data_6VKK
#
_model_server_result.job_id            Pty0tdPJ5qV2lwCHEHoIDA 
_model_server_result.datetime_utc      '2024-11-27 03:23:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6vkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1102}' 
#
_entry.id    6VKK 
#
_exptl.entry_id    6VKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6VKK 
_cell.length_a            104.267 
_cell.length_b            107.902 
_cell.length_c            142.845 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6VKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,U 1 1 
B,J,K,L,V 2 1 
C,M,N,O,P,W 3 1 
D,Q,R,S,T,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 206 A CYS 845 1_555 C SG CYS 206 C CYS 845 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
disulf ? disulf2 B SG CYS 206 D CYS 845 1_555 D SG CYS 206 B CYS 845 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6VKK 
_atom_sites.fract_transf_matrix[1][1]    0.009591 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RPB A 1 1101 1101 RPB RPB . 
F 3 GOL A 1 1102 1201 GOL GOL . 
G 4 SO4 A 1 1103 1 SO4 SO4 . 
H 4 SO4 A 1 1104 6 SO4 SO4 . 
I 4 SO4 A 1 1105 8 SO4 SO4 . 
J 2 RPB D 1 1101 1101 RPB RPB . 
K 3 GOL D 1 1102 1201 GOL GOL . 
L 4 SO4 D 1 1103 7 SO4 SO4 . 
M 2 RPB C 1 1101 1101 RPB RPB . 
N 4 SO4 C 1 1102 3 SO4 SO4 . 
O 4 SO4 C 1 1103 4 SO4 SO4 . 
P 4 SO4 C 1 1104 5 SO4 SO4 . 
Q 3 GOL B 1 1201 1201 GOL GOL . 
R 2 RPB B 1 1202 1101 RPB RPB . 
S 4 SO4 B 1 1203 2 SO4 SO4 . 
T 4 SO4 B 1 1204 9 SO4 SO4 . 
U 5 HOH A 1 1201 113 HOH HOH . 
U 5 HOH A 2 1202 89 HOH HOH . 
U 5 HOH A 3 1203 118 HOH HOH . 
U 5 HOH A 4 1204 92 HOH HOH . 
U 5 HOH A 5 1205 35 HOH HOH . 
U 5 HOH A 6 1206 8 HOH HOH . 
U 5 HOH A 7 1207 168 HOH HOH . 
U 5 HOH A 8 1208 99 HOH HOH . 
U 5 HOH A 9 1209 166 HOH HOH . 
U 5 HOH A 10 1210 80 HOH HOH . 
U 5 HOH A 11 1211 45 HOH HOH . 
U 5 HOH A 12 1212 100 HOH HOH . 
U 5 HOH A 13 1213 34 HOH HOH . 
U 5 HOH A 14 1214 31 HOH HOH . 
U 5 HOH A 15 1215 66 HOH HOH . 
U 5 HOH A 16 1216 144 HOH HOH . 
U 5 HOH A 17 1217 52 HOH HOH . 
U 5 HOH A 18 1218 147 HOH HOH . 
U 5 HOH A 19 1219 78 HOH HOH . 
U 5 HOH A 20 1220 19 HOH HOH . 
U 5 HOH A 21 1221 14 HOH HOH . 
U 5 HOH A 22 1222 85 HOH HOH . 
U 5 HOH A 23 1223 94 HOH HOH . 
U 5 HOH A 24 1224 47 HOH HOH . 
U 5 HOH A 25 1225 37 HOH HOH . 
U 5 HOH A 26 1226 162 HOH HOH . 
U 5 HOH A 27 1227 21 HOH HOH . 
U 5 HOH A 28 1228 68 HOH HOH . 
U 5 HOH A 29 1229 56 HOH HOH . 
U 5 HOH A 30 1230 30 HOH HOH . 
U 5 HOH A 31 1231 40 HOH HOH . 
U 5 HOH A 32 1232 9 HOH HOH . 
U 5 HOH A 33 1233 82 HOH HOH . 
U 5 HOH A 34 1234 70 HOH HOH . 
U 5 HOH A 35 1235 111 HOH HOH . 
U 5 HOH A 36 1236 159 HOH HOH . 
U 5 HOH A 37 1237 145 HOH HOH . 
U 5 HOH A 38 1238 62 HOH HOH . 
U 5 HOH A 39 1239 161 HOH HOH . 
U 5 HOH A 40 1240 90 HOH HOH . 
U 5 HOH A 41 1241 16 HOH HOH . 
U 5 HOH A 42 1242 69 HOH HOH . 
U 5 HOH A 43 1243 17 HOH HOH . 
U 5 HOH A 44 1244 106 HOH HOH . 
U 5 HOH A 45 1245 146 HOH HOH . 
U 5 HOH A 46 1246 114 HOH HOH . 
U 5 HOH A 47 1247 13 HOH HOH . 
U 5 HOH A 48 1248 115 HOH HOH . 
U 5 HOH A 49 1249 119 HOH HOH . 
U 5 HOH A 50 1250 160 HOH HOH . 
U 5 HOH A 51 1251 132 HOH HOH . 
U 5 HOH A 52 1252 51 HOH HOH . 
V 5 HOH D 1 1201 20 HOH HOH . 
V 5 HOH D 2 1202 98 HOH HOH . 
V 5 HOH D 3 1203 155 HOH HOH . 
V 5 HOH D 4 1204 6 HOH HOH . 
V 5 HOH D 5 1205 102 HOH HOH . 
V 5 HOH D 6 1206 39 HOH HOH . 
V 5 HOH D 7 1207 105 HOH HOH . 
V 5 HOH D 8 1208 154 HOH HOH . 
V 5 HOH D 9 1209 142 HOH HOH . 
V 5 HOH D 10 1210 33 HOH HOH . 
V 5 HOH D 11 1211 44 HOH HOH . 
V 5 HOH D 12 1212 140 HOH HOH . 
V 5 HOH D 13 1213 165 HOH HOH . 
V 5 HOH D 14 1214 170 HOH HOH . 
V 5 HOH D 15 1215 141 HOH HOH . 
V 5 HOH D 16 1216 107 HOH HOH . 
V 5 HOH D 17 1217 32 HOH HOH . 
V 5 HOH D 18 1218 43 HOH HOH . 
V 5 HOH D 19 1219 138 HOH HOH . 
V 5 HOH D 20 1220 157 HOH HOH . 
V 5 HOH D 21 1221 156 HOH HOH . 
V 5 HOH D 22 1222 103 HOH HOH . 
V 5 HOH D 23 1223 164 HOH HOH . 
V 5 HOH D 24 1224 143 HOH HOH . 
V 5 HOH D 25 1225 134 HOH HOH . 
V 5 HOH D 26 1226 139 HOH HOH . 
V 5 HOH D 27 1227 110 HOH HOH . 
V 5 HOH D 28 1228 83 HOH HOH . 
V 5 HOH D 29 1229 136 HOH HOH . 
V 5 HOH D 30 1230 50 HOH HOH . 
V 5 HOH D 31 1231 137 HOH HOH . 
V 5 HOH D 32 1232 135 HOH HOH . 
V 5 HOH D 33 1233 126 HOH HOH . 
W 5 HOH C 1 1201 121 HOH HOH . 
W 5 HOH C 2 1202 175 HOH HOH . 
W 5 HOH C 3 1203 120 HOH HOH . 
W 5 HOH C 4 1204 1 HOH HOH . 
W 5 HOH C 5 1205 36 HOH HOH . 
W 5 HOH C 6 1206 176 HOH HOH . 
W 5 HOH C 7 1207 177 HOH HOH . 
W 5 HOH C 8 1208 4 HOH HOH . 
W 5 HOH C 9 1209 48 HOH HOH . 
W 5 HOH C 10 1210 129 HOH HOH . 
W 5 HOH C 11 1211 153 HOH HOH . 
W 5 HOH C 12 1212 2 HOH HOH . 
W 5 HOH C 13 1213 171 HOH HOH . 
W 5 HOH C 14 1214 77 HOH HOH . 
W 5 HOH C 15 1215 42 HOH HOH . 
W 5 HOH C 16 1216 173 HOH HOH . 
W 5 HOH C 17 1217 27 HOH HOH . 
W 5 HOH C 18 1218 3 HOH HOH . 
W 5 HOH C 19 1219 59 HOH HOH . 
W 5 HOH C 20 1220 29 HOH HOH . 
W 5 HOH C 21 1221 81 HOH HOH . 
W 5 HOH C 22 1222 109 HOH HOH . 
W 5 HOH C 23 1223 167 HOH HOH . 
W 5 HOH C 24 1224 108 HOH HOH . 
W 5 HOH C 25 1225 148 HOH HOH . 
W 5 HOH C 26 1226 95 HOH HOH . 
W 5 HOH C 27 1227 172 HOH HOH . 
W 5 HOH C 28 1228 128 HOH HOH . 
W 5 HOH C 29 1229 131 HOH HOH . 
W 5 HOH C 30 1230 174 HOH HOH . 
X 5 HOH B 1 1301 123 HOH HOH . 
X 5 HOH B 2 1302 28 HOH HOH . 
X 5 HOH B 3 1303 79 HOH HOH . 
X 5 HOH B 4 1304 64 HOH HOH . 
X 5 HOH B 5 1305 116 HOH HOH . 
X 5 HOH B 6 1306 41 HOH HOH . 
X 5 HOH B 7 1307 124 HOH HOH . 
X 5 HOH B 8 1308 158 HOH HOH . 
X 5 HOH B 9 1309 93 HOH HOH . 
X 5 HOH B 10 1310 5 HOH HOH . 
X 5 HOH B 11 1311 73 HOH HOH . 
X 5 HOH B 12 1312 25 HOH HOH . 
X 5 HOH B 13 1313 76 HOH HOH . 
X 5 HOH B 14 1314 18 HOH HOH . 
X 5 HOH B 15 1315 63 HOH HOH . 
X 5 HOH B 16 1316 55 HOH HOH . 
X 5 HOH B 17 1317 60 HOH HOH . 
X 5 HOH B 18 1318 133 HOH HOH . 
X 5 HOH B 19 1319 57 HOH HOH . 
X 5 HOH B 20 1320 71 HOH HOH . 
X 5 HOH B 21 1321 88 HOH HOH . 
X 5 HOH B 22 1322 54 HOH HOH . 
X 5 HOH B 23 1323 26 HOH HOH . 
X 5 HOH B 24 1324 101 HOH HOH . 
X 5 HOH B 25 1325 84 HOH HOH . 
X 5 HOH B 26 1326 96 HOH HOH . 
X 5 HOH B 27 1327 53 HOH HOH . 
X 5 HOH B 28 1328 169 HOH HOH . 
X 5 HOH B 29 1329 7 HOH HOH . 
X 5 HOH B 30 1330 46 HOH HOH . 
X 5 HOH B 31 1331 15 HOH HOH . 
X 5 HOH B 32 1332 112 HOH HOH . 
X 5 HOH B 33 1333 130 HOH HOH . 
X 5 HOH B 34 1334 23 HOH HOH . 
X 5 HOH B 35 1335 22 HOH HOH . 
X 5 HOH B 36 1336 151 HOH HOH . 
X 5 HOH B 37 1337 72 HOH HOH . 
X 5 HOH B 38 1338 104 HOH HOH . 
X 5 HOH B 39 1339 49 HOH HOH . 
X 5 HOH B 40 1340 125 HOH HOH . 
X 5 HOH B 41 1341 152 HOH HOH . 
X 5 HOH B 42 1342 12 HOH HOH . 
X 5 HOH B 43 1343 74 HOH HOH . 
X 5 HOH B 44 1344 149 HOH HOH . 
X 5 HOH B 45 1345 163 HOH HOH . 
X 5 HOH B 46 1346 38 HOH HOH . 
X 5 HOH B 47 1347 75 HOH HOH . 
X 5 HOH B 48 1348 122 HOH HOH . 
X 5 HOH B 49 1349 67 HOH HOH . 
X 5 HOH B 50 1350 91 HOH HOH . 
X 5 HOH B 51 1351 11 HOH HOH . 
X 5 HOH B 52 1352 61 HOH HOH . 
X 5 HOH B 53 1353 58 HOH HOH . 
X 5 HOH B 54 1354 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 3 -60.171 27.157 25.42 1 59.33 ? C1 GOL 1102 D 1 
HETATM 2 O O1 GOL . . . K 3 -59.21 27.289 24.378 1 60.58 ? O1 GOL 1102 D 1 
HETATM 3 C C2 GOL . . . K 3 -60.148 25.765 26.004 1 58.13 ? C2 GOL 1102 D 1 
HETATM 4 O O2 GOL . . . K 3 -60.481 25.818 27.392 1 59.59 ? O2 GOL 1102 D 1 
HETATM 5 C C3 GOL . . . K 3 -61.064 24.808 25.282 1 58.32 ? C3 GOL 1102 D 1 
HETATM 6 O O3 GOL . . . K 3 -60.886 23.47 25.74 1 61.08 ? O3 GOL 1102 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#