data_6VKC
#
_model_server_result.job_id            8OPVjq7kyiK0RuY29nLRRQ 
_model_server_result.datetime_utc      '2024-12-21 14:20:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":606}' 
#
_entry.id    6VKC 
#
_exptl.entry_id    6VKC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKC 
_cell.length_a            168.04 
_cell.length_b            168.04 
_cell.length_c            168.04 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   FUC 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O6 
_pdbx_entity_branch_link.leaving_atom_id_2           HO6 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 A 1 NAG F 800 NAG 
2 n B FUC 2 A 2 FUC F 801 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
covale ? covale1 A ND2 ASN 500 F ASN 500 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B O6 NAG . A NAG 1 1_555 B C1 FUC . A FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 396 n n 
S O2 SO4 doub 397 n n 
S O3 SO4 sing 398 n n 
S O4 SO4 sing 399 n n 
#
_atom_sites.entry_id                     6VKC 
_atom_sites.fract_transf_matrix[1][1]    0.005951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL F 1 603 1 CL CL . 
D 4 SO4 F 1 604 1 SO4 SO4 . 
E 4 SO4 F 1 605 2 SO4 SO4 . 
F 4 SO4 F 1 606 3 SO4 SO4 . 
G 4 SO4 F 1 607 4 SO4 SO4 . 
H 4 SO4 F 1 608 5 SO4 SO4 . 
I 4 SO4 F 1 609 6 SO4 SO4 . 
J 5 R0J F 1 610 1 R0J LIG . 
K 6 TAR F 1 611 1 TAR TAR . 
L 7 HOH F 1 701 55 HOH HOH . 
L 7 HOH F 2 702 34 HOH HOH . 
L 7 HOH F 3 703 27 HOH HOH . 
L 7 HOH F 4 704 20 HOH HOH . 
L 7 HOH F 5 705 48 HOH HOH . 
L 7 HOH F 6 706 4 HOH HOH . 
L 7 HOH F 7 707 5 HOH HOH . 
L 7 HOH F 8 708 39 HOH HOH . 
L 7 HOH F 9 709 19 HOH HOH . 
L 7 HOH F 10 710 14 HOH HOH . 
L 7 HOH F 11 711 72 HOH HOH . 
L 7 HOH F 12 712 81 HOH HOH . 
L 7 HOH F 13 713 6 HOH HOH . 
L 7 HOH F 14 714 68 HOH HOH . 
L 7 HOH F 15 715 85 HOH HOH . 
L 7 HOH F 16 716 2 HOH HOH . 
L 7 HOH F 17 717 17 HOH HOH . 
L 7 HOH F 18 718 62 HOH HOH . 
L 7 HOH F 19 719 47 HOH HOH . 
L 7 HOH F 20 720 70 HOH HOH . 
L 7 HOH F 21 721 51 HOH HOH . 
L 7 HOH F 22 722 87 HOH HOH . 
L 7 HOH F 23 723 10 HOH HOH . 
L 7 HOH F 24 724 11 HOH HOH . 
L 7 HOH F 25 725 30 HOH HOH . 
L 7 HOH F 26 726 18 HOH HOH . 
L 7 HOH F 27 727 53 HOH HOH . 
L 7 HOH F 28 728 60 HOH HOH . 
L 7 HOH F 29 729 57 HOH HOH . 
L 7 HOH F 30 730 26 HOH HOH . 
L 7 HOH F 31 731 7 HOH HOH . 
L 7 HOH F 32 732 49 HOH HOH . 
L 7 HOH F 33 733 44 HOH HOH . 
L 7 HOH F 34 734 78 HOH HOH . 
L 7 HOH F 35 735 46 HOH HOH . 
L 7 HOH F 36 736 3 HOH HOH . 
L 7 HOH F 37 737 24 HOH HOH . 
L 7 HOH F 38 738 29 HOH HOH . 
L 7 HOH F 39 739 71 HOH HOH . 
L 7 HOH F 40 740 43 HOH HOH . 
L 7 HOH F 41 741 89 HOH HOH . 
L 7 HOH F 42 742 23 HOH HOH . 
L 7 HOH F 43 743 8 HOH HOH . 
L 7 HOH F 44 744 84 HOH HOH . 
L 7 HOH F 45 745 77 HOH HOH . 
L 7 HOH F 46 746 75 HOH HOH . 
L 7 HOH F 47 747 1 HOH HOH . 
L 7 HOH F 48 748 40 HOH HOH . 
L 7 HOH F 49 749 16 HOH HOH . 
L 7 HOH F 50 750 66 HOH HOH . 
L 7 HOH F 51 751 67 HOH HOH . 
L 7 HOH F 52 752 36 HOH HOH . 
L 7 HOH F 53 753 59 HOH HOH . 
L 7 HOH F 54 754 35 HOH HOH . 
L 7 HOH F 55 755 61 HOH HOH . 
L 7 HOH F 56 756 32 HOH HOH . 
L 7 HOH F 57 757 25 HOH HOH . 
L 7 HOH F 58 758 37 HOH HOH . 
L 7 HOH F 59 759 50 HOH HOH . 
L 7 HOH F 60 760 22 HOH HOH . 
L 7 HOH F 61 761 42 HOH HOH . 
L 7 HOH F 62 762 12 HOH HOH . 
L 7 HOH F 63 763 21 HOH HOH . 
L 7 HOH F 64 764 38 HOH HOH . 
L 7 HOH F 65 765 13 HOH HOH . 
L 7 HOH F 66 766 9 HOH HOH . 
L 7 HOH F 67 767 73 HOH HOH . 
L 7 HOH F 68 768 15 HOH HOH . 
L 7 HOH F 69 769 54 HOH HOH . 
L 7 HOH F 70 770 69 HOH HOH . 
L 7 HOH F 71 771 91 HOH HOH . 
L 7 HOH F 72 772 74 HOH HOH . 
L 7 HOH F 73 773 76 HOH HOH . 
L 7 HOH F 74 774 88 HOH HOH . 
L 7 HOH F 75 775 65 HOH HOH . 
L 7 HOH F 76 776 41 HOH HOH . 
L 7 HOH F 77 777 58 HOH HOH . 
L 7 HOH F 78 778 45 HOH HOH . 
L 7 HOH F 79 779 90 HOH HOH . 
L 7 HOH F 80 780 28 HOH HOH . 
L 7 HOH F 81 781 80 HOH HOH . 
L 7 HOH F 82 782 33 HOH HOH . 
L 7 HOH F 83 783 82 HOH HOH . 
L 7 HOH F 84 784 31 HOH HOH . 
L 7 HOH F 85 785 64 HOH HOH . 
L 7 HOH F 86 786 56 HOH HOH . 
L 7 HOH F 87 787 86 HOH HOH . 
L 7 HOH F 88 788 52 HOH HOH . 
L 7 HOH F 89 789 79 HOH HOH . 
L 7 HOH F 90 790 83 HOH HOH . 
L 7 HOH F 91 791 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . F 4 -4.74 -9.904 25.185 1 127.18 ? S SO4 606 F 1 
HETATM 2 O O1 SO4 . . . F 4 -3.926 -8.796 24.697 1 127.83 ? O1 SO4 606 F 1 
HETATM 3 O O2 SO4 . . . F 4 -5.822 -10.159 24.24 1 127.41 ? O2 SO4 606 F 1 
HETATM 4 O O3 SO4 . . . F 4 -3.92 -11.106 25.297 1 127.25 ? O3 SO4 606 F 1 
HETATM 5 O O4 SO4 . . . F 4 -5.284 -9.556 26.496 1 126.99 ? O4 SO4 606 F 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#