data_6VKO # _model_server_result.job_id R-25mb210O6bT3bKTRJMKg _model_server_result.datetime_utc '2024-11-04 22:06:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6vko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 6VKO # _exptl.entry_id 6VKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.36 _cell.angle_gamma 90 _cell.entry_id 6VKO _cell.length_a 139.701 _cell.length_b 129.751 _cell.length_c 102.72 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,U 1 1 B,I,J,K,L,V 2 1 C,M,N,O,P,W 3 1 D,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 845 1_555 A SG CYS 206 A CYS 845 2_657 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? disulf ? disulf2 B SG CYS 206 B CYS 845 1_555 D SG CYS 206 D CYS 845 2_658 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? disulf ? disulf3 C SG CYS 206 C CYS 845 1_555 C SG CYS 206 C CYS 845 2_658 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 353 n n S O2 SO4 doub 354 n n S O3 SO4 sing 355 n n S O4 SO4 sing 356 n n # _atom_sites.entry_id 6VKO _atom_sites.fract_transf_matrix[1][1] 0.007158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 L1S A 1 1101 1101 L1S XXX . F 3 SO4 A 1 1102 4 SO4 SO4 . G 3 SO4 A 1 1103 5 SO4 SO4 . H 3 SO4 A 1 1104 9 SO4 SO4 . I 2 L1S B 1 1101 1101 L1S XXX . J 3 SO4 B 1 1102 3 SO4 SO4 . K 3 SO4 B 1 1103 8 SO4 SO4 . L 3 SO4 B 1 1104 12 SO4 SO4 . M 2 L1S C 1 1101 1101 L1S XXX . N 3 SO4 C 1 1102 1 SO4 SO4 . O 3 SO4 C 1 1103 6 SO4 SO4 . P 3 SO4 C 1 1104 10 SO4 SO4 . Q 2 L1S D 1 1101 1101 L1S XXX . R 3 SO4 D 1 1102 2 SO4 SO4 . S 3 SO4 D 1 1103 7 SO4 SO4 . T 3 SO4 D 1 1104 11 SO4 SO4 . U 4 HOH A 1 1201 31 HOH HOH . U 4 HOH A 2 1202 26 HOH HOH . U 4 HOH A 3 1203 30 HOH HOH . U 4 HOH A 4 1204 22 HOH HOH . U 4 HOH A 5 1205 27 HOH HOH . U 4 HOH A 6 1206 4 HOH HOH . V 4 HOH B 1 1201 6 HOH HOH . V 4 HOH B 2 1202 9 HOH HOH . V 4 HOH B 3 1203 5 HOH HOH . V 4 HOH B 4 1204 10 HOH HOH . V 4 HOH B 5 1205 25 HOH HOH . V 4 HOH B 6 1206 8 HOH HOH . V 4 HOH B 7 1207 7 HOH HOH . V 4 HOH B 8 1208 21 HOH HOH . W 4 HOH C 1 1201 11 HOH HOH . W 4 HOH C 2 1202 12 HOH HOH . W 4 HOH C 3 1203 29 HOH HOH . W 4 HOH C 4 1204 24 HOH HOH . W 4 HOH C 5 1205 13 HOH HOH . W 4 HOH C 6 1206 15 HOH HOH . W 4 HOH C 7 1207 14 HOH HOH . X 4 HOH D 1 1201 16 HOH HOH . X 4 HOH D 2 1202 18 HOH HOH . X 4 HOH D 3 1203 1 HOH HOH . X 4 HOH D 4 1204 19 HOH HOH . X 4 HOH D 5 1205 23 HOH HOH . X 4 HOH D 6 1206 28 HOH HOH . X 4 HOH D 7 1207 2 HOH HOH . X 4 HOH D 8 1208 20 HOH HOH . X 4 HOH D 9 1209 3 HOH HOH . X 4 HOH D 10 1210 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 3 29.841 -18.937 62.16 1 94.36 ? S SO4 1102 A 1 HETATM 2 O O1 SO4 . . . F 3 30.948 -18.923 61.238 1 99.24 ? O1 SO4 1102 A 1 HETATM 3 O O2 SO4 . . . F 3 28.604 -18.986 61.43 1 101.62 ? O2 SO4 1102 A 1 HETATM 4 O O3 SO4 . . . F 3 29.937 -20.098 63.003 1 97.05 ? O3 SO4 1102 A 1 HETATM 5 O O4 SO4 . . . F 3 29.876 -17.744 62.961 1 90.12 ? O4 SO4 1102 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #