data_6VKA
#
_model_server_result.job_id            iV_mbQyfScHStzHKov3tlQ 
_model_server_result.datetime_utc      '2024-11-22 19:52:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":309}' 
#
_entry.id    6VKA 
#
_exptl.entry_id    6VKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKA 
_cell.length_a            46.302 
_cell.length_b            46.302 
_cell.length_c            138.051 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 17 A ASP 64 1_555 A N CSO 18 A CSO 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C CSO 18 A CSO 65 1_555 A N THR 19 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C ASP 17 B ASP 64 1_555 B N CSO 18 B CSO 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C CSO 18 B CSO 65 1_555 B N THR 19 B THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6VKA 
_atom_sites.fract_transf_matrix[1][1]    0.021597 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IOD A 1 301 1 IOD IOD . 
D 2 IOD A 1 302 3 IOD IOD . 
E 3 QZV A 1 303 1 QZV LIG . 
F 4 SO4 A 1 304 3 SO4 SO4 . 
G 4 SO4 A 1 305 5 SO4 SO4 . 
H 4 SO4 A 1 306 10 SO4 SO4 . 
I 4 SO4 A 1 307 11 SO4 SO4 . 
J 4 SO4 A 1 308 15 SO4 SO4 . 
K 2 IOD A 1 309 5 IOD IOD . 
L 2 IOD B 1 301 2 IOD IOD . 
M 2 IOD B 1 302 4 IOD IOD . 
N 4 SO4 B 1 303 6 SO4 SO4 . 
O 4 SO4 B 1 304 7 SO4 SO4 . 
P 4 SO4 B 1 305 9 SO4 SO4 . 
Q 4 SO4 B 1 306 12 SO4 SO4 . 
R 4 SO4 B 1 307 13 SO4 SO4 . 
S 2 IOD B 1 308 6 IOD IOD . 
T 5 HOH A 1 401 2 HOH HOH . 
T 5 HOH A 2 402 36 HOH HOH . 
T 5 HOH A 3 403 101 HOH HOH . 
T 5 HOH A 4 404 27 HOH HOH . 
T 5 HOH A 5 405 97 HOH HOH . 
T 5 HOH A 6 406 49 HOH HOH . 
T 5 HOH A 7 407 4 HOH HOH . 
T 5 HOH A 8 408 38 HOH HOH . 
T 5 HOH A 9 409 30 HOH HOH . 
T 5 HOH A 10 410 25 HOH HOH . 
T 5 HOH A 11 411 100 HOH HOH . 
T 5 HOH A 12 412 55 HOH HOH . 
T 5 HOH A 13 413 69 HOH HOH . 
T 5 HOH A 14 414 12 HOH HOH . 
T 5 HOH A 15 415 11 HOH HOH . 
T 5 HOH A 16 416 8 HOH HOH . 
T 5 HOH A 17 417 54 HOH HOH . 
T 5 HOH A 18 418 67 HOH HOH . 
T 5 HOH A 19 419 31 HOH HOH . 
T 5 HOH A 20 420 15 HOH HOH . 
T 5 HOH A 21 421 85 HOH HOH . 
T 5 HOH A 22 422 62 HOH HOH . 
T 5 HOH A 23 423 33 HOH HOH . 
T 5 HOH A 24 424 9 HOH HOH . 
T 5 HOH A 25 425 58 HOH HOH . 
T 5 HOH A 26 426 63 HOH HOH . 
T 5 HOH A 27 427 92 HOH HOH . 
T 5 HOH A 28 428 3 HOH HOH . 
T 5 HOH A 29 429 154 HOH HOH . 
T 5 HOH A 30 430 143 HOH HOH . 
T 5 HOH A 31 431 152 HOH HOH . 
T 5 HOH A 32 432 60 HOH HOH . 
T 5 HOH A 33 433 28 HOH HOH . 
T 5 HOH A 34 434 76 HOH HOH . 
T 5 HOH A 35 435 13 HOH HOH . 
T 5 HOH A 36 436 156 HOH HOH . 
T 5 HOH A 37 437 56 HOH HOH . 
T 5 HOH A 38 438 155 HOH HOH . 
T 5 HOH A 39 439 144 HOH HOH . 
T 5 HOH A 40 440 29 HOH HOH . 
T 5 HOH A 41 441 37 HOH HOH . 
T 5 HOH A 42 442 80 HOH HOH . 
T 5 HOH A 43 443 18 HOH HOH . 
T 5 HOH A 44 444 150 HOH HOH . 
T 5 HOH A 45 445 153 HOH HOH . 
T 5 HOH A 46 446 139 HOH HOH . 
T 5 HOH A 47 447 17 HOH HOH . 
T 5 HOH A 48 448 149 HOH HOH . 
T 5 HOH A 49 449 137 HOH HOH . 
T 5 HOH A 50 450 113 HOH HOH . 
T 5 HOH A 51 451 151 HOH HOH . 
U 5 HOH B 1 401 21 HOH HOH . 
U 5 HOH B 2 402 34 HOH HOH . 
U 5 HOH B 3 403 91 HOH HOH . 
U 5 HOH B 4 404 65 HOH HOH . 
U 5 HOH B 5 405 7 HOH HOH . 
U 5 HOH B 6 406 104 HOH HOH . 
U 5 HOH B 7 407 6 HOH HOH . 
U 5 HOH B 8 408 47 HOH HOH . 
U 5 HOH B 9 409 157 HOH HOH . 
U 5 HOH B 10 410 5 HOH HOH . 
U 5 HOH B 11 411 22 HOH HOH . 
U 5 HOH B 12 412 99 HOH HOH . 
U 5 HOH B 13 413 16 HOH HOH . 
U 5 HOH B 14 414 14 HOH HOH . 
U 5 HOH B 15 415 46 HOH HOH . 
U 5 HOH B 16 416 45 HOH HOH . 
U 5 HOH B 17 417 20 HOH HOH . 
U 5 HOH B 18 418 53 HOH HOH . 
U 5 HOH B 19 419 19 HOH HOH . 
U 5 HOH B 20 420 42 HOH HOH . 
U 5 HOH B 21 421 103 HOH HOH . 
U 5 HOH B 22 422 86 HOH HOH . 
U 5 HOH B 23 423 51 HOH HOH . 
U 5 HOH B 24 424 79 HOH HOH . 
U 5 HOH B 25 425 59 HOH HOH . 
U 5 HOH B 26 426 114 HOH HOH . 
U 5 HOH B 27 427 127 HOH HOH . 
U 5 HOH B 28 428 24 HOH HOH . 
U 5 HOH B 29 429 10 HOH HOH . 
U 5 HOH B 30 430 90 HOH HOH . 
U 5 HOH B 31 431 102 HOH HOH . 
U 5 HOH B 32 432 145 HOH HOH . 
U 5 HOH B 33 433 66 HOH HOH . 
U 5 HOH B 34 434 64 HOH HOH . 
U 5 HOH B 35 435 23 HOH HOH . 
U 5 HOH B 36 436 75 HOH HOH . 
U 5 HOH B 37 437 111 HOH HOH . 
U 5 HOH B 38 438 121 HOH HOH . 
U 5 HOH B 39 439 41 HOH HOH . 
U 5 HOH B 40 440 105 HOH HOH . 
U 5 HOH B 41 441 147 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               28.899 
_atom_site.Cartn_y               13.778 
_atom_site.Cartn_z               -31.401 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           309 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#