 H53 MPD sing 317 n n 
#
_atom_sites.entry_id                     6VJJ 
_atom_sites.fract_transf_matrix[1][1]    0.022659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014799 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 201 1 MG MG . 
D 4 GNP A 1 202 2 GNP GNP . 
E 5 CL A 1 203 3 CL CL . 
F 5 CL A 1 204 4 CL CL . 
G 5 CL A 1 205 5 CL CL . 
H 6 EDO A 1 206 6 EDO EDO . 
I 7 MPD A 1 207 8 MPD MPD . 
J 6 EDO B 1 201 7 EDO EDO . 
K 8 HOH A 1 301 46 HOH HOH . 
K 8 HOH A 2 302 124 HOH HOH . 
K 8 HOH A 3 303 95 HOH HOH . 
K 8 HOH A 4 304 31 HOH HOH . 
K 8 HOH A 5 305 23 HOH HOH . 
K 8 HOH A 6 306 134 HOH HOH . 
K 8 HOH A 7 307 96 HOH HOH . 
K 8 HOH A 8 308 68 HOH HOH . 
K 8 HOH A 9 309 63 HOH HOH . 
K 8 HOH A 10 310 71 HOH HOH . 
K 8 HOH A 11 311 76 HOH HOH . 
K 8 HOH A 12 312 126 HOH HOH . 
K 8 HOH A 13 313 22 HOH HOH . 
K 8 HOH A 14 314 58 HOH HOH . 
K 8 HOH A 15 315 77 HOH HOH . 
K 8 HOH A 16 316 9 HOH HOH . 
K 8 HOH A 17 317 97 HOH HOH . 
K 8 HOH A 18 318 10 HOH HOH . 
K 8 HOH A 19 319 1 HOH HOH . 
K 8 HOH A 20 320 18 HOH HOH . 
K 8 HOH A 21 321 73 HOH HOH . 
K 8 HOH A 22 322 121 HOH HOH . 
K 8 HOH A 23 323 108 HOH HOH . 
K 8 HOH A 24 324 81 HOH HOH . 
K 8 HOH A 25 325 4 HOH HOH . 
K 8 HOH A 26 326 11 HOH HOH . 
K 8 HOH A 27 327 6 HOH HOH . 
K 8 HOH A 28 328 2 HOH HOH . 
K 8 HOH A 29 329 41 HOH HOH . 
K 8 HOH A 30 330 38 HOH HOH . 
K 8 HOH A 31 331 111 HOH HOH . 
K 8 HOH A 32 332 140 HOH HOH . 
K 8 HOH A 33 333 48 HOH HOH . 
K 8 HOH A 34 334 40 HOH HOH . 
K 8 HOH A 35 335 99 HOH HOH . 
K 8 HOH A 36 336 3 HOH HOH . 
K 8 HOH A 37 337 93 HOH HOH . 
K 8 HOH A 38 338 65 HOH HOH . 
K 8 HOH A 39 339 80 HOH HOH . 
K 8 HOH A 40 340 15 HOH HOH . 
K 8 HOH A 41 341 119 HOH HOH . 
K 8 HOH A 42 342 67 HOH HOH . 
K 8 HOH A 43 343 90 HOH HOH . 
K 8 HOH A 44 344 104 HOH HOH . 
K 8 HOH A 45 345 44 HOH HOH . 
K 8 HOH A 46 346 100 HOH HOH . 
K 8 HOH A 47 347 56 HOH HOH . 
K 8 HOH A 48 348 42 HOH HOH . 
K 8 HOH A 49 349 12 HOH HOH . 
K 8 HOH A 50 350 61 HOH HOH . 
K 8 HOH A 51 351 53 HOH HOH . 
K 8 HOH A 52 352 14 HOH HOH . 
K 8 HOH A 53 353 83 HOH HOH . 
K 8 HOH A 54 354 5 HOH HOH . 
K 8 HOH A 55 355 7 HOH HOH . 
K 8 HOH A 56 356 84 HOH HOH . 
K 8 HOH A 57 357 89 HOH HOH . 
K 8 HOH A 58 358 28 HOH HOH . 
K 8 HOH A 59 359 59 HOH HOH . 
K 8 HOH A 60 360 127 HOH HOH . 
K 8 HOH A 61 361 137 HOH HOH . 
K 8 HOH A 62 362 110 HOH HOH . 
K 8 HOH A 63 363 64 HOH HOH . 
K 8 HOH A 64 364 114 HOH HOH . 
K 8 HOH A 65 365 129 HOH HOH . 
K 8 HOH A 66 366 29 HOH HOH . 
K 8 HOH A 67 367 109 HOH HOH . 
K 8 HOH A 68 368 85 HOH HOH . 
K 8 HOH A 69 369 45 HOH HOH . 
K 8 HOH A 70 370 79 HOH HOH . 
K 8 HOH A 71 371 94 HOH HOH . 
K 8 HOH A 72 372 117 HOH HOH . 
K 8 HOH A 73 373 55 HOH HOH . 
K 8 HOH A 74 374 26 HOH HOH . 
K 8 HOH A 75 375 27 HOH HOH . 
K 8 HOH A 76 376 142 HOH HOH . 
K 8 HOH A 77 377 107 HOH HOH . 
K 8 HOH A 78 378 143 HOH HOH . 
K 8 HOH A 79 379 105 HOH HOH . 
K 8 HOH A 80 380 132 HOH HOH . 
K 8 HOH A 81 381 113 HOH HOH . 
K 8 HOH A 82 382 106 HOH HOH . 
K 8 HOH A 83 383 130 HOH HOH . 
K 8 HOH A 84 384 112 HOH HOH . 
K 8 HOH A 85 385 101 HOH HOH . 
K 8 HOH A 86 386 25 HOH HOH . 
K 8 HOH A 87 387 135 HOH HOH . 
K 8 HOH A 88 388 139 HOH HOH . 
K 8 HOH A 89 389 125 HOH HOH . 
K 8 HOH A 90 390 118 HOH HOH . 
L 8 HOH B 1 301 35 HOH HOH . 
L 8 HOH B 2 302 141 HOH HOH . 
L 8 HOH B 3 303 122 HOH HOH . 
L 8 HOH B 4 304 49 HOH HOH . 
L 8 HOH B 5 305 8 HOH HOH . 
L 8 HOH B 6 306 92 HOH HOH . 
L 8 HOH B 7 307 52 HOH HOH . 
L 8 HOH B 8 308 33 HOH HOH . 
L 8 HOH B 9 309 37 HOH HOH . 
L 8 HOH B 10 310 69 HOH HOH . 
L 8 HOH B 11 311 20 HOH HOH . 
L 8 HOH B 12 312 57 HOH HOH . 
L 8 HOH B 13 313 19 HOH HOH . 
L 8 HOH B 14 314 50 HOH HOH . 
L 8 HOH B 15 315 17 HOH HOH . 
L 8 HOH B 16 316 47 HOH HOH . 
L 8 HOH B 17 317 13 HOH HOH . 
L 8 HOH B 18 318 87 HOH HOH . 
L 8 HOH B 19 319 102 HOH HOH . 
L 8 HOH B 20 320 21 HOH HOH . 
L 8 HOH B 21 321 39 HOH HOH . 
L 8 HOH B 22 322 75 HOH HOH . 
L 8 HOH B 23 323 34 HOH HOH . 
L 8 HOH B 24 324 115 HOH HOH . 
L 8 HOH B 25 325 32 HOH HOH . 
L 8 HOH B 26 326 74 HOH HOH . 
L 8 HOH B 27 327 116 HOH HOH . 
L 8 HOH B 28 328 60 HOH HOH . 
L 8 HOH B 29 329 43 HOH HOH . 
L 8 HOH B 30 330 78 HOH HOH . 
L 8 HOH B 31 331 30 HOH HOH . 
L 8 HOH B 32 332 51 HOH HOH . 
L 8 HOH B 33 333 91 HOH HOH . 
L 8 HOH B 34 334 16 HOH HOH . 
L 8 HOH B 35 335 66 HOH HOH . 
L 8 HOH B 36 336 131 HOH HOH . 
L 8 HOH B 37 337 24 HOH HOH . 
L 8 HOH B 38 338 72 HOH HOH . 
L 8 HOH B 39 339 133 HOH HOH . 
L 8 HOH B 40 340 36 HOH HOH . 
L 8 HOH B 41 341 82 HOH HOH . 
L 8 HOH B 42 342 62 HOH HOH . 
L 8 HOH B 43 343 54 HOH HOH . 
L 8 HOH B 44 344 103 HOH HOH . 
L 8 HOH B 45 345 123 HOH HOH . 
L 8 HOH B 46 346 88 HOH HOH . 
L 8 HOH B 47 347 144 HOH HOH . 
L 8 HOH B 48 348 98 HOH HOH . 
L 8 HOH B 49 349 145 HOH HOH . 
L 8 HOH B 50 350 120 HOH HOH . 
L 8 HOH B 51 351 136 HOH HOH . 
L 8 HOH B 52 352 138 HOH HOH . 
L 8 HOH B 53 353 128 HOH HOH . 
L 8 HOH B 54 354 86 HOH HOH . 
L 8 HOH B 55 355 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . I 7 -15.376 -24.064 4.64 1 52.57 ? C1 MPD 207 A 1 
HETATM 2 C C2 MPD . . . I 7 -16.092 -24.128 5.986 1 55.83 ? C2 MPD 207 A 1 
HETATM 3 O O2 MPD . . . I 7 -15.897 -22.847 6.638 1 58.68 ? O2 MPD 207 A 1 
HETATM 4 C CM MPD . . . I 7 -15.431 -25.154 6.891 1 54.49 ? CM MPD 207 A 1 
HETATM 5 C C3 MPD . . . I 7 -17.609 -24.343 5.893 1 55.18 ? C3 MPD 207 A 1 
HETATM 6 C C4 MPD . . . I 7 -18.231 -25.228 4.798 1 54.24 ? C4 MPD 207 A 1 
HETATM 7 O O4 MPD . . . I 7 -18.239 -24.55 3.557 1 55.64 ? O4 MPD 207 A 1 
HETATM 8 C C5 MPD . . . I 7 -17.639 -26.631 4.638 1 55.3 ? C5 MPD 207 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#