data_6VJL # _model_server_result.job_id wYyqIqIl3K_9jta7yZX9nQ _model_server_result.datetime_utc '2025-03-09 03:57:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 6VJL # _exptl.entry_id 6VJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VJL _cell.length_a 57.772 _cell.length_b 57.772 _cell.length_c 184.419 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.772 57.772 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.772 57.772 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 27 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 26 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 47 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 46 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 6VJL _atom_sites.fract_transf_matrix[1][1] 0.017309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 400 400 BTN BTN . C 3 HOH A 1 501 148 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 194 HOH HOH . C 3 HOH A 4 504 7 HOH HOH . C 3 HOH A 5 505 57 HOH HOH . C 3 HOH A 6 506 4 HOH HOH . C 3 HOH A 7 507 24 HOH HOH . C 3 HOH A 8 508 54 HOH HOH . C 3 HOH A 9 509 62 HOH HOH . C 3 HOH A 10 510 17 HOH HOH . C 3 HOH A 11 511 20 HOH HOH . C 3 HOH A 12 512 91 HOH HOH . C 3 HOH A 13 513 10 HOH HOH . C 3 HOH A 14 514 32 HOH HOH . C 3 HOH A 15 515 28 HOH HOH . C 3 HOH A 16 516 81 HOH HOH . C 3 HOH A 17 517 192 HOH HOH . C 3 HOH A 18 518 13 HOH HOH . C 3 HOH A 19 519 49 HOH HOH . C 3 HOH A 20 520 67 HOH HOH . C 3 HOH A 21 521 8 HOH HOH . C 3 HOH A 22 522 9 HOH HOH . C 3 HOH A 23 523 35 HOH HOH . C 3 HOH A 24 524 149 HOH HOH . C 3 HOH A 25 525 96 HOH HOH . C 3 HOH A 26 526 205 HOH HOH . C 3 HOH A 27 527 3 HOH HOH . C 3 HOH A 28 528 18 HOH HOH . C 3 HOH A 29 529 141 HOH HOH . C 3 HOH A 30 530 50 HOH HOH . C 3 HOH A 31 531 102 HOH HOH . C 3 HOH A 32 532 6 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 98 HOH HOH . C 3 HOH A 35 535 181 HOH HOH . C 3 HOH A 36 536 68 HOH HOH . C 3 HOH A 37 537 27 HOH HOH . C 3 HOH A 38 538 95 HOH HOH . C 3 HOH A 39 539 177 HOH HOH . C 3 HOH A 40 540 21 HOH HOH . C 3 HOH A 41 541 29 HOH HOH . C 3 HOH A 42 542 63 HOH HOH . C 3 HOH A 43 543 36 HOH HOH . C 3 HOH A 44 544 99 HOH HOH . C 3 HOH A 45 545 14 HOH HOH . C 3 HOH A 46 546 200 HOH HOH . C 3 HOH A 47 547 22 HOH HOH . C 3 HOH A 48 548 142 HOH HOH . C 3 HOH A 49 549 150 HOH HOH . C 3 HOH A 50 550 25 HOH HOH . C 3 HOH A 51 551 34 HOH HOH . C 3 HOH A 52 552 31 HOH HOH . C 3 HOH A 53 553 61 HOH HOH . C 3 HOH A 54 554 12 HOH HOH . C 3 HOH A 55 555 26 HOH HOH . C 3 HOH A 56 556 114 HOH HOH . C 3 HOH A 57 557 42 HOH HOH . C 3 HOH A 58 558 53 HOH HOH . C 3 HOH A 59 559 16 HOH HOH . C 3 HOH A 60 560 120 HOH HOH . C 3 HOH A 61 561 206 HOH HOH . C 3 HOH A 62 562 97 HOH HOH . C 3 HOH A 63 563 155 HOH HOH . C 3 HOH A 64 564 46 HOH HOH . C 3 HOH A 65 565 76 HOH HOH . C 3 HOH A 66 566 185 HOH HOH . C 3 HOH A 67 567 137 HOH HOH . C 3 HOH A 68 568 56 HOH HOH . C 3 HOH A 69 569 79 HOH HOH . C 3 HOH A 70 570 90 HOH HOH . C 3 HOH A 71 571 37 HOH HOH . C 3 HOH A 72 572 65 HOH HOH . C 3 HOH A 73 573 41 HOH HOH . C 3 HOH A 74 574 92 HOH HOH . C 3 HOH A 75 575 33 HOH HOH . C 3 HOH A 76 576 15 HOH HOH . C 3 HOH A 77 577 110 HOH HOH . C 3 HOH A 78 578 118 HOH HOH . C 3 HOH A 79 579 159 HOH HOH . C 3 HOH A 80 580 72 HOH HOH . C 3 HOH A 81 581 175 HOH HOH . C 3 HOH A 82 582 172 HOH HOH . C 3 HOH A 83 583 69 HOH HOH . C 3 HOH A 84 584 113 HOH HOH . C 3 HOH A 85 585 45 HOH HOH . C 3 HOH A 86 586 77 HOH HOH . C 3 HOH A 87 587 104 HOH HOH . C 3 HOH A 88 588 158 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 51 HOH HOH . C 3 HOH A 91 591 196 HOH HOH . C 3 HOH A 92 592 82 HOH HOH . C 3 HOH A 93 593 135 HOH HOH . C 3 HOH A 94 594 171 HOH HOH . C 3 HOH A 95 595 119 HOH HOH . C 3 HOH A 96 596 161 HOH HOH . C 3 HOH A 97 597 169 HOH HOH . C 3 HOH A 98 598 59 HOH HOH . C 3 HOH A 99 599 100 HOH HOH . C 3 HOH A 100 600 23 HOH HOH . C 3 HOH A 101 601 143 HOH HOH . C 3 HOH A 102 602 85 HOH HOH . C 3 HOH A 103 603 80 HOH HOH . C 3 HOH A 104 604 107 HOH HOH . C 3 HOH A 105 605 43 HOH HOH . C 3 HOH A 106 606 93 HOH HOH . C 3 HOH A 107 607 173 HOH HOH . C 3 HOH A 108 608 176 HOH HOH . C 3 HOH A 109 609 70 HOH HOH . C 3 HOH A 110 610 162 HOH HOH . C 3 HOH A 111 611 152 HOH HOH . C 3 HOH A 112 612 87 HOH HOH . C 3 HOH A 113 613 30 HOH HOH . C 3 HOH A 114 614 184 HOH HOH . C 3 HOH A 115 615 187 HOH HOH . C 3 HOH A 116 616 84 HOH HOH . C 3 HOH A 117 617 207 HOH HOH . C 3 HOH A 118 618 138 HOH HOH . C 3 HOH A 119 619 189 HOH HOH . C 3 HOH A 120 620 55 HOH HOH . C 3 HOH A 121 621 144 HOH HOH . C 3 HOH A 122 622 106 HOH HOH . C 3 HOH A 123 623 126 HOH HOH . C 3 HOH A 124 624 124 HOH HOH . C 3 HOH A 125 625 86 HOH HOH . C 3 HOH A 126 626 48 HOH HOH . C 3 HOH A 127 627 182 HOH HOH . C 3 HOH A 128 628 165 HOH HOH . C 3 HOH A 129 629 199 HOH HOH . C 3 HOH A 130 630 52 HOH HOH . C 3 HOH A 131 631 73 HOH HOH . C 3 HOH A 132 632 166 HOH HOH . C 3 HOH A 133 633 186 HOH HOH . C 3 HOH A 134 634 151 HOH HOH . C 3 HOH A 135 635 83 HOH HOH . C 3 HOH A 136 636 160 HOH HOH . C 3 HOH A 137 637 201 HOH HOH . C 3 HOH A 138 638 193 HOH HOH . C 3 HOH A 139 639 170 HOH HOH . C 3 HOH A 140 640 146 HOH HOH . C 3 HOH A 141 641 136 HOH HOH . C 3 HOH A 142 642 157 HOH HOH . C 3 HOH A 143 643 74 HOH HOH . C 3 HOH A 144 644 190 HOH HOH . C 3 HOH A 145 645 174 HOH HOH . C 3 HOH A 146 646 204 HOH HOH . C 3 HOH A 147 647 183 HOH HOH . C 3 HOH A 148 648 44 HOH HOH . C 3 HOH A 149 649 139 HOH HOH . C 3 HOH A 150 650 180 HOH HOH . C 3 HOH A 151 651 121 HOH HOH . C 3 HOH A 152 652 88 HOH HOH . C 3 HOH A 153 653 64 HOH HOH . C 3 HOH A 154 654 123 HOH HOH . C 3 HOH A 155 655 122 HOH HOH . C 3 HOH A 156 656 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . B 2 20.032 24.624 -14.253 1 13.05 ? C11 BTN 400 A 1 HETATM 2 O O11 BTN . . . B 2 20.07 25.673 -14.936 1 14.18 ? O11 BTN 400 A 1 HETATM 3 O O12 BTN . . . B 2 21.049 23.922 -14.041 1 14.11 ? O12 BTN 400 A 1 HETATM 4 C C10 BTN . . . B 2 18.715 24.186 -13.645 1 12.91 ? C10 BTN 400 A 1 HETATM 5 C C9 BTN . . . B 2 17.855 25.346 -13.127 1 11.9 ? C9 BTN 400 A 1 HETATM 6 C C8 BTN . . . B 2 18.465 26.04 -11.907 1 10.71 ? C8 BTN 400 A 1 HETATM 7 C C7 BTN . . . B 2 17.568 27.139 -11.347 1 12.23 ? C7 BTN 400 A 1 HETATM 8 C C2 BTN . . . B 2 18.185 27.785 -10.096 1 12 ? C2 BTN 400 A 1 HETATM 9 S S1 BTN . . . B 2 18.071 26.787 -8.631 1 11.49 ? S1 BTN 400 A 1 HETATM 10 C C6 BTN . . . B 2 18.58 28.154 -7.639 1 11.32 ? C6 BTN 400 A 1 HETATM 11 C C5 BTN . . . B 2 17.886 29.384 -8.216 1 10.64 ? C5 BTN 400 A 1 HETATM 12 N N1 BTN . . . B 2 16.577 29.561 -7.623 1 12.32 ? N1 BTN 400 A 1 HETATM 13 C C3 BTN . . . B 2 15.615 29.4 -8.522 1 11.33 ? C3 BTN 400 A 1 HETATM 14 O O3 BTN . . . B 2 14.416 29.455 -8.287 1 11.93 ? O3 BTN 400 A 1 HETATM 15 N N2 BTN . . . B 2 16.13 29.168 -9.719 1 12.21 ? N2 BTN 400 A 1 HETATM 16 C C4 BTN . . . B 2 17.583 29.136 -9.691 1 11.11 ? C4 BTN 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #