data_6VKC # _model_server_result.job_id Y9mkUzMnBdKkEiSYmWNgaA _model_server_result.datetime_utc '2024-12-21 14:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":611}' # _entry.id 6VKC # _exptl.entry_id 6VKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VKC _cell.length_a 168.04 _cell.length_b 168.04 _cell.length_c 168.04 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG F 800 NAG 2 n B FUC 2 A 2 FUC F 801 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 500 F ASN 500 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B O6 NAG . A NAG 1 1_555 B C1 FUC . A FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 400 n n O11 C1 TAR sing 401 n n O11 HO1 TAR sing 402 n n C1 C2 TAR sing 403 n n C2 O2 TAR sing 404 n n C2 C3 TAR sing 405 n n C2 H2 TAR sing 406 n n O2 HO2 TAR sing 407 n n C3 O3 TAR sing 408 n n C3 C4 TAR sing 409 n n C3 H3 TAR sing 410 n n O3 HO3 TAR sing 411 n n C4 O4 TAR doub 412 n n C4 O41 TAR sing 413 n n O41 HO4 TAR sing 414 n n # _atom_sites.entry_id 6VKC _atom_sites.fract_transf_matrix[1][1] 0.005951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL F 1 603 1 CL CL . D 4 SO4 F 1 604 1 SO4 SO4 . E 4 SO4 F 1 605 2 SO4 SO4 . F 4 SO4 F 1 606 3 SO4 SO4 . G 4 SO4 F 1 607 4 SO4 SO4 . H 4 SO4 F 1 608 5 SO4 SO4 . I 4 SO4 F 1 609 6 SO4 SO4 . J 5 R0J F 1 610 1 R0J LIG . K 6 TAR F 1 611 1 TAR TAR . L 7 HOH F 1 701 55 HOH HOH . L 7 HOH F 2 702 34 HOH HOH . L 7 HOH F 3 703 27 HOH HOH . L 7 HOH F 4 704 20 HOH HOH . L 7 HOH F 5 705 48 HOH HOH . L 7 HOH F 6 706 4 HOH HOH . L 7 HOH F 7 707 5 HOH HOH . L 7 HOH F 8 708 39 HOH HOH . L 7 HOH F 9 709 19 HOH HOH . L 7 HOH F 10 710 14 HOH HOH . L 7 HOH F 11 711 72 HOH HOH . L 7 HOH F 12 712 81 HOH HOH . L 7 HOH F 13 713 6 HOH HOH . L 7 HOH F 14 714 68 HOH HOH . L 7 HOH F 15 715 85 HOH HOH . L 7 HOH F 16 716 2 HOH HOH . L 7 HOH F 17 717 17 HOH HOH . L 7 HOH F 18 718 62 HOH HOH . L 7 HOH F 19 719 47 HOH HOH . L 7 HOH F 20 720 70 HOH HOH . L 7 HOH F 21 721 51 HOH HOH . L 7 HOH F 22 722 87 HOH HOH . L 7 HOH F 23 723 10 HOH HOH . L 7 HOH F 24 724 11 HOH HOH . L 7 HOH F 25 725 30 HOH HOH . L 7 HOH F 26 726 18 HOH HOH . L 7 HOH F 27 727 53 HOH HOH . L 7 HOH F 28 728 60 HOH HOH . L 7 HOH F 29 729 57 HOH HOH . L 7 HOH F 30 730 26 HOH HOH . L 7 HOH F 31 731 7 HOH HOH . L 7 HOH F 32 732 49 HOH HOH . L 7 HOH F 33 733 44 HOH HOH . L 7 HOH F 34 734 78 HOH HOH . L 7 HOH F 35 735 46 HOH HOH . L 7 HOH F 36 736 3 HOH HOH . L 7 HOH F 37 737 24 HOH HOH . L 7 HOH F 38 738 29 HOH HOH . L 7 HOH F 39 739 71 HOH HOH . L 7 HOH F 40 740 43 HOH HOH . L 7 HOH F 41 741 89 HOH HOH . L 7 HOH F 42 742 23 HOH HOH . L 7 HOH F 43 743 8 HOH HOH . L 7 HOH F 44 744 84 HOH HOH . L 7 HOH F 45 745 77 HOH HOH . L 7 HOH F 46 746 75 HOH HOH . L 7 HOH F 47 747 1 HOH HOH . L 7 HOH F 48 748 40 HOH HOH . L 7 HOH F 49 749 16 HOH HOH . L 7 HOH F 50 750 66 HOH HOH . L 7 HOH F 51 751 67 HOH HOH . L 7 HOH F 52 752 36 HOH HOH . L 7 HOH F 53 753 59 HOH HOH . L 7 HOH F 54 754 35 HOH HOH . L 7 HOH F 55 755 61 HOH HOH . L 7 HOH F 56 756 32 HOH HOH . L 7 HOH F 57 757 25 HOH HOH . L 7 HOH F 58 758 37 HOH HOH . L 7 HOH F 59 759 50 HOH HOH . L 7 HOH F 60 760 22 HOH HOH . L 7 HOH F 61 761 42 HOH HOH . L 7 HOH F 62 762 12 HOH HOH . L 7 HOH F 63 763 21 HOH HOH . L 7 HOH F 64 764 38 HOH HOH . L 7 HOH F 65 765 13 HOH HOH . L 7 HOH F 66 766 9 HOH HOH . L 7 HOH F 67 767 73 HOH HOH . L 7 HOH F 68 768 15 HOH HOH . L 7 HOH F 69 769 54 HOH HOH . L 7 HOH F 70 770 69 HOH HOH . L 7 HOH F 71 771 91 HOH HOH . L 7 HOH F 72 772 74 HOH HOH . L 7 HOH F 73 773 76 HOH HOH . L 7 HOH F 74 774 88 HOH HOH . L 7 HOH F 75 775 65 HOH HOH . L 7 HOH F 76 776 41 HOH HOH . L 7 HOH F 77 777 58 HOH HOH . L 7 HOH F 78 778 45 HOH HOH . L 7 HOH F 79 779 90 HOH HOH . L 7 HOH F 80 780 28 HOH HOH . L 7 HOH F 81 781 80 HOH HOH . L 7 HOH F 82 782 33 HOH HOH . L 7 HOH F 83 783 82 HOH HOH . L 7 HOH F 84 784 31 HOH HOH . L 7 HOH F 85 785 64 HOH HOH . L 7 HOH F 86 786 56 HOH HOH . L 7 HOH F 87 787 86 HOH HOH . L 7 HOH F 88 788 52 HOH HOH . L 7 HOH F 89 789 79 HOH HOH . L 7 HOH F 90 790 83 HOH HOH . L 7 HOH F 91 791 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . K 6 10.558 10.218 19.548 1 102.12 ? O1 TAR 611 F 1 HETATM 2 O O11 TAR . . . K 6 12.357 10.776 20.685 1 99.12 ? O11 TAR 611 F 1 HETATM 3 C C1 TAR . . . K 6 11.593 10.899 19.702 1 101.83 ? C1 TAR 611 F 1 HETATM 4 C C2 TAR . . . K 6 11.917 11.914 18.648 1 105.39 ? C2 TAR 611 F 1 HETATM 5 O O2 TAR . . . K 6 12.77 12.927 19.193 1 106.64 ? O2 TAR 611 F 1 HETATM 6 C C3 TAR . . . K 6 12.59 11.244 17.453 1 107.64 ? C3 TAR 611 F 1 HETATM 7 O O3 TAR . . . K 6 11.892 10.032 17.142 1 107.98 ? O3 TAR 611 F 1 HETATM 8 C C4 TAR . . . K 6 14.027 10.919 17.747 1 109.08 ? C4 TAR 611 F 1 HETATM 9 O O4 TAR . . . K 6 14.494 9.863 17.265 1 109.12 ? O4 TAR 611 F 1 HETATM 10 O O41 TAR . . . K 6 14.71 11.712 18.439 1 109.88 ? O41 TAR 611 F 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 71 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1270 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 10 #