data_6VKK # _model_server_result.job_id fecqVTILDk-ecZAKmIfUhQ _model_server_result.datetime_utc '2024-11-23 11:54:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1202}' # _entry.id 6VKK # _exptl.entry_id 6VKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Rucaparib _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6VKK _cell.length_a 104.267 _cell.length_b 107.902 _cell.length_c 142.845 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,U 1 1 B,J,K,L,V 2 1 C,M,N,O,P,W 3 1 D,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 M N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 845 1_555 C SG CYS 206 C CYS 845 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? disulf ? disulf2 B SG CYS 206 D CYS 845 1_555 D SG CYS 206 B CYS 845 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C19 H18 F N3 O' _chem_comp.formula_weight 323.364 _chem_comp.id RPB _chem_comp.mon_nstd_flag . _chem_comp.name Rucaparib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C7 RPB doub 290 n n C7 N1 RPB sing 291 n n C7 C4 RPB sing 292 n n N1 C8 RPB sing 293 n n C8 C9 RPB sing 294 n n C9 C10 RPB sing 295 n n C10 C5 RPB sing 296 n y C10 C11 RPB doub 297 n y C5 C4 RPB sing 298 n y C5 C6 RPB doub 299 n y C4 C3 RPB doub 300 n y C3 C2 RPB sing 301 n y C2 F1 RPB sing 302 n n C2 C1 RPB doub 303 n y C1 C6 RPB sing 304 n y C6 N2 RPB sing 305 n y N2 C11 RPB sing 306 n y C11 C12 RPB sing 307 n n C12 C14 RPB sing 308 n y C12 C13 RPB doub 309 n y C14 C15 RPB doub 310 n y C15 C16 RPB sing 311 n y C13 C17 RPB sing 312 n y C17 C16 RPB doub 313 n y C16 C18 RPB sing 314 n n C18 N3 RPB sing 315 n n N3 C19 RPB sing 316 n n N1 H1 RPB sing 317 n n C8 H81C RPB sing 318 n n C8 H82C RPB sing 319 n n C9 H91C RPB sing 320 n n C9 H92C RPB sing 321 n n C3 H3 RPB sing 322 n n C1 HA RPB sing 323 n n N2 H2 RPB sing 324 n n C14 H14 RPB sing 325 n n C13 H13 RPB sing 326 n n C15 H15 RPB sing 327 n n C17 H17 RPB sing 328 n n C18 H181 RPB sing 329 n n C18 H182 RPB sing 330 n n N3 HB RPB sing 331 n n C19 H191 RPB sing 332 n n C19 H192 RPB sing 333 n n C19 H193 RPB sing 334 n n # _atom_sites.entry_id 6VKK _atom_sites.fract_transf_matrix[1][1] 0.009591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RPB A 1 1101 1101 RPB RPB . F 3 GOL A 1 1102 1201 GOL GOL . G 4 SO4 A 1 1103 1 SO4 SO4 . H 4 SO4 A 1 1104 6 SO4 SO4 . I 4 SO4 A 1 1105 8 SO4 SO4 . J 2 RPB D 1 1101 1101 RPB RPB . K 3 GOL D 1 1102 1201 GOL GOL . L 4 SO4 D 1 1103 7 SO4 SO4 . M 2 RPB C 1 1101 1101 RPB RPB . N 4 SO4 C 1 1102 3 SO4 SO4 . O 4 SO4 C 1 1103 4 SO4 SO4 . P 4 SO4 C 1 1104 5 SO4 SO4 . Q 3 GOL B 1 1201 1201 GOL GOL . R 2 RPB B 1 1202 1101 RPB RPB . S 4 SO4 B 1 1203 2 SO4 SO4 . T 4 SO4 B 1 1204 9 SO4 SO4 . U 5 HOH A 1 1201 113 HOH HOH . U 5 HOH A 2 1202 89 HOH HOH . U 5 HOH A 3 1203 118 HOH HOH . U 5 HOH A 4 1204 92 HOH HOH . U 5 HOH A 5 1205 35 HOH HOH . U 5 HOH A 6 1206 8 HOH HOH . U 5 HOH A 7 1207 168 HOH HOH . U 5 HOH A 8 1208 99 HOH HOH . U 5 HOH A 9 1209 166 HOH HOH . U 5 HOH A 10 1210 80 HOH HOH . U 5 HOH A 11 1211 45 HOH HOH . U 5 HOH A 12 1212 100 HOH HOH . U 5 HOH A 13 1213 34 HOH HOH . U 5 HOH A 14 1214 31 HOH HOH . U 5 HOH A 15 1215 66 HOH HOH . U 5 HOH A 16 1216 144 HOH HOH . U 5 HOH A 17 1217 52 HOH HOH . U 5 HOH A 18 1218 147 HOH HOH . U 5 HOH A 19 1219 78 HOH HOH . U 5 HOH A 20 1220 19 HOH HOH . U 5 HOH A 21 1221 14 HOH HOH . U 5 HOH A 22 1222 85 HOH HOH . U 5 HOH A 23 1223 94 HOH HOH . U 5 HOH A 24 1224 47 HOH HOH . U 5 HOH A 25 1225 37 HOH HOH . U 5 HOH A 26 1226 162 HOH HOH . U 5 HOH A 27 1227 21 HOH HOH . U 5 HOH A 28 1228 68 HOH HOH . U 5 HOH A 29 1229 56 HOH HOH . U 5 HOH A 30 1230 30 HOH HOH . U 5 HOH A 31 1231 40 HOH HOH . U 5 HOH A 32 1232 9 HOH HOH . U 5 HOH A 33 1233 82 HOH HOH . U 5 HOH A 34 1234 70 HOH HOH . U 5 HOH A 35 1235 111 HOH HOH . U 5 HOH A 36 1236 159 HOH HOH . U 5 HOH A 37 1237 145 HOH HOH . U 5 HOH A 38 1238 62 HOH HOH . U 5 HOH A 39 1239 161 HOH HOH . U 5 HOH A 40 1240 90 HOH HOH . U 5 HOH A 41 1241 16 HOH HOH . U 5 HOH A 42 1242 69 HOH HOH . U 5 HOH A 43 1243 17 HOH HOH . U 5 HOH A 44 1244 106 HOH HOH . U 5 HOH A 45 1245 146 HOH HOH . U 5 HOH A 46 1246 114 HOH HOH . U 5 HOH A 47 1247 13 HOH HOH . U 5 HOH A 48 1248 115 HOH HOH . U 5 HOH A 49 1249 119 HOH HOH . U 5 HOH A 50 1250 160 HOH HOH . U 5 HOH A 51 1251 132 HOH HOH . U 5 HOH A 52 1252 51 HOH HOH . V 5 HOH D 1 1201 20 HOH HOH . V 5 HOH D 2 1202 98 HOH HOH . V 5 HOH D 3 1203 155 HOH HOH . V 5 HOH D 4 1204 6 HOH HOH . V 5 HOH D 5 1205 102 HOH HOH . V 5 HOH D 6 1206 39 HOH HOH . V 5 HOH D 7 1207 105 HOH HOH . V 5 HOH D 8 1208 154 HOH HOH . V 5 HOH D 9 1209 142 HOH HOH . V 5 HOH D 10 1210 33 HOH HOH . V 5 HOH D 11 1211 44 HOH HOH . V 5 HOH D 12 1212 140 HOH HOH . V 5 HOH D 13 1213 165 HOH HOH . V 5 HOH D 14 1214 170 HOH HOH . V 5 HOH D 15 1215 141 HOH HOH . V 5 HOH D 16 1216 107 HOH HOH . V 5 HOH D 17 1217 32 HOH HOH . V 5 HOH D 18 1218 43 HOH HOH . V 5 HOH D 19 1219 138 HOH HOH . V 5 HOH D 20 1220 157 HOH HOH . V 5 HOH D 21 1221 156 HOH HOH . V 5 HOH D 22 1222 103 HOH HOH . V 5 HOH D 23 1223 164 HOH HOH . V 5 HOH D 24 1224 143 HOH HOH . V 5 HOH D 25 1225 134 HOH HOH . V 5 HOH D 26 1226 139 HOH HOH . V 5 HOH D 27 1227 110 HOH HOH . V 5 HOH D 28 1228 83 HOH HOH . V 5 HOH D 29 1229 136 HOH HOH . V 5 HOH D 30 1230 50 HOH HOH . V 5 HOH D 31 1231 137 HOH HOH . V 5 HOH D 32 1232 135 HOH HOH . V 5 HOH D 33 1233 126 HOH HOH . W 5 HOH C 1 1201 121 HOH HOH . W 5 HOH C 2 1202 175 HOH HOH . W 5 HOH C 3 1203 120 HOH HOH . W 5 HOH C 4 1204 1 HOH HOH . W 5 HOH C 5 1205 36 HOH HOH . W 5 HOH C 6 1206 176 HOH HOH . W 5 HOH C 7 1207 177 HOH HOH . W 5 HOH C 8 1208 4 HOH HOH . W 5 HOH C 9 1209 48 HOH HOH . W 5 HOH C 10 1210 129 HOH HOH . W 5 HOH C 11 1211 153 HOH HOH . W 5 HOH C 12 1212 2 HOH HOH . W 5 HOH C 13 1213 171 HOH HOH . W 5 HOH C 14 1214 77 HOH HOH . W 5 HOH C 15 1215 42 HOH HOH . W 5 HOH C 16 1216 173 HOH HOH . W 5 HOH C 17 1217 27 HOH HOH . W 5 HOH C 18 1218 3 HOH HOH . W 5 HOH C 19 1219 59 HOH HOH . W 5 HOH C 20 1220 29 HOH HOH . W 5 HOH C 21 1221 81 HOH HOH . W 5 HOH C 22 1222 109 HOH HOH . W 5 HOH C 23 1223 167 HOH HOH . W 5 HOH C 24 1224 108 HOH HOH . W 5 HOH C 25 1225 148 HOH HOH . W 5 HOH C 26 1226 95 HOH HOH . W 5 HOH C 27 1227 172 HOH HOH . W 5 HOH C 28 1228 128 HOH HOH . W 5 HOH C 29 1229 131 HOH HOH . W 5 HOH C 30 1230 174 HOH HOH . X 5 HOH B 1 1301 123 HOH HOH . X 5 HOH B 2 1302 28 HOH HOH . X 5 HOH B 3 1303 79 HOH HOH . X 5 HOH B 4 1304 64 HOH HOH . X 5 HOH B 5 1305 116 HOH HOH . X 5 HOH B 6 1306 41 HOH HOH . X 5 HOH B 7 1307 124 HOH HOH . X 5 HOH B 8 1308 158 HOH HOH . X 5 HOH B 9 1309 93 HOH HOH . X 5 HOH B 10 1310 5 HOH HOH . X 5 HOH B 11 1311 73 HOH HOH . X 5 HOH B 12 1312 25 HOH HOH . X 5 HOH B 13 1313 76 HOH HOH . X 5 HOH B 14 1314 18 HOH HOH . X 5 HOH B 15 1315 63 HOH HOH . X 5 HOH B 16 1316 55 HOH HOH . X 5 HOH B 17 1317 60 HOH HOH . X 5 HOH B 18 1318 133 HOH HOH . X 5 HOH B 19 1319 57 HOH HOH . X 5 HOH B 20 1320 71 HOH HOH . X 5 HOH B 21 1321 88 HOH HOH . X 5 HOH B 22 1322 54 HOH HOH . X 5 HOH B 23 1323 26 HOH HOH . X 5 HOH B 24 1324 101 HOH HOH . X 5 HOH B 25 1325 84 HOH HOH . X 5 HOH B 26 1326 96 HOH HOH . X 5 HOH B 27 1327 53 HOH HOH . X 5 HOH B 28 1328 169 HOH HOH . X 5 HOH B 29 1329 7 HOH HOH . X 5 HOH B 30 1330 46 HOH HOH . X 5 HOH B 31 1331 15 HOH HOH . X 5 HOH B 32 1332 112 HOH HOH . X 5 HOH B 33 1333 130 HOH HOH . X 5 HOH B 34 1334 23 HOH HOH . X 5 HOH B 35 1335 22 HOH HOH . X 5 HOH B 36 1336 151 HOH HOH . X 5 HOH B 37 1337 72 HOH HOH . X 5 HOH B 38 1338 104 HOH HOH . X 5 HOH B 39 1339 49 HOH HOH . X 5 HOH B 40 1340 125 HOH HOH . X 5 HOH B 41 1341 152 HOH HOH . X 5 HOH B 42 1342 12 HOH HOH . X 5 HOH B 43 1343 74 HOH HOH . X 5 HOH B 44 1344 149 HOH HOH . X 5 HOH B 45 1345 163 HOH HOH . X 5 HOH B 46 1346 38 HOH HOH . X 5 HOH B 47 1347 75 HOH HOH . X 5 HOH B 48 1348 122 HOH HOH . X 5 HOH B 49 1349 67 HOH HOH . X 5 HOH B 50 1350 91 HOH HOH . X 5 HOH B 51 1351 11 HOH HOH . X 5 HOH B 52 1352 61 HOH HOH . X 5 HOH B 53 1353 58 HOH HOH . X 5 HOH B 54 1354 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 RPB . . . R 2 -31.119 17.959 -25.326 1 34.71 ? O1 RPB 1202 B 1 HETATM 2 C C7 RPB . . . R 2 -31.646 19.053 -25.524 1 34.79 ? C7 RPB 1202 B 1 HETATM 3 N N1 RPB . . . R 2 -31.287 19.785 -26.583 1 34.06 ? N1 RPB 1202 B 1 HETATM 4 C C8 RPB . . . R 2 -31.727 21.125 -26.952 1 35.16 ? C8 RPB 1202 B 1 HETATM 5 C C9 RPB . . . R 2 -33.215 21.204 -27.243 1 34.59 ? C9 RPB 1202 B 1 HETATM 6 C C10 RPB . . . R 2 -34.053 21.261 -25.997 1 35.61 ? C10 RPB 1202 B 1 HETATM 7 C C5 RPB . . . R 2 -33.705 20.457 -24.84 1 35.16 ? C5 RPB 1202 B 1 HETATM 8 C C4 RPB . . . R 2 -32.67 19.543 -24.548 1 34.77 ? C4 RPB 1202 B 1 HETATM 9 C C3 RPB . . . R 2 -32.606 18.959 -23.277 1 34.77 ? C3 RPB 1202 B 1 HETATM 10 C C2 RPB . . . R 2 -33.581 19.264 -22.357 1 35.58 ? C2 RPB 1202 B 1 HETATM 11 F F1 RPB . . . R 2 -33.502 18.692 -21.128 1 37.56 ? F1 RPB 1202 B 1 HETATM 12 C C1 RPB . . . R 2 -34.624 20.12 -22.605 1 35.24 ? C1 RPB 1202 B 1 HETATM 13 C C6 RPB . . . R 2 -34.675 20.731 -23.854 1 36.21 ? C6 RPB 1202 B 1 HETATM 14 N N2 RPB . . . R 2 -35.568 21.649 -24.376 1 36.58 ? N2 RPB 1202 B 1 HETATM 15 C C11 RPB . . . R 2 -35.192 21.966 -25.666 1 37.92 ? C11 RPB 1202 B 1 HETATM 16 C C12 RPB . . . R 2 -35.986 22.941 -26.437 1 40.82 ? C12 RPB 1202 B 1 HETATM 17 C C14 RPB . . . R 2 -36.389 24.145 -25.865 1 41.54 ? C14 RPB 1202 B 1 HETATM 18 C C15 RPB . . . R 2 -36.959 25.137 -26.643 1 43.28 ? C15 RPB 1202 B 1 HETATM 19 C C13 RPB . . . R 2 -36.232 22.737 -27.79 1 42.72 ? C13 RPB 1202 B 1 HETATM 20 C C17 RPB . . . R 2 -36.802 23.734 -28.56 1 42.56 ? C17 RPB 1202 B 1 HETATM 21 C C16 RPB . . . R 2 -37.136 24.96 -28.008 1 45.55 ? C16 RPB 1202 B 1 HETATM 22 C C18 RPB . . . R 2 -37.501 26.124 -28.896 1 48.77 ? C18 RPB 1202 B 1 HETATM 23 N N3 RPB . . . R 2 -38.897 26.17 -29.332 1 50.77 ? N3 RPB 1202 B 1 HETATM 24 C C19 RPB . . . R 2 -39.131 27.304 -30.232 1 52.19 ? C19 RPB 1202 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #